Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46716 * 120.00463 * 10 8 6 13 13 H 1.48500 * 109.46999 * 240.00161 * 10 8 6 14 14 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 15 15 O 1.42102 * 106.39988 * 23.54158 * 14 4 3 16 16 O 1.42093 * 106.40335 * 156.45809 * 14 4 3 17 17 C 1.76205 * 107.21728 * 270.00185 * 14 4 3 18 18 C 1.38170 * 119.54980 * 269.72448 * 17 14 4 19 19 C 1.39833 * 118.99686 * 179.71852 * 18 17 14 20 20 C 1.48046 * 120.93292 * 180.30655 * 19 18 17 21 21 O 1.21428 * 119.99491 * 0.23859 * 20 19 18 22 22 O 1.34674 * 120.00235 * 180.25060 * 20 19 18 23 23 C 1.45194 * 116.99706 * 179.97438 * 22 20 19 24 24 C 1.39890 * 118.14251 * 0.54118 * 19 18 17 25 25 C 1.38127 * 118.99466 * 359.74301 * 24 19 18 26 26 N 1.31794 * 119.55077 * 89.99990 * 17 14 4 27 27 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 29 29 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 31 31 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 32 32 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 33 33 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.50095 * 0.02562 * 18 17 14 36 36 H 1.09000 * 109.46983 * 179.97438 * 23 22 20 37 37 H 1.08998 * 109.47303 * 299.99506 * 23 22 20 38 38 H 1.09001 * 109.47512 * 59.99726 * 23 22 20 39 39 H 1.07995 * 120.50015 * 179.75880 * 24 19 18 40 40 H 1.08003 * 119.54477 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 1 4.9183 2.7080 0.1170 8 6 6.5860 1.3764 0.1650 9 7 7.0140 0.1767 0.4925 10 14 7.7610 2.6107 -0.6001 11 1 7.0376 3.8781 -0.8748 12 1 8.8818 2.8741 0.3377 13 1 8.2977 2.0610 -1.8710 14 16 2.5444 2.0461 2.5562 15 8 1.1237 2.0287 2.5832 16 8 3.3481 1.4590 3.5704 17 6 3.0196 3.7403 2.4631 18 6 4.2710 4.1224 2.9070 19 6 4.6384 5.4689 2.8222 20 6 5.9709 5.9244 3.2791 21 8 6.7640 5.1238 3.7312 22 8 6.3032 7.2267 3.1934 23 6 7.6259 7.6015 3.6605 24 6 3.7097 6.3745 2.2982 25 6 2.4783 5.9060 1.8835 26 7 2.1745 4.6266 1.9759 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.6874 0.4393 1.9880 33 1 4.2584 -0.1564 0.3665 34 1 7.9399 -0.0671 0.3370 35 1 4.9569 3.3913 3.3089 36 1 7.7648 8.6753 3.5351 37 1 7.7259 7.3425 4.7145 38 1 8.3803 7.0680 3.0821 39 1 3.9521 7.4239 2.2189 40 1 1.7548 6.5973 1.4771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309531514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -88.515765 kcal Electronic energy + Delta-G solvation = -28127.366580 eV Core-core repulsion = 24035.819577 eV Total energy + Delta-G solvation = -4091.547003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88075 -39.66507 -36.81331 -36.60030 -36.37278 -35.33211 -33.27386 -33.02663 -31.93258 -31.59893 -28.15292 -27.44626 -25.11214 -24.97898 -23.97042 -22.47852 -21.64465 -19.52095 -19.22430 -17.98582 -17.53796 -17.00630 -16.62061 -16.53132 -16.37165 -16.01731 -15.84936 -15.35478 -14.60236 -14.48158 -14.45349 -14.12381 -13.78121 -13.62284 -13.34455 -13.28806 -12.58757 -12.46638 -12.21238 -12.07522 -11.67697 -11.55080 -11.32853 -11.20289 -11.13116 -11.07244 -10.99609 -10.88079 -10.76047 -10.57034 -10.18935 -10.14596 -9.86888 -9.70594 -9.54640 -9.01370 -8.54634 -8.17213 -6.17274 -4.24282 0.28138 0.70048 0.92473 2.34202 2.39477 2.64269 3.20217 3.28176 3.29283 3.36478 3.66730 4.14648 4.24668 4.31879 4.33790 4.67991 4.80857 4.91833 4.92451 5.01096 5.14858 5.18678 5.31041 5.35561 5.48863 5.50977 5.55041 5.77276 5.79834 6.10109 6.12875 6.28118 6.29575 6.39260 6.99751 7.17662 7.25180 7.33546 7.50791 7.52969 7.55164 7.78763 8.06463 8.79827 9.42767 10.90701 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.005735 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.455877 B = 4880.992582 C = 6778.835428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.155 3.845 4 N -0.970 5.970 5 C 0.239 3.761 6 C -0.546 4.546 7 H 0.059 0.941 8 C 0.071 3.929 9 N -0.884 5.884 10 Si 0.886 3.114 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.281 1.281 14 S 2.694 3.306 15 O -0.947 6.947 16 O -0.946 6.946 17 C -0.439 4.439 18 C -0.002 4.002 19 C -0.098 4.098 20 C 0.508 3.492 21 O -0.479 6.479 22 O -0.355 6.355 23 C 0.036 3.964 24 C -0.072 4.072 25 C 0.067 3.933 26 N -0.370 5.370 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.155 0.845 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 12.820 1.877 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.184 4.184 3 C 0.030 3.970 4 N -0.810 5.810 5 C 0.118 3.882 6 C -0.585 4.585 7 H 0.077 0.923 8 C -0.133 4.133 9 N -0.521 5.521 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.206 1.206 14 S 2.777 3.223 15 O -0.937 6.937 16 O -0.935 6.935 17 C -0.655 4.655 18 C -0.023 4.023 19 C -0.108 4.108 20 C 0.350 3.650 21 O -0.365 6.365 22 O -0.272 6.272 23 C -0.057 4.057 24 C -0.093 4.093 25 C -0.094 4.094 26 N -0.081 5.081 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.190 0.810 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.173 0.827 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.833 11.825 2.467 13.878 hybrid contribution 2.357 1.716 -0.542 2.965 sum -4.476 13.541 1.925 14.391 Atomic orbital electron populations 1.23798 0.95835 1.01620 1.01034 1.23413 0.96026 0.99612 0.99353 1.20268 0.90904 0.94882 0.90980 1.57430 1.25796 1.69041 1.28686 1.19373 0.75170 0.94113 0.99578 1.21526 0.94508 0.99958 1.42515 0.92264 1.24880 0.97979 0.95217 0.95247 1.69920 1.16718 1.18819 1.46679 0.86621 0.81342 0.81470 0.79183 1.19926 1.20645 1.20641 1.02409 0.73420 0.72533 0.73936 1.93542 1.27831 1.85958 1.86378 1.93604 1.70766 1.73714 1.55437 1.34275 0.98742 1.25063 1.07414 1.22204 0.95132 0.95634 0.89334 1.19479 0.92511 0.94748 1.04041 1.20956 0.87148 0.80855 0.75994 1.90917 1.50602 1.54357 1.40613 1.86486 1.36676 1.26753 1.77310 1.23337 0.80680 1.01390 1.00343 1.22715 0.93417 1.01128 0.92015 1.23084 0.95443 0.92708 0.98179 1.67644 1.31858 1.02460 1.06099 0.88368 0.88832 0.87020 0.90449 0.89042 0.92624 0.93436 0.92486 0.81048 0.87776 0.91556 0.91472 0.82718 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 14.32 29.01 0.42 -2.21 16 2 C -0.16 -2.64 9.84 -36.03 -0.35 -3.00 16 3 C 0.16 2.72 5.78 -5.19 -0.03 2.69 16 4 N -0.97 -19.91 2.75 -116.94 -0.32 -20.23 16 5 C 0.24 5.77 5.43 -5.19 -0.03 5.74 16 6 C -0.55 -14.14 9.38 -34.44 -0.32 -14.46 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.88 -24.96 13.29 55.43 0.74 -24.22 16 10 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 S 2.69 54.89 5.71 -107.50 -0.61 54.28 16 15 O -0.95 -19.48 16.82 -57.17 -0.96 -20.45 16 16 O -0.95 -21.45 15.80 -57.17 -0.90 -22.36 16 17 C -0.44 -8.24 6.86 -17.59 -0.12 -8.36 16 18 C 0.00 -0.04 9.13 -39.01 -0.36 -0.40 16 19 C -0.10 -1.57 5.91 -104.66 -0.62 -2.19 16 20 C 0.51 8.17 7.92 34.75 0.28 8.44 16 21 O -0.48 -9.20 16.23 -19.21 -0.31 -9.51 16 22 O -0.36 -4.49 9.92 -40.42 -0.40 -4.89 16 23 C 0.04 0.34 10.56 101.05 1.07 1.41 16 24 C -0.07 -0.89 9.71 -39.00 -0.38 -1.27 16 25 C 0.07 0.85 11.17 -17.60 -0.20 0.65 16 26 N -0.37 -6.17 10.08 -12.51 -0.13 -6.30 16 27 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 28 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.08 1.25 7.26 -51.93 -0.38 0.87 16 31 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 32 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 33 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.17 3.46 7.29 -52.48 -0.38 3.08 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.16 1.33 7.71 -52.49 -0.40 0.92 16 40 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -33.33 370.89 -7.94 -41.27 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.86 Total: 1.94 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.75 Total: -11.13 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.29 Total: -50.75 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -2.58 Total: -57.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.61 Total: 54.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.33 -7.94 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309531514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.248 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds