Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35375 * 116.99720 * 2 1 4 4 C 1.36090 * 125.57621 * 179.71667 * 3 2 1 5 5 C 1.39912 * 107.17771 * 179.85137 * 4 3 2 6 6 C 1.37827 * 106.67144 * 0.40614 * 5 4 3 7 7 C 1.46134 * 126.02670 * 179.72469 * 6 5 4 8 8 O 1.21766 * 120.00158 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99607 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.06066 * 359.62856 * 9 7 6 11 11 C 1.53760 * 87.88669 * 152.96442 * 10 9 7 12 12 N 1.46500 * 114.26312 * 139.79415 * 11 10 9 13 13 C 1.34770 * 120.00056 * 111.47497 * 12 11 10 14 14 O 1.21285 * 120.00255 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00036 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47138 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00189 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99687 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00358 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00197 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99819 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47186 * 90.00021 * 21 19 17 23 23 H 1.48496 * 109.47322 * 209.99915 * 21 19 17 24 24 H 1.48497 * 109.47165 * 329.99857 * 21 19 17 25 25 C 1.47070 * 136.05400 * 180.02562 * 9 7 6 26 26 O 1.34001 * 125.57901 * 0.03002 * 3 2 1 27 27 H 1.08996 * 109.47352 * 299.99631 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99655 * 1 2 3 29 29 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08009 * 126.41208 * 0.02562 * 4 3 2 31 31 H 1.07993 * 126.66120 * 180.19144 * 5 4 3 32 32 H 1.08995 * 113.46792 * 267.69789 * 10 9 7 33 33 H 1.09002 * 113.46363 * 38.13518 * 10 9 7 34 34 H 1.09001 * 114.39303 * 272.67746 * 11 10 9 35 35 H 0.97002 * 119.99626 * 291.47170 * 12 11 10 36 36 H 1.08996 * 109.47078 * 300.00242 * 15 13 12 37 37 H 1.09000 * 109.47270 * 60.00170 * 15 13 12 38 38 H 0.97004 * 119.99896 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.46731 * 321.86547 * 25 9 7 40 40 H 1.09000 * 113.46931 * 92.30411 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0055 5 6 3.5984 2.7926 -0.0002 6 6 2.3520 3.3810 0.0004 7 6 2.0793 4.8167 0.0013 8 8 3.0017 5.6116 0.0011 9 7 0.8068 5.2608 0.0023 10 6 -0.5293 4.6463 -0.0039 11 6 -1.0507 5.9088 0.7022 12 7 -2.3576 6.3687 0.2258 13 6 -3.4356 6.2852 1.0303 14 8 -3.3238 5.8298 2.1488 15 6 -4.7798 6.7587 0.5404 16 16 -6.0152 6.5174 1.8411 17 6 -7.4471 7.1360 1.0217 18 1 -7.3717 7.5105 0.0115 19 6 -8.6721 7.1420 1.6743 20 7 -9.7419 7.6037 1.0619 21 14 -8.8027 6.4936 3.4213 22 1 -8.5669 7.6028 4.3799 23 1 -10.1591 5.9303 3.6401 24 1 -7.7859 5.4321 3.6326 25 6 0.1434 6.5734 0.0029 26 8 1.4264 2.3957 0.0006 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.1528 0.6454 0.0102 31 1 4.5514 3.3006 -0.0009 32 1 -0.9389 4.5081 -1.0044 33 1 -0.5959 3.7464 0.6075 34 1 -0.9737 5.8811 1.7891 35 1 -2.4469 6.7332 -0.6686 36 1 -4.7218 7.8172 0.2868 37 1 -5.0660 6.1885 -0.3433 38 1 -10.5979 7.6083 1.5182 39 1 0.6500 7.3155 0.6200 40 1 -0.0890 6.9428 -0.9959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284884005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -43.662380 kcal Electronic energy + Delta-G solvation = -25904.426164 eV Core-core repulsion = 21814.824149 eV Total energy + Delta-G solvation = -4089.602014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.18136 -40.93030 -39.32262 -38.92373 -37.96915 -34.01661 -33.62613 -32.49375 -30.88518 -29.80687 -28.57876 -27.34414 -26.45826 -25.67457 -23.48173 -22.42501 -21.73962 -20.79593 -19.99977 -19.03836 -17.99764 -17.85602 -17.55891 -17.01000 -16.62549 -16.43906 -15.82424 -15.54621 -15.19045 -15.06359 -14.75844 -14.27816 -14.15509 -13.72566 -13.62921 -13.44981 -13.40558 -13.23082 -13.11616 -12.84848 -12.65350 -12.57592 -12.23308 -12.05062 -11.45518 -11.32703 -11.05938 -10.77238 -10.64189 -10.47809 -9.92102 -9.70458 -9.32493 -9.20133 -9.05360 -8.57970 -8.52106 -6.99190 -6.34285 -4.06991 0.61435 1.71987 1.91344 2.18152 2.65290 2.71762 2.73020 2.81683 3.24876 3.29548 3.45224 3.57075 3.86954 4.12926 4.27643 4.34623 4.42751 4.55160 4.61713 4.62310 4.72164 4.85282 4.91524 5.04769 5.05648 5.08189 5.12931 5.15052 5.20349 5.29358 5.41276 5.65389 5.68108 5.83726 5.91519 6.08501 6.28443 6.63733 7.11547 7.38500 7.61118 7.88567 8.28395 8.36100 9.11636 10.74817 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002146 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.877091 B =13044.800309 C =14179.477873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.261 6.261 3 C 0.219 3.781 4 C -0.243 4.243 5 C -0.077 4.077 6 C -0.100 4.100 7 C 0.641 3.359 8 O -0.520 6.520 9 N -0.639 5.639 10 C 0.085 3.915 11 C 0.118 3.882 12 N -0.724 5.724 13 C 0.535 3.465 14 O -0.514 6.514 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.523 4.523 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.099 3.901 26 O -0.185 6.185 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.404 0.596 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.271 0.729 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.095 -11.611 -5.916 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.175 6.175 3 C 0.122 3.878 4 C -0.263 4.263 5 C -0.098 4.098 6 C -0.150 4.150 7 C 0.432 3.568 8 O -0.398 6.398 9 N -0.374 5.374 10 C -0.039 4.039 11 C 0.011 3.989 12 N -0.378 5.378 13 C 0.322 3.678 14 O -0.387 6.387 15 C -0.276 4.276 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.515 5.515 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.024 4.024 26 O -0.085 6.085 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.239 0.761 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.535 -12.109 -4.032 27.656 hybrid contribution -0.776 0.366 -1.215 1.487 sum 23.759 -11.743 -5.246 27.017 Atomic orbital electron populations 1.23234 0.76101 1.05341 1.02976 1.86423 1.23525 1.18645 1.88925 1.20878 0.89624 0.78319 0.99028 1.20795 0.92136 0.96876 1.16454 1.21992 0.97665 0.92573 0.97559 1.21677 0.86986 0.86883 1.19477 1.15656 0.80674 0.84058 0.76380 1.90928 1.42844 1.54009 1.51989 1.49036 1.04184 1.11274 1.72904 1.23742 0.79372 0.99095 1.01733 1.22699 0.81848 0.93412 1.00982 1.45778 1.07067 1.66306 1.18627 1.20380 0.85227 0.77256 0.84983 1.90718 1.85138 1.43476 1.19370 1.23288 0.94560 1.04911 1.04804 1.84817 1.02340 1.83774 1.20527 1.22297 0.92672 1.47942 1.04092 0.89327 1.24719 0.94510 0.93747 0.98358 1.69937 0.99686 1.44139 1.37782 0.86734 0.79286 0.81373 0.84442 1.19182 1.19926 1.15945 1.23402 0.90142 0.87299 1.01570 1.84013 1.37550 1.14195 1.72789 0.91468 0.91633 0.86883 0.81748 0.81385 0.88963 0.89548 0.84789 0.76069 0.88224 0.88247 0.91889 0.88999 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.10 10.55 -41.05 -0.43 -2.53 16 3 C 0.22 2.00 7.86 29.96 0.24 2.23 16 4 C -0.24 -2.01 10.89 -39.73 -0.43 -2.44 16 5 C -0.08 -0.71 10.66 -39.11 -0.42 -1.12 16 6 C -0.10 -1.07 7.12 -36.57 -0.26 -1.33 16 7 C 0.64 7.68 8.02 -13.09 -0.10 7.57 16 8 O -0.52 -7.56 17.64 5.13 0.09 -7.47 16 9 N -0.64 -6.39 3.69 -186.81 -0.69 -7.08 16 10 C 0.09 0.73 7.64 -8.37 -0.06 0.66 16 11 C 0.12 1.10 4.62 -67.66 -0.31 0.79 16 12 N -0.72 -7.26 5.39 -53.47 -0.29 -7.55 16 13 C 0.54 8.23 7.85 -10.99 -0.09 8.14 16 14 O -0.51 -9.94 15.45 5.55 0.09 -9.85 16 15 C -0.13 -2.17 6.16 36.01 0.22 -1.95 16 16 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 17 C -0.52 -14.50 10.04 30.94 0.31 -14.18 16 18 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 19 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 20 N -0.88 -25.90 13.97 55.49 0.78 -25.13 16 21 Si 0.86 21.17 27.74 -169.99 -4.71 16.45 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 25 C 0.10 0.80 8.38 -8.49 -0.07 0.73 16 26 O -0.19 -1.84 8.72 -19.24 -0.17 -2.00 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.78 7.49 -51.93 -0.39 0.39 16 34 H 0.13 1.51 7.45 -51.93 -0.39 1.12 16 35 H 0.40 2.81 8.76 -40.82 -0.36 2.45 16 36 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -35.64 369.40 -6.70 -42.34 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.94 Total: -0.26 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.01 Total: 2.90 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.20 Total: -39.76 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.42 Total: -21.86 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.64 -6.70 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284884005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.327 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds