Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34971 * 117.00115 * 2 1 4 4 O 1.21710 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.41599 * 120.00522 * 179.97438 * 3 2 1 6 6 C 1.36932 * 125.32573 * 179.71680 * 5 3 2 7 7 C 1.37028 * 113.47975 * 179.83735 * 6 5 3 8 8 C 1.35887 * 114.74846 * 0.45856 * 7 6 5 9 9 N 1.38898 * 124.62464 * 179.72420 * 8 7 6 10 10 C 1.34776 * 120.00184 * 180.02562 * 9 8 7 11 11 O 1.21579 * 120.00150 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99523 * 180.02562 * 10 9 8 13 13 C 1.47424 * 125.65417 * 359.69063 * 12 10 9 14 14 C 1.55129 * 104.72654 * 155.81793 * 13 12 10 15 15 C 1.55164 * 101.48468 * 37.29391 * 14 13 12 16 16 O 1.42902 * 110.71783 * 82.69600 * 15 14 13 17 17 C 1.50699 * 110.87006 * 205.89945 * 15 14 13 18 18 H 1.07994 * 120.00008 * 355.06584 * 17 15 14 19 19 C 1.37882 * 119.99800 * 175.06314 * 17 15 14 20 20 N 1.31514 * 119.99665 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00093 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46762 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47005 * 119.99974 * 21 19 17 24 24 H 1.48502 * 109.47072 * 240.00504 * 21 19 17 25 25 C 1.47023 * 125.64356 * 179.97438 * 12 10 9 26 26 S 1.70615 * 110.75781 * 359.74662 * 8 7 6 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00009 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00057 * 1 2 3 30 30 H 1.08002 * 123.26312 * 359.97438 * 6 5 3 31 31 H 1.07994 * 122.62739 * 180.22598 * 7 6 5 32 32 H 0.97002 * 119.99372 * 359.97438 * 9 8 7 33 33 H 1.09003 * 110.36310 * 274.75054 * 13 12 10 34 34 H 1.08998 * 110.36530 * 37.06968 * 13 12 10 35 35 H 1.09000 * 111.19177 * 279.19111 * 14 13 12 36 36 H 1.09000 * 110.90744 * 155.27334 * 14 13 12 37 37 H 0.96694 * 113.99443 * 185.02490 * 16 15 14 38 38 H 0.97001 * 119.99705 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.88402 * 300.43596 * 25 12 10 40 40 H 1.08995 * 109.88642 * 61.44965 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2026 0.0000 4 8 1.3790 2.2233 0.0005 5 6 3.4559 1.2768 0.0005 6 6 4.1880 2.4339 -0.0049 7 6 5.5420 2.2233 0.0006 8 6 5.9145 0.9165 0.0006 9 7 7.2300 0.4708 0.0002 10 6 7.4937 -0.8509 -0.0004 11 8 6.5801 -1.6531 0.0000 12 7 8.7702 -1.2832 -0.0002 13 6 9.9684 -0.4243 -0.0060 14 6 11.0873 -1.3041 0.6110 15 6 10.7415 -2.6989 0.0259 16 8 11.2691 -2.8381 -1.2948 17 6 11.2528 -3.7983 0.9209 18 1 11.8484 -3.5553 1.7883 19 6 10.9601 -5.1144 0.6322 20 7 10.2352 -5.4103 -0.4244 21 14 11.5945 -6.4772 1.7411 22 1 12.3798 -5.8848 2.8536 23 1 10.4465 -7.2381 2.2965 24 1 12.4610 -7.3919 0.9552 25 6 9.1985 -2.6897 -0.0002 26 16 4.5459 -0.1023 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 3.7416 3.4174 -0.0107 31 1 6.2571 3.0326 0.0010 32 1 7.9588 1.1109 -0.0005 33 1 10.2259 -0.1393 -1.0262 34 1 9.8026 0.4622 0.6060 35 1 11.0277 -1.3112 1.6993 36 1 12.0708 -0.9733 0.2772 37 1 11.0161 -3.6612 -1.7346 38 1 10.0289 -6.3361 -0.6273 39 1 8.8096 -3.1957 0.8835 40 1 8.8379 -3.1871 -0.9006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365067430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -119.043654 kcal Electronic energy + Delta-G solvation = -26745.248463 eV Core-core repulsion = 22652.377672 eV Total energy + Delta-G solvation = -4092.870791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52986 -40.47467 -38.30109 -37.52374 -36.40666 -34.70201 -34.40277 -32.35045 -30.59287 -29.63781 -28.09077 -27.41912 -25.59806 -24.46536 -23.01628 -22.27654 -20.57021 -20.02623 -19.62199 -18.58864 -17.75219 -17.30050 -17.23182 -16.52343 -16.09372 -15.91802 -15.56023 -15.24893 -14.77755 -14.55126 -14.06363 -14.04135 -13.57120 -13.23135 -13.17953 -13.05401 -12.87303 -12.54656 -12.40411 -12.11504 -11.84056 -11.66702 -11.23559 -11.07673 -10.94058 -10.88277 -10.84349 -10.80001 -10.69776 -10.55143 -10.32654 -9.81481 -9.49058 -8.80221 -8.61048 -8.48725 -8.39561 -7.90014 -6.40101 -4.49039 0.35970 1.29737 1.97371 2.08631 2.55789 2.82587 2.97993 3.13985 3.23153 3.23933 3.26182 3.93915 4.18865 4.87140 4.95474 4.99517 5.04749 5.06281 5.09237 5.25132 5.40554 5.41917 5.52386 5.61491 5.76195 5.82121 5.88257 6.07341 6.27433 6.29479 6.36613 6.45778 6.63840 6.66213 6.84881 7.09791 7.23898 7.61646 7.72720 7.86814 7.93595 8.42034 8.55396 9.15448 9.25784 10.67808 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002575 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.107267 B =10872.420574 C =11910.542151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.550 3.450 4 O -0.519 6.519 5 C -0.369 4.369 6 C 0.002 3.998 7 C -0.236 4.236 8 C 0.067 3.933 9 N -0.645 5.645 10 C 0.703 3.297 11 O -0.560 6.560 12 N -0.614 5.614 13 C 0.095 3.905 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.584 6.584 17 C -0.539 4.539 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.118 3.882 26 S 0.384 5.616 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.384 0.616 38 H 0.271 0.729 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 12.289 0.364 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.398 3.602 4 O -0.411 6.411 5 C -0.487 4.487 6 C -0.032 4.032 7 C -0.269 4.269 8 C -0.155 4.155 9 N -0.292 5.292 10 C 0.404 3.596 11 O -0.439 6.439 12 N -0.349 5.349 13 C -0.027 4.027 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.003 4.003 26 S 0.647 5.353 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.163 10.768 0.402 14.812 hybrid contribution 0.559 0.771 0.385 1.027 sum -9.604 11.539 0.787 15.034 Atomic orbital electron populations 1.22863 0.76912 1.03607 1.02272 1.86223 1.23289 1.32849 1.84850 1.18353 0.87495 0.81495 0.72904 1.90863 1.66620 1.35667 1.47934 1.22998 0.95682 1.02046 1.28012 1.20238 0.91598 0.98152 0.93212 1.19802 0.96399 0.94143 1.16510 1.22415 0.91179 0.98896 1.03025 1.42164 1.04862 1.07515 1.74648 1.15613 0.83704 0.81038 0.79234 1.90825 1.42836 1.52137 1.58097 1.48015 1.02096 1.11027 1.73715 1.22473 0.86025 0.93468 1.00775 1.22777 0.96949 0.95563 1.00001 1.19514 0.86258 0.91311 0.82090 1.86113 1.77156 1.45727 1.30323 1.21496 1.34299 0.90621 1.11273 0.91347 1.25083 0.93768 0.99165 0.95258 1.69686 1.37224 1.20032 1.26192 0.86325 0.78759 0.81286 0.80434 1.19573 1.20688 1.20678 1.23133 0.98523 0.76106 1.02581 1.84765 0.87044 0.99579 1.63915 0.88067 0.92230 0.92236 0.83299 0.83663 0.74751 0.91158 0.92202 0.90174 0.90173 0.76577 0.91891 0.91027 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.45 101.05 1.06 1.41 16 2 O -0.36 -4.63 10.22 -41.24 -0.42 -5.05 16 3 C 0.55 7.90 7.72 32.01 0.25 8.15 16 4 O -0.52 -8.25 16.49 -19.43 -0.32 -8.57 16 5 C -0.37 -5.05 6.26 -38.77 -0.24 -5.29 16 6 C 0.00 0.02 9.91 -40.49 -0.40 -0.38 16 7 C -0.24 -2.62 10.21 -40.86 -0.42 -3.04 16 8 C 0.07 0.89 7.00 -15.19 -0.11 0.78 16 9 N -0.65 -8.68 5.36 -16.20 -0.09 -8.77 16 10 C 0.70 12.40 8.45 -86.92 -0.73 11.67 16 11 O -0.56 -11.50 14.09 5.30 0.07 -11.42 16 12 N -0.61 -11.13 3.32 -176.10 -0.59 -11.71 16 13 C 0.10 1.42 6.58 -2.41 -0.02 1.40 16 14 C -0.11 -2.02 6.24 -24.46 -0.15 -2.17 16 15 C 0.25 5.50 0.85 -89.93 -0.08 5.42 16 16 O -0.58 -13.55 13.07 -35.23 -0.46 -14.01 16 17 C -0.54 -13.16 8.13 -34.44 -0.28 -13.44 16 18 H 0.07 1.65 7.78 -52.49 -0.41 1.25 16 19 C 0.07 1.75 5.28 -17.82 -0.09 1.66 16 20 N -0.89 -22.50 10.96 55.43 0.61 -21.89 16 21 Si 0.90 19.56 29.54 -169.99 -5.02 14.53 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.12 2.59 5.23 -3.06 -0.02 2.58 16 26 S 0.38 5.58 19.75 -107.50 -2.12 3.45 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.15 1.55 8.01 -52.49 -0.42 1.13 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.41 4.25 7.27 -40.82 -0.30 3.95 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 35 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.38 9.19 7.45 45.56 0.34 9.53 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.07 1.73 7.82 -51.93 -0.41 1.33 16 40 H 0.07 1.70 7.92 -51.93 -0.41 1.29 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -29.19 355.08 -8.29 -37.48 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.07 Total: 11.87 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.23 Total: 8.74 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.06 Total: -42.37 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.13 Total: -39.05 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -2.12 Total: 3.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.19 -8.29 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365067430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.563 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds