Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46716 * 120.00463 * 10 8 6 13 13 H 1.48500 * 109.46999 * 240.00161 * 10 8 6 14 14 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 15 15 O 1.42102 * 106.39988 * 23.54158 * 14 4 3 16 16 O 1.42093 * 106.40335 * 156.45809 * 14 4 3 17 17 C 1.76205 * 107.21728 * 270.00185 * 14 4 3 18 18 C 1.38170 * 119.54980 * 269.72448 * 17 14 4 19 19 C 1.39833 * 118.99686 * 179.71852 * 18 17 14 20 20 C 1.48046 * 120.93292 * 180.30655 * 19 18 17 21 21 O 1.21428 * 119.99491 * 0.23859 * 20 19 18 22 22 O 1.34674 * 120.00235 * 180.25060 * 20 19 18 23 23 C 1.45194 * 116.99706 * 179.97438 * 22 20 19 24 24 C 1.39890 * 118.14251 * 0.54118 * 19 18 17 25 25 C 1.38127 * 118.99466 * 359.74301 * 24 19 18 26 26 N 1.31794 * 119.55077 * 89.99990 * 17 14 4 27 27 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 29 29 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 31 31 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 32 32 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 33 33 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.50095 * 0.02562 * 18 17 14 36 36 H 1.09000 * 109.46983 * 179.97438 * 23 22 20 37 37 H 1.08998 * 109.47303 * 299.99506 * 23 22 20 38 38 H 1.09001 * 109.47512 * 59.99726 * 23 22 20 39 39 H 1.07995 * 120.50015 * 179.75880 * 24 19 18 40 40 H 1.08003 * 119.54477 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 1 4.9183 2.7080 0.1170 8 6 6.5860 1.3764 0.1650 9 7 7.0140 0.1767 0.4925 10 14 7.7610 2.6107 -0.6001 11 1 7.0376 3.8781 -0.8748 12 1 8.8818 2.8741 0.3377 13 1 8.2977 2.0610 -1.8710 14 16 2.5444 2.0461 2.5562 15 8 1.1237 2.0287 2.5832 16 8 3.3481 1.4590 3.5704 17 6 3.0196 3.7403 2.4631 18 6 4.2710 4.1224 2.9070 19 6 4.6384 5.4689 2.8222 20 6 5.9709 5.9244 3.2791 21 8 6.7640 5.1238 3.7312 22 8 6.3032 7.2267 3.1934 23 6 7.6259 7.6015 3.6605 24 6 3.7097 6.3745 2.2982 25 6 2.4783 5.9060 1.8835 26 7 2.1745 4.6266 1.9759 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.6874 0.4393 1.9880 33 1 4.2584 -0.1564 0.3665 34 1 7.9399 -0.0671 0.3370 35 1 4.9569 3.3913 3.3089 36 1 7.7648 8.6753 3.5351 37 1 7.7259 7.3425 4.7145 38 1 8.3803 7.0680 3.0821 39 1 3.9521 7.4239 2.2189 40 1 1.7548 6.5973 1.4771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309531514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -112.124126 kcal Electronic energy + Delta-G solvation = -28128.390316 eV Core-core repulsion = 24035.819577 eV Total energy + Delta-G solvation = -4092.570738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07148 -40.84548 -38.44823 -37.96874 -37.76479 -36.99959 -35.06462 -34.24724 -33.57797 -32.81792 -29.30436 -29.04451 -26.59243 -26.23737 -25.21423 -24.33075 -22.82982 -20.82732 -20.54487 -19.44621 -18.80538 -18.67010 -18.43354 -17.70593 -17.63596 -17.43514 -17.03809 -16.97393 -16.33657 -15.80652 -15.58547 -15.39122 -15.32955 -14.83635 -14.77279 -14.44129 -14.23668 -13.83343 -13.73341 -13.32692 -13.24009 -13.18034 -13.14028 -12.93947 -12.75403 -12.47735 -12.41328 -12.27819 -12.13911 -11.98582 -11.96682 -11.71370 -11.39252 -10.97752 -10.78460 -10.64393 -10.24578 -9.87174 -8.24201 -6.36808 -0.94184 -0.70487 -0.47766 1.15055 1.29315 1.30898 1.33359 1.38798 1.42401 1.96081 2.29413 2.35812 2.66221 2.93373 3.08518 3.26971 3.48164 3.60654 3.77235 3.86027 3.99668 4.18151 4.21797 4.25383 4.29979 4.38629 4.40424 4.62512 4.66748 4.80080 4.89030 5.01239 5.13312 5.21233 5.25533 5.40542 5.64110 5.78759 5.81138 5.99684 6.02504 6.33062 6.36645 6.73730 7.32886 8.84170 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.005735 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.455877 B = 4880.992582 C = 6778.835428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.194 4.194 3 C 0.151 3.849 4 N -0.974 5.974 5 C 0.255 3.745 6 C -0.543 4.543 7 H 0.063 0.937 8 C 0.019 3.981 9 N -0.920 5.920 10 Si 0.943 3.057 11 H -0.264 1.264 12 H -0.287 1.287 13 H -0.270 1.270 14 S 2.702 3.298 15 O -0.953 6.953 16 O -0.983 6.983 17 C -0.456 4.456 18 C -0.028 4.028 19 C -0.115 4.115 20 C 0.511 3.489 21 O -0.524 6.524 22 O -0.341 6.341 23 C 0.026 3.974 24 C -0.037 4.037 25 C 0.080 3.920 26 N -0.387 5.387 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.267 0.733 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.207 0.793 40 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 16.874 0.478 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.214 4.214 3 C 0.027 3.973 4 N -0.813 5.813 5 C 0.132 3.868 6 C -0.582 4.582 7 H 0.081 0.919 8 C -0.181 4.181 9 N -0.559 5.559 10 Si 0.768 3.232 11 H -0.188 1.188 12 H -0.213 1.213 13 H -0.195 1.195 14 S 2.789 3.211 15 O -0.943 6.943 16 O -0.973 6.973 17 C -0.673 4.673 18 C -0.050 4.050 19 C -0.125 4.125 20 C 0.355 3.645 21 O -0.413 6.413 22 O -0.256 6.256 23 C -0.066 4.066 24 C -0.057 4.057 25 C -0.082 4.082 26 N -0.098 5.098 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.224 0.776 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.245 15.838 1.056 17.886 hybrid contribution 2.694 0.678 -0.078 2.779 sum -5.551 16.516 0.978 17.451 Atomic orbital electron populations 1.24075 0.95065 1.03210 0.97583 1.23329 0.96848 0.98713 1.02497 1.20468 0.90689 0.96386 0.89780 1.57306 1.24808 1.69571 1.29648 1.18903 0.76829 0.93734 0.97352 1.21765 0.94829 1.00142 1.41513 0.91924 1.25654 0.99694 0.96793 0.95971 1.70030 1.17133 1.20554 1.48193 0.85728 0.79151 0.79820 0.78486 1.18768 1.21309 1.19479 1.01781 0.72922 0.73136 0.73262 1.93513 1.27828 1.86585 1.86357 1.93551 1.71474 1.75359 1.56949 1.33449 0.99350 1.24300 1.10188 1.21991 0.95039 0.96888 0.91053 1.19628 0.93592 0.94234 1.05013 1.21066 0.86775 0.81633 0.74988 1.90902 1.51906 1.55752 1.42784 1.86474 1.38195 1.24268 1.76708 1.23731 0.78875 1.03827 1.00190 1.23317 0.91758 1.02665 0.87970 1.24087 0.96461 0.91732 0.95959 1.67653 1.31494 1.04065 1.06583 0.87401 0.86510 0.87699 0.88862 0.89231 0.95716 0.94584 0.92416 0.84340 0.83313 0.91487 0.92452 0.77637 0.75361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 14.32 67.78 0.97 -3.35 16 2 C -0.19 -6.26 9.84 25.64 0.25 -6.00 16 3 C 0.15 5.35 5.78 85.63 0.50 5.84 16 4 N -0.97 -41.63 2.75 -523.88 -1.44 -43.07 16 5 C 0.26 13.03 5.43 85.63 0.47 13.50 16 6 C -0.54 -29.08 9.38 25.60 0.24 -28.84 16 7 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 8 C 0.02 1.07 5.46 84.65 0.46 1.53 16 9 N -0.92 -53.95 13.29 21.45 0.28 -53.66 16 10 Si 0.94 43.60 29.54 68.60 2.03 45.63 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 S 2.70 114.60 5.71 -56.49 -0.32 114.28 16 15 O -0.95 -39.56 16.82 -128.00 -2.15 -41.71 16 16 O -0.98 -48.10 15.80 -128.00 -2.02 -50.12 16 17 C -0.46 -17.22 6.86 84.68 0.58 -16.63 16 18 C -0.03 -1.09 9.13 22.64 0.21 -0.88 16 19 C -0.11 -3.53 5.91 -19.89 -0.12 -3.65 16 20 C 0.51 15.97 7.92 70.42 0.56 16.52 16 21 O -0.52 -20.72 16.23 20.07 0.33 -20.40 16 22 O -0.34 -7.59 9.92 -55.83 -0.55 -8.14 16 23 C 0.03 0.43 10.56 113.37 1.20 1.63 16 24 C -0.04 -0.74 9.71 22.64 0.22 -0.52 16 25 C 0.08 1.64 11.17 84.67 0.95 2.58 16 26 N -0.39 -12.03 10.08 -193.48 -1.95 -13.98 16 27 H 0.11 2.68 7.84 -2.91 -0.02 2.66 16 28 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.10 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.09 2.95 7.26 -2.39 -0.02 2.93 16 31 H 0.09 3.13 8.11 -2.39 -0.02 3.11 16 32 H 0.02 1.41 6.91 -2.39 -0.02 1.39 16 33 H 0.04 1.89 8.11 -2.38 -0.02 1.87 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.14 6.17 7.29 -2.91 -0.02 6.14 16 36 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.21 2.03 7.71 -2.91 -0.02 2.01 16 40 H 0.23 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.34 370.89 1.73 -75.61 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.06 Total: 13.81 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 6.48 Total: -18.26 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -3.11 Total: -110.71 kcal Atomic # 8 Polarization: -115.96 SS G_CDS: -4.40 Total: -120.37 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 114.60 SS G_CDS: -0.32 Total: 114.28 kcal Total: -77.34 1.73 -75.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309531514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds