Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47435 * 2 1 4 4 H 1.09004 * 109.47150 * 304.63577 * 3 2 1 5 5 C 1.50695 * 109.47345 * 184.63348 * 3 2 1 6 6 H 1.08009 * 120.00004 * 245.47938 * 5 3 2 7 7 C 1.37874 * 120.00165 * 65.48142 * 5 3 2 8 8 N 1.31515 * 120.00017 * 196.81513 * 7 5 3 9 9 Si 1.86800 * 119.99960 * 16.81019 * 7 5 3 10 10 H 1.48502 * 109.47117 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47457 * 300.00249 * 9 7 5 12 12 H 1.48499 * 109.47076 * 60.00592 * 9 7 5 13 13 N 1.46501 * 109.46806 * 64.63017 * 3 2 1 14 14 C 1.34776 * 120.00129 * 275.00189 * 13 3 2 15 15 O 1.21362 * 120.00053 * 359.97438 * 14 13 3 16 16 C 1.49343 * 119.99600 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00703 * 359.97438 * 16 14 13 18 18 N 1.34776 * 119.99600 * 179.97438 * 16 14 13 19 19 C 1.39286 * 120.00359 * 182.20655 * 18 16 14 20 20 C 1.38185 * 123.51857 * 308.92138 * 19 18 16 21 21 C 1.50701 * 122.45355 * 359.97438 * 20 19 18 22 22 C 1.33549 * 115.08964 * 179.80340 * 20 19 18 23 23 S 1.70564 * 111.23248 * 0.45024 * 22 20 19 24 24 C 1.37603 * 123.52603 * 129.20760 * 19 18 16 25 25 C 1.41506 * 125.48840 * 359.96709 * 24 19 18 26 26 O 1.21706 * 120.00030 * 5.24197 * 25 24 19 27 27 O 1.34969 * 120.00391 * 185.24332 * 25 24 19 28 28 H 1.09004 * 109.47130 * 59.99676 * 1 2 3 29 29 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46757 * 299.99766 * 1 2 3 31 31 H 1.08999 * 109.47154 * 240.00593 * 2 1 3 32 32 H 1.08996 * 109.47760 * 120.00330 * 2 1 3 33 33 H 0.97002 * 120.00053 * 354.94040 * 8 7 5 34 34 H 0.97000 * 119.99762 * 95.00891 * 13 3 2 35 35 H 0.97011 * 120.00240 * 2.20981 * 18 16 14 36 36 H 1.09001 * 109.46987 * 96.33467 * 21 20 19 37 37 H 1.09000 * 109.47031 * 216.33817 * 21 20 19 38 38 H 1.09004 * 109.46937 * 336.34107 * 21 20 19 39 39 H 1.08002 * 124.38771 * 180.17495 * 22 20 19 40 40 H 0.96702 * 114.00793 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6105 1.9798 -0.8456 5 6 3.5426 1.4440 -0.1148 6 1 4.1463 1.8097 0.7028 7 6 4.1468 0.9786 -1.2634 8 7 5.4245 0.6671 -1.2545 9 14 3.1505 0.7905 -2.8323 10 1 4.0262 0.2770 -3.9162 11 1 2.0373 -0.1645 -2.6003 12 1 2.5963 2.1102 -3.2280 13 7 1.6449 2.1001 1.2480 14 6 0.4269 2.6673 1.3546 15 8 -0.3423 2.6336 0.4165 16 6 0.0244 3.3381 2.6267 17 8 0.7938 3.3722 3.5647 18 7 -1.1933 3.9057 2.7331 19 6 -1.5518 4.5713 3.9030 20 6 -1.4275 4.0193 5.1636 21 6 -0.8872 2.6306 5.3887 22 6 -1.8181 4.8079 6.1682 23 16 -2.3858 6.3089 5.5903 24 6 -2.0718 5.8451 3.9238 25 6 -2.3145 6.6520 2.7869 26 8 -2.1491 6.1962 1.6706 27 8 -2.7295 7.9271 2.9405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9587 0.8334 -0.4621 34 1 2.2599 2.1274 1.9977 35 1 -1.8204 3.8507 1.9949 36 1 0.1747 2.6883 5.6279 37 1 -1.4211 2.1626 6.2158 38 1 -1.0242 2.0365 4.4851 39 1 -1.7835 4.5295 7.2111 40 1 -2.8683 8.3987 2.1077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -124.692833 kcal Electronic energy + Delta-G solvation = -27597.862552 eV Core-core repulsion = 23504.746794 eV Total energy + Delta-G solvation = -4093.115758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29637 -40.25448 -39.10091 -37.68230 -36.27112 -35.60436 -34.27336 -32.48180 -31.51447 -31.37360 -28.11727 -27.55070 -26.10247 -24.06279 -22.38154 -21.72351 -21.00202 -19.70884 -19.29271 -19.06813 -18.55085 -17.85129 -17.28100 -16.63121 -16.33100 -15.93324 -15.68094 -15.46117 -15.07664 -14.49193 -14.23591 -13.99841 -13.69182 -13.54334 -13.38688 -12.79949 -12.68805 -12.53080 -12.39050 -12.34139 -12.18348 -11.80766 -11.77891 -11.44365 -11.34313 -10.98570 -10.92895 -10.77318 -10.49525 -10.32464 -9.95006 -9.65380 -9.28970 -9.11886 -9.08861 -8.46310 -8.38582 -8.30287 -6.63024 -4.27178 -0.12847 1.03024 1.44018 1.57107 1.92480 2.50831 2.71130 2.92433 3.34840 3.42365 3.53397 3.56678 3.94648 4.37932 4.55119 4.64058 4.93008 4.99453 5.11746 5.13101 5.35122 5.48665 5.58046 5.89630 5.97737 6.01144 6.07028 6.08831 6.16259 6.20857 6.56011 6.69107 6.79695 6.90031 6.95000 7.18014 7.27055 7.50025 7.53330 7.73959 8.17348 8.25671 8.49380 8.76250 9.42121 10.78260 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003034 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.095718 B = 9226.752066 C = 9811.063935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.620 4.620 6 H 0.064 0.936 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.661 5.661 14 C 0.497 3.503 15 O -0.524 6.524 16 C 0.511 3.489 17 O -0.498 6.498 18 N -0.633 5.633 19 C 0.240 3.760 20 C -0.111 4.111 21 C -0.088 4.088 22 C -0.218 4.218 23 S 0.270 5.730 24 C -0.310 4.310 25 C 0.554 3.446 26 O -0.500 6.500 27 O -0.508 6.508 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.432 0.568 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.178 0.822 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.267 9.864 15.347 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.658 4.658 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.866 3.134 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.310 5.310 14 C 0.275 3.725 15 O -0.402 6.402 16 C 0.294 3.706 17 O -0.371 6.371 18 N -0.284 5.284 19 C 0.128 3.872 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.356 4.356 23 S 0.539 5.461 24 C -0.431 4.431 25 C 0.398 3.602 26 O -0.391 6.391 27 O -0.319 6.319 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.273 0.727 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.569 10.290 14.502 25.710 hybrid contribution 0.478 -0.338 0.572 0.818 sum -18.091 9.952 15.074 25.565 Atomic orbital electron populations 1.21903 0.97353 0.99244 1.01767 1.22382 0.93808 0.99357 1.02363 1.19271 0.96163 0.88670 0.81606 0.93570 1.22070 0.89223 1.49651 1.04859 0.91747 1.25685 0.97338 0.92235 1.01348 1.70871 1.07796 1.40311 1.33724 0.84132 0.75577 0.77780 0.75867 1.20782 1.19419 1.20504 1.46179 1.13478 1.52536 1.18812 1.19544 0.84447 0.81356 0.87104 1.90758 1.51596 1.59017 1.38823 1.20949 0.81340 0.78831 0.89513 1.90756 1.50734 1.56336 1.39274 1.42871 1.16755 1.52513 1.16230 1.16783 0.94560 0.88299 0.87600 1.18627 1.03690 0.99759 0.90386 1.20588 1.01932 0.90099 1.02058 1.25126 1.06175 0.99868 1.04472 1.83093 1.57505 1.12231 0.93251 1.22361 1.23904 0.98183 0.98666 1.17883 0.74083 0.80509 0.87677 1.91030 1.48711 1.73463 1.25872 1.85002 1.80247 1.25285 1.41381 0.92714 0.94675 0.93742 0.90818 0.92686 0.91958 0.75932 0.72682 0.89397 0.91596 0.92036 0.80470 0.72805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.14 -3.05 5.29 -26.73 -0.14 -3.19 16 3 C 0.25 5.78 1.83 -69.08 -0.13 5.66 16 4 H 0.05 1.17 6.25 -51.93 -0.32 0.84 16 5 C -0.62 -16.66 9.01 -34.44 -0.31 -16.97 16 6 H 0.06 1.83 7.96 -52.48 -0.42 1.41 16 7 C 0.04 1.14 5.32 -17.82 -0.09 1.05 16 8 N -0.89 -26.41 13.70 55.43 0.76 -25.65 16 9 Si 1.04 24.62 26.29 -169.99 -4.47 20.15 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -5.86 5.66 56.52 0.32 -5.54 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.66 -13.71 5.01 -55.40 -0.28 -13.99 16 14 C 0.50 9.66 6.44 -11.64 -0.07 9.59 16 15 O -0.52 -10.98 13.61 5.49 0.07 -10.91 16 16 C 0.51 8.66 6.61 -11.64 -0.08 8.58 16 17 O -0.50 -8.70 13.31 5.48 0.07 -8.63 16 18 N -0.63 -9.40 4.28 -10.90 -0.05 -9.45 16 19 C 0.24 3.15 5.93 -84.72 -0.50 2.64 16 20 C -0.11 -1.24 5.40 -106.28 -0.57 -1.81 16 21 C -0.09 -0.97 8.30 36.01 0.30 -0.67 16 22 C -0.22 -1.81 10.65 29.09 0.31 -1.50 16 23 S 0.27 2.17 22.82 -107.50 -2.45 -0.28 16 24 C -0.31 -3.65 6.28 -38.57 -0.24 -3.90 16 25 C 0.55 6.72 8.07 31.98 0.26 6.97 16 26 O -0.50 -7.59 15.94 -19.43 -0.31 -7.90 16 27 O -0.51 -4.35 13.31 -41.23 -0.55 -4.89 16 28 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 31 H 0.07 1.66 4.76 -51.93 -0.25 1.41 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 34 H 0.41 8.04 8.00 -40.82 -0.33 7.71 16 35 H 0.43 6.39 7.39 -40.82 -0.30 6.09 16 36 H 0.09 1.07 7.20 -51.93 -0.37 0.69 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.76 6.74 -51.93 -0.35 0.41 16 39 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.41 1.83 8.98 45.56 0.41 2.24 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -32.65 347.77 -6.47 -39.12 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -3.56 Total: 13.23 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.96 Total: 3.96 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.43 Total: -49.09 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.71 Total: -32.33 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.47 Total: 20.15 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.45 Total: -0.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.65 -6.47 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.568 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds