Wall clock time and date at job start Sat Apr 11 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.50706 * 109.46968 * 240.00013 * 2 1 3 5 5 H 1.08008 * 119.99725 * 241.34868 * 4 2 1 6 6 C 1.37868 * 120.00017 * 61.34973 * 4 2 1 7 7 N 1.31517 * 120.00260 * 193.97657 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 13.97566 * 6 4 2 9 9 H 1.48497 * 109.47084 * 84.54866 * 8 6 4 10 10 H 1.48506 * 109.47196 * 204.55046 * 8 6 4 11 11 H 1.48504 * 109.47035 * 324.54693 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00081 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99867 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21372 * 120.00270 * 359.97438 * 14 13 12 16 16 C 1.49297 * 119.99986 * 180.02562 * 14 13 12 17 17 O 1.21374 * 119.99856 * 0.02562 * 16 14 13 18 18 N 1.34775 * 119.99986 * 180.02562 * 16 14 13 19 19 C 1.38361 * 119.99836 * 180.02562 * 18 16 14 20 20 S 1.70440 * 124.66251 * 359.74501 * 19 18 16 21 21 C 1.75456 * 92.53875 * 179.97438 * 20 19 18 22 22 C 1.32580 * 110.83497 * 359.97438 * 21 20 19 23 23 C 1.37262 * 124.66202 * 179.45096 * 19 18 16 24 24 C 1.46477 * 123.60800 * 359.97438 * 23 19 18 25 25 O 1.21626 * 120.00465 * 0.02562 * 24 23 19 26 26 O 1.34884 * 119.99452 * 180.02562 * 24 23 19 27 27 H 1.08994 * 109.46985 * 309.36558 * 1 2 3 28 28 H 1.08996 * 109.46856 * 69.36746 * 1 2 3 29 29 H 1.08993 * 109.47116 * 189.36548 * 1 2 3 30 30 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46963 * 299.99716 * 3 2 1 32 32 H 1.08997 * 109.46993 * 60.00386 * 3 2 1 33 33 H 0.97001 * 120.00626 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46908 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46723 * 60.00019 * 12 2 1 36 36 H 0.97002 * 120.00057 * 0.02562 * 13 12 2 37 37 H 0.96999 * 120.00078 * 359.72177 * 18 16 14 38 38 H 1.07998 * 124.58384 * 179.97438 * 21 20 19 39 39 H 1.08005 * 123.41500 * 179.97438 * 22 21 20 40 40 H 0.96704 * 116.99232 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6011 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5755 -1.4777 3.7809 16 6 1.3796 0.2126 4.8885 17 8 0.6807 1.1987 4.7771 18 7 1.7060 -0.2473 6.1126 19 6 1.2440 0.4044 7.2423 20 16 0.2630 1.7980 7.2244 21 6 0.2035 1.8737 8.9763 22 6 0.8991 0.8819 9.5150 23 6 1.5078 0.0140 8.5315 24 6 2.3207 -1.1553 8.8743 25 8 2.8040 -1.8397 7.9926 26 8 2.5333 -1.4730 10.1678 27 1 -0.3633 0.6518 0.7945 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3633 -1.0139 0.1672 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6980 -0.6298 -4.4269 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9937 0.7578 2.3564 37 1 2.2613 -1.0376 6.2016 38 1 -0.3279 2.6265 9.5397 39 1 0.9988 0.7355 10.5805 40 1 3.0765 -2.2533 10.3446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590614999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:05 Heat of formation + Delta-G solvation = -108.398130 kcal Electronic energy + Delta-G solvation = -26785.235853 eV Core-core repulsion = 22692.826686 eV Total energy + Delta-G solvation = -4092.409167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34510 -40.42118 -39.01778 -37.67611 -36.96650 -36.36092 -35.15294 -33.48115 -31.58980 -29.69042 -27.29104 -26.46193 -26.02494 -25.09239 -23.74174 -22.28505 -21.46737 -20.35377 -19.48810 -18.89575 -18.24508 -17.92624 -16.93153 -16.47128 -16.28606 -16.10006 -15.87971 -15.51259 -15.15213 -15.04198 -14.70984 -14.57918 -14.00463 -13.54920 -13.46598 -13.13764 -12.98103 -12.72405 -12.62431 -12.34665 -12.16532 -12.09993 -11.88896 -11.47055 -11.38912 -11.21495 -10.82868 -10.56061 -10.39443 -10.24877 -10.14304 -9.77770 -9.20945 -8.92151 -8.88449 -8.76001 -8.62704 -8.52691 -6.20661 -4.19132 0.09968 0.80758 1.28129 1.49311 1.54611 2.06031 2.71785 2.86834 3.04697 3.20814 3.28157 3.35726 3.47252 4.30573 4.36733 4.48661 4.57994 5.07161 5.09727 5.28483 5.49892 5.59376 5.70188 5.84847 5.90041 5.95510 6.10982 6.25121 6.30025 6.34181 6.45483 6.49160 6.54716 6.60824 6.82795 7.08718 7.10735 7.32347 7.48730 7.57957 7.62733 7.97940 8.37052 8.83434 9.42573 10.92104 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002519 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.447791 B =11113.455209 C =12075.047204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.029 3.971 3 C -0.152 4.152 4 C -0.516 4.516 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.248 1.248 12 C 0.137 3.863 13 N -0.680 5.680 14 C 0.505 3.495 15 O -0.513 6.513 16 C 0.499 3.501 17 O -0.482 6.482 18 N -0.600 5.600 19 C 0.084 3.916 20 S 0.318 5.682 21 C -0.294 4.294 22 C -0.063 4.063 23 C -0.228 4.228 24 C 0.554 3.446 25 O -0.527 6.527 26 O -0.509 6.509 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.444 0.556 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 5.948 27.030 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 C -0.208 4.208 4 C -0.554 4.554 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.174 1.174 12 C 0.016 3.984 13 N -0.332 5.332 14 C 0.284 3.716 15 O -0.389 6.389 16 C 0.281 3.719 17 O -0.356 6.356 18 N -0.251 5.251 19 C -0.136 4.136 20 S 0.580 5.420 21 C -0.429 4.429 22 C -0.091 4.091 23 C -0.246 4.246 24 C 0.399 3.601 25 O -0.418 6.418 26 O -0.320 6.320 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.248 0.752 37 H 0.290 0.710 38 H 0.189 0.811 39 H 0.172 0.828 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -4.304 6.887 25.267 26.540 hybrid contribution 0.759 -0.545 1.087 1.433 sum -3.545 6.341 26.354 27.337 Atomic orbital electron populations 1.22336 0.97622 1.00041 1.00349 1.18746 0.92737 0.92379 0.93357 1.22397 1.01337 0.98180 0.98929 1.20658 1.34425 1.12449 0.87833 0.90393 1.24955 0.94570 0.97318 0.95746 1.69942 1.47865 1.35913 0.98775 0.87309 0.79431 0.85457 0.76147 1.21247 1.23301 1.17417 1.21836 0.99275 0.96189 0.81132 1.46195 1.50574 1.31511 1.04946 1.19270 0.82930 0.85341 0.84107 1.90833 1.36857 1.25069 1.86155 1.21159 0.80763 0.84777 0.85153 1.90679 1.35002 1.24622 1.85314 1.43026 1.48996 1.31001 1.02039 1.22272 1.01405 1.00953 0.89011 1.84401 1.42061 1.16497 0.99087 1.25972 1.09903 1.06027 1.00992 1.20845 0.95809 0.92670 0.99781 1.18895 1.13097 1.02030 0.90625 1.19858 0.77151 0.82905 0.80202 1.90840 1.49900 1.52156 1.48915 1.84579 1.68887 1.50634 1.27930 0.95710 0.92240 0.93235 0.92594 0.93770 0.94985 0.92442 0.90894 0.90797 0.75212 0.70954 0.81065 0.82798 0.72704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 7.53 37.16 0.28 -2.61 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.99 7.52 37.16 0.28 -2.71 16 4 C -0.52 -13.40 8.62 -34.44 -0.30 -13.69 16 5 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 6 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 8 Si 0.88 20.65 22.79 -169.99 -3.87 16.78 16 9 H -0.28 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.25 -5.27 4.65 56.52 0.26 -5.01 16 12 C 0.14 2.58 4.49 -4.04 -0.02 2.56 16 13 N -0.68 -10.90 5.00 -60.78 -0.30 -11.20 16 14 C 0.51 8.03 7.88 -11.66 -0.09 7.94 16 15 O -0.51 -9.40 16.48 5.48 0.09 -9.31 16 16 C 0.50 6.95 7.84 -11.66 -0.09 6.86 16 17 O -0.48 -6.67 13.89 5.48 0.08 -6.59 16 18 N -0.60 -7.87 5.31 -12.09 -0.06 -7.93 16 19 C 0.08 0.98 6.97 -14.96 -0.10 0.88 16 20 S 0.32 3.01 19.95 -107.50 -2.14 0.87 16 21 C -0.29 -2.12 11.09 28.83 0.32 -1.80 16 22 C -0.06 -0.51 10.13 -38.98 -0.39 -0.90 16 23 C -0.23 -2.41 6.00 -104.42 -0.63 -3.03 16 24 C 0.55 5.95 8.29 34.05 0.28 6.23 16 25 O -0.53 -7.07 15.24 -19.36 -0.29 -7.37 16 26 O -0.51 -3.72 13.16 -40.99 -0.54 -4.26 16 27 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 28 H 0.06 1.26 4.30 -51.93 -0.22 1.03 16 29 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 32 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.41 6.08 5.73 -40.82 -0.23 5.85 16 37 H 0.44 6.19 5.64 -40.82 -0.23 5.96 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.41 1.24 9.11 45.56 0.42 1.66 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -31.55 342.79 -5.09 -36.64 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.34 Total: 10.23 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.64 Total: 2.26 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.41 Total: -44.41 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.67 Total: -27.53 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.87 Total: 16.78 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.14 Total: 0.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.55 -5.09 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590614999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.755 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds