Wall clock time and date at job start Sat Apr 11 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46617 * 2 1 4 4 S 1.65601 * 119.99688 * 165.00053 * 3 2 1 5 5 O 1.42108 * 104.27577 * 308.92374 * 4 3 2 6 6 O 1.42104 * 104.27720 * 181.07006 * 4 3 2 7 7 C 1.81400 * 104.45199 * 64.99671 * 4 3 2 8 8 C 1.52993 * 109.47222 * 179.97438 * 7 4 3 9 9 N 1.46498 * 109.47472 * 180.02562 * 8 7 4 10 10 S 1.65601 * 120.00315 * 165.27589 * 9 8 7 11 11 O 1.42102 * 104.27710 * 180.79984 * 10 9 8 12 12 O 1.42101 * 104.27317 * 308.65327 * 10 9 8 13 13 C 1.81389 * 104.44936 * 64.72563 * 10 9 8 14 14 C 1.53007 * 109.47309 * 173.81201 * 13 10 9 15 15 C 1.50700 * 115.54854 * 65.19124 * 14 13 10 16 16 H 1.07999 * 120.00034 * 264.78379 * 15 14 13 17 17 C 1.37876 * 119.99863 * 84.78912 * 15 14 13 18 18 N 1.31516 * 120.00071 * 352.22587 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 172.22501 * 17 15 14 20 20 H 1.48495 * 109.47397 * 60.00211 * 19 17 15 21 21 H 1.48501 * 109.46768 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 299.99664 * 19 17 15 23 23 C 1.53002 * 117.49610 * 279.52810 * 14 13 10 24 24 C 1.52995 * 117.49864 * 210.86683 * 14 13 10 25 25 H 1.09008 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47627 * 300.00054 * 1 2 3 27 27 H 1.08998 * 109.47154 * 60.00913 * 1 2 3 28 28 H 1.08995 * 109.47627 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.47095 * 119.99444 * 2 1 3 30 30 H 0.97001 * 120.00203 * 344.99610 * 3 2 1 31 31 H 1.09004 * 109.46778 * 59.99738 * 7 4 3 32 32 H 1.08999 * 109.46872 * 300.00247 * 7 4 3 33 33 H 1.08997 * 109.47469 * 59.99829 * 8 7 4 34 34 H 1.08999 * 109.47488 * 299.99979 * 8 7 4 35 35 H 0.97001 * 119.99696 * 345.00454 * 9 8 7 36 36 H 1.09006 * 109.47337 * 293.80721 * 13 10 9 37 37 H 1.09002 * 109.47632 * 53.81361 * 13 10 9 38 38 H 0.97003 * 120.00122 * 185.02862 * 18 17 15 39 39 H 1.08996 * 117.49740 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.49983 * 145.01990 * 23 14 13 41 41 H 1.09000 * 117.49768 * 214.97541 * 24 14 13 42 42 H 1.09001 * 117.49907 * 359.97251 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 16 3.6003 1.7002 0.3712 5 8 3.8178 1.0144 1.5966 6 8 3.6992 3.1159 0.2964 7 6 4.5450 0.9244 -0.9690 8 6 6.0400 1.1527 -0.7376 9 7 6.8030 0.5266 -1.8203 10 16 8.3988 0.9116 -2.0387 11 8 8.7933 0.1430 -3.1670 12 8 8.4143 2.3319 -2.0782 13 6 9.2196 0.3074 -0.5383 14 6 10.7341 0.4672 -0.6859 15 6 11.2322 1.8867 -0.7751 16 1 11.4032 2.3393 -1.7406 17 6 11.4698 2.6075 0.3760 18 7 11.1193 2.1154 1.5442 19 14 12.2896 4.2830 0.2763 20 1 11.4575 5.1928 -0.5513 21 1 12.4313 4.8469 1.6428 22 1 13.6325 4.1411 -0.3417 23 6 11.4812 -0.5957 -1.4940 24 6 11.6249 -0.5505 0.0294 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4148 2.1090 -0.2175 31 1 4.2535 1.3661 -1.9219 32 1 4.3389 -0.1458 -0.9865 33 1 6.3318 0.7113 0.2153 34 1 6.2458 2.2229 -0.7204 35 1 6.3745 -0.1163 -2.4067 36 1 8.8756 0.8831 0.3210 37 1 8.9781 -0.7453 -0.3907 38 1 11.2193 2.6518 2.3462 39 1 10.8938 -1.4090 -1.9200 40 1 12.3333 -0.2684 -2.0897 41 1 12.5715 -0.1934 0.4351 42 1 11.1320 -1.3337 0.6055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365645310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:58 Heat of formation + Delta-G solvation = -156.662898 kcal Electronic energy + Delta-G solvation = -26128.810127 eV Core-core repulsion = 22169.751994 eV Total energy + Delta-G solvation = -3959.058133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.56430 -38.26143 -38.02407 -37.18812 -37.05591 -36.76679 -36.71100 -34.08544 -31.29205 -30.55686 -29.86159 -27.48898 -24.60158 -23.70506 -22.98283 -21.58376 -20.57045 -20.27445 -18.82649 -18.58768 -18.32781 -17.57915 -17.18698 -17.09491 -16.84549 -16.68200 -16.22110 -15.95385 -15.58439 -15.43755 -15.38890 -14.90065 -14.10435 -13.85516 -13.76045 -13.67022 -13.31985 -13.21336 -13.16496 -13.07552 -12.99524 -12.92521 -12.89818 -12.84560 -12.68711 -12.51701 -12.44372 -12.39414 -12.21801 -11.91987 -11.82277 -11.56038 -10.88078 -10.65943 -10.54131 -10.37433 -9.88136 -8.19688 -6.34375 -0.89114 -0.51304 1.39087 1.41317 1.48041 1.73676 1.97575 2.39577 2.73401 2.89351 3.07342 3.19561 3.29539 3.37975 3.44969 3.79432 3.94612 4.06289 4.20631 4.27513 4.33707 4.39262 4.44400 4.52919 4.55192 4.60749 4.71856 4.83593 4.87769 4.99091 5.13613 5.19151 5.22560 5.39542 5.47540 5.60189 5.71598 6.11248 6.12918 6.22488 6.71990 7.38143 8.86928 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003207 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.236516 B = 8727.757428 C = 9471.204891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.094 3.906 3 N -1.110 6.110 4 S 2.626 3.374 5 O -0.985 6.985 6 O -0.995 6.995 7 C -0.625 4.625 8 C 0.103 3.897 9 N -1.104 6.104 10 S 2.620 3.380 11 O -0.987 6.987 12 O -0.992 6.992 13 C -0.559 4.559 14 C 0.009 3.991 15 C -0.537 4.537 16 H 0.050 0.950 17 C 0.042 3.958 18 N -0.891 5.891 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.194 4.194 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.425 0.575 31 H 0.168 0.832 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.430 0.570 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.271 -8.917 -3.723 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.032 4.032 3 N -0.873 5.873 4 S 2.719 3.281 5 O -0.975 6.975 6 O -0.985 6.985 7 C -0.756 4.756 8 C -0.025 4.025 9 N -0.867 5.867 10 S 2.717 3.283 11 O -0.977 6.977 12 O -0.982 6.982 13 C -0.691 4.691 14 C 0.007 3.993 15 C -0.574 4.574 16 H 0.068 0.932 17 C -0.161 4.161 18 N -0.527 5.527 19 Si 0.758 3.242 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.231 4.231 24 C -0.178 4.178 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.262 0.738 31 H 0.186 0.814 32 H 0.199 0.801 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.268 0.732 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.392 -7.989 -3.361 23.081 hybrid contribution 0.235 0.599 -0.037 0.644 sum -21.157 -7.390 -3.398 22.667 Atomic orbital electron populations 1.21969 0.93128 1.03902 1.02850 1.21646 0.97602 0.80569 1.03336 1.55363 1.27492 1.15875 1.88600 1.04257 0.74553 0.73401 0.75925 1.93582 1.85490 1.76508 1.41922 1.93588 1.86146 1.30917 1.87838 1.30777 1.05045 1.18086 1.21738 1.21155 0.90051 0.99651 0.91625 1.55342 1.28385 1.59122 1.43823 1.04476 0.73244 0.73938 0.76639 1.93479 1.82214 1.72887 1.49167 1.93499 1.85669 1.31769 1.87275 1.29936 1.07908 1.11716 1.19589 1.18397 0.86799 0.91120 1.03000 1.20702 1.46710 0.97362 0.92642 0.93209 1.25521 0.94880 1.00587 0.95100 1.70005 1.46474 1.37765 0.98491 0.85990 0.79652 0.80882 0.77640 1.20243 1.19982 1.19206 1.23251 1.03731 1.01894 0.94240 1.22518 1.01208 1.01081 0.93003 0.89641 0.92596 0.91079 0.88791 0.90714 0.73832 0.81367 0.80141 0.88874 0.90437 0.73238 0.85792 0.84132 0.92515 0.88001 0.89988 0.91675 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.05 71.98 0.72 -0.08 16 2 C 0.09 0.66 6.85 86.38 0.59 1.25 16 3 N -1.11 -12.11 5.89 -187.48 -1.10 -13.21 16 4 S 2.63 49.25 5.46 -56.49 -0.31 48.94 16 5 O -0.99 -25.39 17.50 -127.65 -2.23 -27.62 16 6 O -0.99 -27.64 18.08 -127.65 -2.31 -29.95 16 7 C -0.63 -8.30 6.21 71.98 0.45 -7.85 16 8 C 0.10 2.44 6.13 86.38 0.53 2.97 16 9 N -1.10 -27.98 5.89 -187.51 -1.10 -29.08 16 10 S 2.62 100.65 5.19 -56.49 -0.29 100.36 16 11 O -0.99 -40.38 18.08 -127.65 -2.31 -42.69 16 12 O -0.99 -47.38 17.18 -127.65 -2.19 -49.58 16 13 C -0.56 -22.33 5.92 71.98 0.43 -21.90 16 14 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 15 C -0.54 -29.77 8.18 25.60 0.21 -29.56 16 16 H 0.05 2.86 7.83 -2.91 -0.02 2.83 16 17 C 0.04 2.34 5.38 84.65 0.46 2.79 16 18 N -0.89 -49.52 12.98 21.45 0.28 -49.24 16 19 Si 0.93 44.55 29.55 68.60 2.03 46.57 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 C -0.19 -8.14 9.96 30.62 0.30 -7.84 16 24 C -0.14 -6.14 9.49 30.62 0.29 -5.85 16 25 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 0.66 7.69 -2.38 -0.02 0.64 16 30 H 0.43 3.61 8.62 -96.74 -0.83 2.77 16 31 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.18 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.15 7.71 -2.39 -0.02 2.13 16 35 H 0.43 7.63 8.62 -96.74 -0.83 6.79 16 36 H 0.12 5.24 8.14 -2.39 -0.02 5.22 16 37 H 0.14 4.36 8.09 -2.39 -0.02 4.34 16 38 H 0.27 14.13 8.32 -92.71 -0.77 13.36 16 39 H 0.10 3.69 8.14 -2.39 -0.02 3.68 16 40 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -84.20 381.18 -6.27 -90.47 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.63 Total: 20.74 kcal Atomic # 6 Polarization: -69.62 SS G_CDS: 3.91 Total: -65.71 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -1.93 Total: -91.54 kcal Atomic # 8 Polarization: -140.79 SS G_CDS: -9.04 Total: -149.83 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 149.90 SS G_CDS: -0.60 Total: 149.30 kcal Total: -84.20 -6.27 -90.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365645310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.194 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds