Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.09000 * 109.46871 * 55.00197 * 3 2 1 5 5 C 1.50702 * 109.47238 * 174.99871 * 3 2 1 6 6 H 1.08001 * 119.99559 * 119.99560 * 5 3 2 7 7 C 1.37875 * 120.00304 * 300.00348 * 5 3 2 8 8 N 1.31519 * 119.99561 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47376 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46993 * 120.00158 * 9 7 5 12 12 H 1.48501 * 109.47041 * 239.99872 * 9 7 5 13 13 N 1.46498 * 109.47191 * 295.00041 * 3 2 1 14 14 C 1.34780 * 119.99607 * 85.00135 * 13 3 2 15 15 O 1.21359 * 120.00296 * 359.97438 * 14 13 3 16 16 C 1.49346 * 119.99693 * 180.27494 * 14 13 3 17 17 O 1.21380 * 119.99869 * 359.72482 * 16 14 13 18 18 N 1.34773 * 119.99848 * 179.72226 * 16 14 13 19 19 C 1.39291 * 120.00013 * 175.14975 * 18 16 14 20 20 C 1.38171 * 123.52209 * 312.16034 * 19 18 16 21 21 C 1.50705 * 122.45319 * 359.97438 * 20 19 18 22 22 C 1.33555 * 115.09632 * 179.76335 * 20 19 18 23 23 S 1.70558 * 111.22566 * 0.48841 * 22 20 19 24 24 C 1.37607 * 123.52163 * 132.44600 * 19 18 16 25 25 C 1.41501 * 125.49039 * 359.97097 * 24 19 18 26 26 O 1.21702 * 120.00119 * 4.87448 * 25 24 19 27 27 O 1.34973 * 120.00019 * 184.87200 * 25 24 19 28 28 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46760 * 300.00013 * 1 2 3 30 30 H 1.08994 * 109.46907 * 59.99610 * 1 2 3 31 31 H 1.08996 * 109.46776 * 240.00141 * 2 1 3 32 32 H 1.09002 * 109.47173 * 120.00340 * 2 1 3 33 33 H 0.97004 * 119.99518 * 180.02562 * 8 7 5 34 34 H 0.96992 * 120.00052 * 264.99834 * 13 3 2 35 35 H 0.96994 * 120.00003 * 355.14929 * 18 16 14 36 36 H 1.08996 * 109.47380 * 98.36998 * 21 20 19 37 37 H 1.09003 * 109.47423 * 218.37710 * 21 20 19 38 38 H 1.09004 * 109.46978 * 338.37374 * 21 20 19 39 39 H 1.07997 * 124.38553 * 180.21209 * 22 20 19 40 40 H 0.96701 * 114.00243 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8799 1.3810 10 1 6.5989 1.5441 0.1930 11 1 6.4001 1.6155 2.6091 12 1 6.4962 -0.5192 1.4625 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3400 2.6319 -0.4337 16 6 0.0378 3.3268 -2.6450 17 8 0.8130 3.3588 -3.5785 18 7 -1.1816 3.8888 -2.7620 19 6 -1.5157 4.5939 -3.9158 20 6 -0.7007 5.5522 -4.4873 21 6 0.6387 5.9257 -3.9063 22 6 -1.1850 6.1203 -5.5948 23 16 -2.7202 5.4915 -5.9907 24 6 -2.6943 4.4129 -4.6025 25 6 -3.7199 3.5044 -4.2489 26 8 -3.6379 2.8660 -3.2160 27 8 -4.7893 3.3459 -5.0570 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0605 2.9502 34 1 2.2720 2.1231 -1.9977 35 1 -1.8265 3.8023 -2.0427 36 1 1.4273 5.3982 -4.4429 37 1 0.7898 7.0008 -4.0030 38 1 0.6678 5.6481 -2.8526 39 1 -0.6729 6.8824 -6.1634 40 1 -5.4364 2.7050 -4.7320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -125.733212 kcal Electronic energy + Delta-G solvation = -27519.298110 eV Core-core repulsion = 23426.137238 eV Total energy + Delta-G solvation = -4093.160872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24185 -40.19226 -38.96022 -37.57802 -36.23849 -35.40623 -34.19874 -32.42485 -31.34131 -30.98162 -28.04397 -27.32467 -26.01928 -24.11432 -22.84730 -21.68803 -20.76632 -19.51936 -19.22044 -18.97129 -18.39089 -17.79392 -16.62076 -16.46981 -16.02092 -15.87112 -15.53524 -15.21291 -15.13514 -14.39146 -14.33770 -13.98331 -13.82591 -13.51779 -13.34188 -12.75079 -12.62499 -12.32788 -12.18078 -12.03621 -11.76246 -11.58416 -11.39951 -11.33501 -11.24832 -10.98512 -10.89201 -10.87932 -10.36610 -10.31373 -10.26902 -9.68767 -9.13906 -9.10264 -9.04082 -8.57314 -8.37063 -8.03483 -6.17880 -4.27603 -0.07560 1.08711 1.50209 1.63731 2.00670 2.58950 2.78425 2.96236 3.22229 3.30486 3.33873 3.67067 4.03715 4.32040 4.60962 4.69019 5.03621 5.08043 5.14539 5.19027 5.40631 5.52913 5.63643 5.94367 6.10960 6.13149 6.27187 6.34165 6.39673 6.57971 6.95354 6.99566 7.13452 7.16746 7.28870 7.49430 7.56843 7.62673 7.77123 7.86462 8.08249 8.43079 8.61603 8.85612 9.39188 10.87538 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002936 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.872030 B = 9534.906048 C =10678.520509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.496 3.504 15 O -0.523 6.523 16 C 0.510 3.490 17 O -0.499 6.499 18 N -0.633 5.633 19 C 0.245 3.755 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.216 4.216 23 S 0.266 5.734 24 C -0.315 4.315 25 C 0.555 3.445 26 O -0.503 6.503 27 O -0.508 6.508 28 H 0.026 0.974 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.433 0.567 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.178 0.822 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 11.032 -16.304 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.274 3.726 15 O -0.401 6.401 16 C 0.293 3.707 17 O -0.372 6.372 18 N -0.283 5.283 19 C 0.132 3.868 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.354 4.354 23 S 0.535 5.465 24 C -0.436 4.436 25 C 0.400 3.600 26 O -0.393 6.393 27 O -0.319 6.319 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.274 0.726 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.310 11.290 -17.102 24.436 hybrid contribution 1.532 -0.752 1.365 2.185 sum -11.779 10.538 -15.737 22.303 Atomic orbital electron populations 1.21860 0.98212 0.98488 1.01129 1.21968 0.92696 0.99365 1.02749 1.19031 0.94794 0.89411 0.80057 0.92691 1.21238 0.90276 1.39373 1.06553 0.91707 1.24878 0.98826 0.94618 0.95262 1.69900 1.35166 1.37457 1.09311 0.86355 0.84541 0.77840 0.78173 1.19632 1.20836 1.20817 1.46447 1.13348 1.52560 1.19268 1.19474 0.84585 0.81669 0.86858 1.90767 1.51017 1.58940 1.39329 1.21098 0.81114 0.78690 0.89823 1.90749 1.50738 1.55728 1.39987 1.42958 1.16709 1.51120 1.17534 1.16817 0.91441 0.90811 0.87714 1.18606 0.99739 0.96906 0.97434 1.20607 0.92110 1.01026 1.01054 1.25114 1.02127 1.06674 1.01474 1.83064 1.11977 1.29990 1.21518 1.22283 1.02227 1.12387 1.06700 1.17873 0.80636 0.80190 0.81304 1.91016 1.77914 1.45606 1.24803 1.85006 1.32719 1.62747 1.51450 0.95457 0.92914 0.94561 0.94676 0.87833 0.92493 0.76429 0.72570 0.89463 0.91496 0.91960 0.80486 0.72876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.67 -14.11 5.01 -55.40 -0.28 -14.39 16 14 C 0.50 9.98 6.45 -11.63 -0.08 9.91 16 15 O -0.52 -11.56 13.62 5.49 0.07 -11.48 16 16 C 0.51 8.88 6.31 -11.64 -0.07 8.81 16 17 O -0.50 -8.86 13.49 5.47 0.07 -8.79 16 18 N -0.63 -9.78 4.41 -10.90 -0.05 -9.83 16 19 C 0.25 3.32 5.96 -84.73 -0.50 2.82 16 20 C -0.11 -1.32 5.40 -106.28 -0.57 -1.89 16 21 C -0.09 -1.04 8.31 36.01 0.30 -0.74 16 22 C -0.22 -1.86 10.65 29.09 0.31 -1.55 16 23 S 0.27 2.21 22.82 -107.50 -2.45 -0.25 16 24 C -0.32 -3.80 6.28 -38.57 -0.24 -4.04 16 25 C 0.55 6.82 8.07 31.97 0.26 7.08 16 26 O -0.50 -7.69 15.86 -19.42 -0.31 -7.99 16 27 O -0.51 -4.40 13.31 -41.24 -0.55 -4.95 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 30 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.40 7.91 8.01 -40.82 -0.33 7.58 16 35 H 0.43 6.76 7.24 -40.82 -0.30 6.47 16 36 H 0.09 1.09 7.33 -51.93 -0.38 0.71 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 39 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.41 1.85 8.98 45.56 0.41 2.26 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -31.24 351.93 -7.13 -38.37 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -3.57 Total: 13.88 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.98 Total: 8.29 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.30 Total: -47.70 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.71 Total: -33.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.45 Total: -0.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.24 -7.13 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.364 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds