Wall clock time and date at job start Sat Apr 11 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.50706 * 109.46968 * 240.00013 * 2 1 3 5 5 H 1.08008 * 119.99725 * 241.34868 * 4 2 1 6 6 C 1.37868 * 120.00017 * 61.34973 * 4 2 1 7 7 N 1.31517 * 120.00260 * 193.97657 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 13.97566 * 6 4 2 9 9 H 1.48497 * 109.47084 * 84.54866 * 8 6 4 10 10 H 1.48506 * 109.47196 * 204.55046 * 8 6 4 11 11 H 1.48504 * 109.47035 * 324.54693 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00081 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99867 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21372 * 120.00270 * 359.97438 * 14 13 12 16 16 C 1.49297 * 119.99986 * 180.02562 * 14 13 12 17 17 O 1.21374 * 119.99856 * 0.02562 * 16 14 13 18 18 N 1.34775 * 119.99986 * 180.02562 * 16 14 13 19 19 C 1.38361 * 119.99836 * 180.02562 * 18 16 14 20 20 S 1.70440 * 124.66251 * 359.74501 * 19 18 16 21 21 C 1.75456 * 92.53875 * 179.97438 * 20 19 18 22 22 C 1.32580 * 110.83497 * 359.97438 * 21 20 19 23 23 C 1.37262 * 124.66202 * 179.45096 * 19 18 16 24 24 C 1.46477 * 123.60800 * 359.97438 * 23 19 18 25 25 O 1.21626 * 120.00465 * 0.02562 * 24 23 19 26 26 O 1.34884 * 119.99452 * 180.02562 * 24 23 19 27 27 H 1.08994 * 109.46985 * 309.36558 * 1 2 3 28 28 H 1.08996 * 109.46856 * 69.36746 * 1 2 3 29 29 H 1.08993 * 109.47116 * 189.36548 * 1 2 3 30 30 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46963 * 299.99716 * 3 2 1 32 32 H 1.08997 * 109.46993 * 60.00386 * 3 2 1 33 33 H 0.97001 * 120.00626 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46908 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46723 * 60.00019 * 12 2 1 36 36 H 0.97002 * 120.00057 * 0.02562 * 13 12 2 37 37 H 0.96999 * 120.00078 * 359.72177 * 18 16 14 38 38 H 1.07998 * 124.58384 * 179.97438 * 21 20 19 39 39 H 1.08005 * 123.41500 * 179.97438 * 22 21 20 40 40 H 0.96704 * 116.99232 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6011 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5755 -1.4777 3.7809 16 6 1.3796 0.2126 4.8885 17 8 0.6807 1.1987 4.7771 18 7 1.7060 -0.2473 6.1126 19 6 1.2440 0.4044 7.2423 20 16 0.2630 1.7980 7.2244 21 6 0.2035 1.8737 8.9763 22 6 0.8991 0.8819 9.5150 23 6 1.5078 0.0140 8.5315 24 6 2.3207 -1.1553 8.8743 25 8 2.8040 -1.8397 7.9926 26 8 2.5333 -1.4730 10.1678 27 1 -0.3633 0.6518 0.7945 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3633 -1.0139 0.1672 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6980 -0.6298 -4.4269 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9937 0.7578 2.3564 37 1 2.2613 -1.0376 6.2016 38 1 -0.3279 2.6265 9.5397 39 1 0.9988 0.7355 10.5805 40 1 3.0765 -2.2533 10.3446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590614999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:05 Heat of formation + Delta-G solvation = -133.648963 kcal Electronic energy + Delta-G solvation = -26786.330811 eV Core-core repulsion = 22692.826686 eV Total energy + Delta-G solvation = -4093.504125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39966 -41.29034 -40.25289 -38.56403 -38.43324 -37.11665 -36.10205 -35.03408 -33.48816 -30.48153 -28.56032 -28.02987 -27.23352 -26.84085 -24.93881 -22.96447 -22.43437 -21.45426 -21.05595 -19.71014 -19.48097 -18.76343 -18.17676 -17.86703 -17.55109 -17.14030 -16.98603 -16.74310 -16.44259 -16.10268 -15.97592 -15.43861 -15.12202 -14.96369 -14.72025 -14.45826 -14.17842 -14.13563 -14.04538 -13.77231 -13.29391 -13.28712 -13.03114 -12.63262 -12.40978 -12.25017 -12.19970 -12.02836 -11.97676 -11.79268 -11.67793 -11.10919 -10.89626 -10.63235 -10.42472 -10.31815 -9.59300 -9.39921 -8.30456 -6.32404 -0.77936 0.07829 0.21745 0.73027 0.84513 1.14280 1.37666 1.38731 1.51100 1.76933 2.04468 2.19381 2.33621 2.34662 3.05539 3.14435 3.78445 3.89234 3.98295 4.26768 4.37000 4.39758 4.56339 4.67947 4.76512 4.81373 4.82980 4.88827 4.99495 5.03873 5.09667 5.24771 5.25393 5.42047 5.46281 5.55101 5.67789 5.75396 5.99515 6.24013 6.31936 6.68548 6.75560 6.92230 7.32770 8.86267 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002519 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.447791 B =11113.455209 C =12075.047204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.027 3.973 3 C -0.152 4.152 4 C -0.516 4.516 5 H 0.034 0.966 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.206 1.206 12 C 0.151 3.849 13 N -0.672 5.672 14 C 0.509 3.491 15 O -0.541 6.541 16 C 0.508 3.492 17 O -0.482 6.482 18 N -0.600 5.600 19 C 0.048 3.952 20 S 0.316 5.684 21 C -0.269 4.269 22 C -0.070 4.070 23 C -0.229 4.229 24 C 0.553 3.447 25 O -0.561 6.561 26 O -0.497 6.497 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.420 0.580 37 H 0.438 0.562 38 H 0.206 0.794 39 H 0.179 0.821 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 8.743 30.559 32.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.554 4.554 5 H 0.052 0.948 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.770 3.230 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.129 1.129 12 C 0.028 3.972 13 N -0.325 5.325 14 C 0.288 3.712 15 O -0.419 6.419 16 C 0.289 3.711 17 O -0.356 6.356 18 N -0.250 5.250 19 C -0.171 4.171 20 S 0.579 5.421 21 C -0.404 4.404 22 C -0.096 4.096 23 C -0.249 4.249 24 C 0.399 3.601 25 O -0.455 6.455 26 O -0.310 6.310 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.259 0.741 37 H 0.283 0.717 38 H 0.223 0.777 39 H 0.196 0.804 40 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -5.983 9.711 28.883 31.054 hybrid contribution 1.334 -1.528 0.206 2.039 sum -4.649 8.183 29.089 30.574 Atomic orbital electron populations 1.22270 0.96091 1.00903 1.01038 1.18678 0.93835 0.93133 0.91733 1.22343 1.01346 0.96838 1.00325 1.20964 1.33026 1.11224 0.90201 0.94752 1.25803 0.95350 1.01373 0.95293 1.70099 1.50576 1.38215 0.99424 0.86394 0.79455 0.80214 0.76929 1.20886 1.24569 1.12941 1.21407 0.98540 0.95552 0.81704 1.45907 1.50721 1.31600 1.04227 1.19587 0.82086 0.84838 0.84655 1.90823 1.38028 1.26400 1.86673 1.20476 0.81132 0.84741 0.84753 1.90684 1.35141 1.24424 1.85400 1.42874 1.48914 1.30887 1.02297 1.22567 1.03369 1.02381 0.88800 1.84329 1.41142 1.15338 1.01307 1.26313 1.08677 1.05976 0.99444 1.21076 0.95767 0.92322 1.00464 1.19259 1.12541 1.02080 0.90992 1.20020 0.76659 0.82684 0.80701 1.90831 1.51313 1.53317 1.50056 1.84534 1.68924 1.51632 1.25890 0.91883 0.93405 0.93566 0.92937 0.94546 0.91097 0.92639 0.92000 0.92204 0.74070 0.71672 0.77668 0.80409 0.70504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 7.53 71.98 0.54 -4.87 16 2 C 0.03 1.12 0.50 -52.92 -0.03 1.10 16 3 C -0.15 -5.56 7.52 71.98 0.54 -5.02 16 4 C -0.52 -27.56 8.62 25.60 0.22 -27.34 16 5 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 6 C 0.02 1.09 5.32 84.65 0.45 1.54 16 7 N -0.94 -57.67 13.96 21.44 0.30 -57.37 16 8 Si 0.94 42.10 22.79 68.60 1.56 43.67 16 9 H -0.28 -12.38 7.10 99.48 0.71 -11.67 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.21 -7.80 4.65 99.48 0.46 -7.34 16 12 C 0.15 5.65 4.49 86.38 0.39 6.04 16 13 N -0.67 -20.49 5.00 -464.56 -2.32 -22.81 16 14 C 0.51 15.85 7.88 87.22 0.69 16.53 16 15 O -0.54 -20.10 16.48 -3.31 -0.05 -20.15 16 16 C 0.51 13.59 7.84 87.22 0.68 14.27 16 17 O -0.48 -12.34 13.89 -3.32 -0.05 -12.39 16 18 N -0.60 -15.42 5.31 -310.51 -1.65 -17.07 16 19 C 0.05 1.05 6.97 83.43 0.58 1.63 16 20 S 0.32 5.19 19.95 -56.49 -1.13 4.06 16 21 C -0.27 -2.80 11.09 66.67 0.74 -2.06 16 22 C -0.07 -0.87 10.13 22.74 0.23 -0.64 16 23 C -0.23 -4.41 6.00 -19.74 -0.12 -4.53 16 24 C 0.55 11.20 8.29 69.97 0.58 11.78 16 25 O -0.56 -15.02 15.24 19.43 0.30 -14.72 16 26 O -0.50 -6.16 13.16 -57.98 -0.76 -6.92 16 27 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 28 H 0.05 1.89 4.30 -2.39 -0.01 1.87 16 29 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.40 2.25 -2.39 -0.01 1.39 16 32 H 0.07 2.05 6.86 -2.39 -0.02 2.03 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.42 11.13 5.73 -92.71 -0.53 10.60 16 37 H 0.44 12.36 5.64 -92.71 -0.52 11.84 16 38 H 0.21 0.73 8.06 -2.91 -0.02 0.70 16 39 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.43 1.71 9.11 -74.05 -0.67 1.04 16 Total: -1.00 -71.51 342.79 0.88 -70.63 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.82 Total: 24.66 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.50 Total: 8.41 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -3.67 Total: -97.25 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.57 Total: -54.18 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.56 Total: 43.67 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.13 Total: 4.06 kcal Total: -71.51 0.88 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590614999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.014 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds