Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47435 * 2 1 4 4 H 1.09004 * 109.47150 * 304.63577 * 3 2 1 5 5 C 1.50695 * 109.47345 * 184.63348 * 3 2 1 6 6 H 1.08009 * 120.00004 * 245.47938 * 5 3 2 7 7 C 1.37874 * 120.00165 * 65.48142 * 5 3 2 8 8 N 1.31515 * 120.00017 * 196.81513 * 7 5 3 9 9 Si 1.86800 * 119.99960 * 16.81019 * 7 5 3 10 10 H 1.48502 * 109.47117 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47457 * 300.00249 * 9 7 5 12 12 H 1.48499 * 109.47076 * 60.00592 * 9 7 5 13 13 N 1.46501 * 109.46806 * 64.63017 * 3 2 1 14 14 C 1.34776 * 120.00129 * 275.00189 * 13 3 2 15 15 O 1.21362 * 120.00053 * 359.97438 * 14 13 3 16 16 C 1.49343 * 119.99600 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00703 * 359.97438 * 16 14 13 18 18 N 1.34776 * 119.99600 * 179.97438 * 16 14 13 19 19 C 1.39286 * 120.00359 * 182.20655 * 18 16 14 20 20 C 1.38185 * 123.51857 * 308.92138 * 19 18 16 21 21 C 1.50701 * 122.45355 * 359.97438 * 20 19 18 22 22 C 1.33549 * 115.08964 * 179.80340 * 20 19 18 23 23 S 1.70564 * 111.23248 * 0.45024 * 22 20 19 24 24 C 1.37603 * 123.52603 * 129.20760 * 19 18 16 25 25 C 1.41506 * 125.48840 * 359.96709 * 24 19 18 26 26 O 1.21706 * 120.00030 * 5.24197 * 25 24 19 27 27 O 1.34969 * 120.00391 * 185.24332 * 25 24 19 28 28 H 1.09004 * 109.47130 * 59.99676 * 1 2 3 29 29 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46757 * 299.99766 * 1 2 3 31 31 H 1.08999 * 109.47154 * 240.00593 * 2 1 3 32 32 H 1.08996 * 109.47760 * 120.00330 * 2 1 3 33 33 H 0.97002 * 120.00053 * 354.94040 * 8 7 5 34 34 H 0.97000 * 119.99762 * 95.00891 * 13 3 2 35 35 H 0.97011 * 120.00240 * 2.20981 * 18 16 14 36 36 H 1.09001 * 109.46987 * 96.33467 * 21 20 19 37 37 H 1.09000 * 109.47031 * 216.33817 * 21 20 19 38 38 H 1.09004 * 109.46937 * 336.34107 * 21 20 19 39 39 H 1.08002 * 124.38771 * 180.17495 * 22 20 19 40 40 H 0.96702 * 114.00793 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6105 1.9798 -0.8456 5 6 3.5426 1.4440 -0.1148 6 1 4.1463 1.8097 0.7028 7 6 4.1468 0.9786 -1.2634 8 7 5.4245 0.6671 -1.2545 9 14 3.1505 0.7905 -2.8323 10 1 4.0262 0.2770 -3.9162 11 1 2.0373 -0.1645 -2.6003 12 1 2.5963 2.1102 -3.2280 13 7 1.6449 2.1001 1.2480 14 6 0.4269 2.6673 1.3546 15 8 -0.3423 2.6336 0.4165 16 6 0.0244 3.3381 2.6267 17 8 0.7938 3.3722 3.5647 18 7 -1.1933 3.9057 2.7331 19 6 -1.5518 4.5713 3.9030 20 6 -1.4275 4.0193 5.1636 21 6 -0.8872 2.6306 5.3887 22 6 -1.8181 4.8079 6.1682 23 16 -2.3858 6.3089 5.5903 24 6 -2.0718 5.8451 3.9238 25 6 -2.3145 6.6520 2.7869 26 8 -2.1491 6.1962 1.6706 27 8 -2.7295 7.9271 2.9405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9587 0.8334 -0.4621 34 1 2.2599 2.1274 1.9977 35 1 -1.8204 3.8507 1.9949 36 1 0.1747 2.6883 5.6279 37 1 -1.4211 2.1626 6.2158 38 1 -1.0242 2.0365 4.4851 39 1 -1.7835 4.5295 7.2111 40 1 -2.8683 8.3987 2.1077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -150.017678 kcal Electronic energy + Delta-G solvation = -27598.960720 eV Core-core repulsion = 23504.746794 eV Total energy + Delta-G solvation = -4094.213926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.43244 -41.33237 -40.40174 -38.83408 -37.34736 -37.11149 -35.43927 -34.48534 -33.20378 -32.27324 -29.45931 -28.84870 -27.27543 -25.33187 -24.19188 -22.59201 -22.42123 -21.42141 -20.48536 -20.26785 -19.66793 -19.06014 -18.74575 -17.82734 -17.59051 -17.10176 -16.88436 -16.69702 -16.27617 -15.86195 -15.46510 -15.15794 -14.99868 -14.76085 -14.54630 -14.53179 -14.36444 -14.08838 -13.65391 -13.48855 -13.23223 -13.11521 -12.78499 -12.70367 -12.64782 -12.50099 -12.29741 -12.14638 -11.85589 -11.80801 -11.43573 -11.35065 -11.14953 -10.77236 -10.50814 -10.05953 -9.91435 -9.24938 -8.84328 -6.49055 -0.97595 0.19653 0.28223 0.72552 1.02463 1.31792 1.45228 1.51465 1.69642 1.71992 2.07295 2.17468 2.40544 2.60540 2.98179 3.36063 3.80537 3.84675 4.25398 4.27650 4.33201 4.35818 4.47094 4.59645 4.68544 4.76414 4.76757 5.04130 5.07783 5.11791 5.14602 5.21601 5.26335 5.37916 5.39759 5.48922 5.58264 5.80293 5.96024 6.35031 6.45957 6.62364 6.76783 6.94800 7.27775 8.55917 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003034 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.095718 B = 9226.752066 C = 9811.063935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.033 0.967 5 C -0.620 4.620 6 H 0.037 0.963 7 C -0.003 4.003 8 N -0.924 5.924 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.237 1.237 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.499 3.501 15 O -0.539 6.539 16 C 0.518 3.482 17 O -0.508 6.508 18 N -0.623 5.623 19 C 0.208 3.792 20 C -0.138 4.138 21 C -0.084 4.084 22 C -0.201 4.201 23 S 0.358 5.642 24 C -0.341 4.341 25 C 0.556 3.444 26 O -0.542 6.542 27 O -0.496 6.496 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.258 0.742 34 H 0.408 0.592 35 H 0.430 0.570 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.215 0.785 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 10.781 17.274 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.051 0.949 5 C -0.657 4.657 6 H 0.055 0.945 7 C -0.204 4.204 8 N -0.559 5.559 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.161 1.161 12 H -0.199 1.199 13 N -0.317 5.317 14 C 0.278 3.722 15 O -0.417 6.417 16 C 0.300 3.700 17 O -0.382 6.382 18 N -0.273 5.273 19 C 0.096 3.904 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.340 4.340 23 S 0.628 5.372 24 C -0.461 4.461 25 C 0.402 3.598 26 O -0.436 6.436 27 O -0.309 6.309 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.244 0.756 35 H 0.270 0.730 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.231 0.769 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -21.319 11.257 16.482 29.204 hybrid contribution 1.234 -0.410 0.172 1.311 sum -20.085 10.847 16.654 28.256 Atomic orbital electron populations 1.21804 0.95204 1.00957 1.01433 1.22268 0.95646 0.97533 1.02115 1.19021 0.93798 0.90124 0.82444 0.94879 1.22241 0.91165 1.48476 1.03858 0.94473 1.26897 0.97452 0.91772 1.04239 1.70980 1.08835 1.42725 1.33316 0.83753 0.75470 0.78852 0.72740 1.20727 1.16119 1.19869 1.46005 1.14387 1.53195 1.18066 1.19911 0.83600 0.80640 0.88004 1.90738 1.51878 1.59339 1.39756 1.20271 0.82207 0.79316 0.88227 1.90751 1.51219 1.57148 1.39070 1.42667 1.15638 1.51931 1.17063 1.17114 0.96689 0.89189 0.87423 1.18666 1.05667 1.00407 0.90340 1.20514 1.01336 0.90325 1.02082 1.25617 1.03248 0.99477 1.05649 1.82835 1.54414 1.10565 0.89429 1.22650 1.24241 0.98102 1.01110 1.18039 0.73283 0.81211 0.87270 1.91008 1.50700 1.74412 1.27438 1.84955 1.79374 1.23839 1.42697 0.93358 0.91905 0.93782 0.91459 0.92540 0.93287 0.75622 0.72980 0.91055 0.88806 0.94136 0.76854 0.70687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.14 -5.84 5.29 30.59 0.16 -5.68 16 3 C 0.25 11.87 1.83 44.24 0.08 11.95 16 4 H 0.03 1.68 6.25 -2.39 -0.01 1.67 16 5 C -0.62 -34.18 9.01 25.60 0.23 -33.95 16 6 H 0.04 2.20 7.96 -2.91 -0.02 2.18 16 7 C 0.00 -0.15 5.32 84.65 0.45 0.30 16 8 N -0.92 -56.07 13.70 21.45 0.29 -55.78 16 9 Si 1.07 49.50 26.29 68.60 1.80 51.31 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.24 -9.73 5.66 99.48 0.56 -9.17 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.67 -28.22 5.01 -447.54 -2.24 -30.47 16 14 C 0.50 19.66 6.44 87.24 0.56 20.22 16 15 O -0.54 -22.73 13.61 -3.28 -0.04 -22.77 16 16 C 0.52 17.83 6.61 87.24 0.58 18.41 16 17 O -0.51 -18.00 13.31 -3.30 -0.04 -18.04 16 18 N -0.62 -18.71 4.28 -306.75 -1.31 -20.03 16 19 C 0.21 5.28 5.93 37.79 0.22 5.51 16 20 C -0.14 -2.84 5.40 -20.94 -0.11 -2.95 16 21 C -0.08 -1.75 8.30 71.24 0.59 -1.16 16 22 C -0.20 -2.57 10.65 66.76 0.71 -1.85 16 23 S 0.36 4.39 22.82 -56.49 -1.29 3.10 16 24 C -0.34 -7.45 6.28 22.93 0.14 -7.31 16 25 C 0.56 12.89 8.07 68.63 0.55 13.45 16 26 O -0.54 -16.53 15.94 19.16 0.31 -16.23 16 27 O -0.50 -7.44 13.31 -58.86 -0.78 -8.22 16 28 H 0.05 1.84 7.83 -2.38 -0.02 1.82 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.62 5.65 -2.39 -0.01 1.60 16 31 H 0.07 2.94 4.76 -2.39 -0.01 2.93 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 34 H 0.41 16.74 8.00 -92.71 -0.74 15.99 16 35 H 0.43 13.03 7.39 -92.70 -0.69 12.35 16 36 H 0.07 1.70 7.20 -2.39 -0.02 1.68 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 0.99 6.74 -2.39 -0.02 0.97 16 39 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.43 3.00 8.98 -74.06 -0.67 2.34 16 Total: -1.00 -72.84 347.77 0.35 -72.49 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.12 Total: 32.16 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.79 Total: 12.48 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.26 Total: -106.27 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -0.57 Total: -65.26 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.80 Total: 51.31 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.29 Total: 3.10 kcal Total: -72.84 0.35 -72.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.529 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds