Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.09000 * 109.46871 * 55.00197 * 3 2 1 5 5 C 1.50702 * 109.47238 * 174.99871 * 3 2 1 6 6 H 1.08001 * 119.99559 * 119.99560 * 5 3 2 7 7 C 1.37875 * 120.00304 * 300.00348 * 5 3 2 8 8 N 1.31519 * 119.99561 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47376 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46993 * 120.00158 * 9 7 5 12 12 H 1.48501 * 109.47041 * 239.99872 * 9 7 5 13 13 N 1.46498 * 109.47191 * 295.00041 * 3 2 1 14 14 C 1.34780 * 119.99607 * 85.00135 * 13 3 2 15 15 O 1.21359 * 120.00296 * 359.97438 * 14 13 3 16 16 C 1.49346 * 119.99693 * 180.27494 * 14 13 3 17 17 O 1.21380 * 119.99869 * 359.72482 * 16 14 13 18 18 N 1.34773 * 119.99848 * 179.72226 * 16 14 13 19 19 C 1.39291 * 120.00013 * 175.14975 * 18 16 14 20 20 C 1.38171 * 123.52209 * 312.16034 * 19 18 16 21 21 C 1.50705 * 122.45319 * 359.97438 * 20 19 18 22 22 C 1.33555 * 115.09632 * 179.76335 * 20 19 18 23 23 S 1.70558 * 111.22566 * 0.48841 * 22 20 19 24 24 C 1.37607 * 123.52163 * 132.44600 * 19 18 16 25 25 C 1.41501 * 125.49039 * 359.97097 * 24 19 18 26 26 O 1.21702 * 120.00119 * 4.87448 * 25 24 19 27 27 O 1.34973 * 120.00019 * 184.87200 * 25 24 19 28 28 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46760 * 300.00013 * 1 2 3 30 30 H 1.08994 * 109.46907 * 59.99610 * 1 2 3 31 31 H 1.08996 * 109.46776 * 240.00141 * 2 1 3 32 32 H 1.09002 * 109.47173 * 120.00340 * 2 1 3 33 33 H 0.97004 * 119.99518 * 180.02562 * 8 7 5 34 34 H 0.96992 * 120.00052 * 264.99834 * 13 3 2 35 35 H 0.96994 * 120.00003 * 355.14929 * 18 16 14 36 36 H 1.08996 * 109.47380 * 98.36998 * 21 20 19 37 37 H 1.09003 * 109.47423 * 218.37710 * 21 20 19 38 38 H 1.09004 * 109.46978 * 338.37374 * 21 20 19 39 39 H 1.07997 * 124.38553 * 180.21209 * 22 20 19 40 40 H 0.96701 * 114.00243 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8799 1.3810 10 1 6.5989 1.5441 0.1930 11 1 6.4001 1.6155 2.6091 12 1 6.4962 -0.5192 1.4625 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3400 2.6319 -0.4337 16 6 0.0378 3.3268 -2.6450 17 8 0.8130 3.3588 -3.5785 18 7 -1.1816 3.8888 -2.7620 19 6 -1.5157 4.5939 -3.9158 20 6 -0.7007 5.5522 -4.4873 21 6 0.6387 5.9257 -3.9063 22 6 -1.1850 6.1203 -5.5948 23 16 -2.7202 5.4915 -5.9907 24 6 -2.6943 4.4129 -4.6025 25 6 -3.7199 3.5044 -4.2489 26 8 -3.6379 2.8660 -3.2160 27 8 -4.7893 3.3459 -5.0570 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0605 2.9502 34 1 2.2720 2.1231 -1.9977 35 1 -1.8265 3.8023 -2.0427 36 1 1.4273 5.3982 -4.4429 37 1 0.7898 7.0008 -4.0030 38 1 0.6678 5.6481 -2.8526 39 1 -0.6729 6.8824 -6.1634 40 1 -5.4364 2.7050 -4.7320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -148.756801 kcal Electronic energy + Delta-G solvation = -27520.296488 eV Core-core repulsion = 23426.137238 eV Total energy + Delta-G solvation = -4094.159250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40606 -41.28987 -40.32530 -38.78713 -37.21962 -37.09134 -35.41178 -34.31318 -32.85698 -32.26431 -29.29831 -28.81194 -27.24695 -25.55030 -24.56234 -22.57307 -22.28401 -21.33289 -20.29620 -20.15690 -19.55382 -18.72786 -18.22733 -17.72152 -17.46170 -17.07191 -16.80917 -16.73966 -16.33747 -16.01842 -15.56865 -15.07659 -15.01532 -14.78633 -14.63936 -14.34097 -13.92853 -13.56850 -13.45444 -13.23801 -13.22061 -13.04463 -12.94850 -12.74235 -12.66929 -12.61465 -12.19235 -12.12929 -12.10570 -11.83815 -11.63271 -11.39615 -11.11032 -10.70954 -10.56333 -9.89358 -9.86811 -9.19676 -8.18882 -6.36168 -0.95398 0.26292 0.30163 0.74426 1.05483 1.36653 1.44690 1.47209 1.58550 1.74331 2.13035 2.20015 2.39370 2.69915 3.11057 3.45946 3.81471 3.85843 4.26594 4.34006 4.45018 4.51208 4.60820 4.68132 4.69534 4.77418 4.99248 5.05717 5.15368 5.18848 5.27442 5.33381 5.36360 5.39990 5.54587 5.65299 5.75878 5.88813 6.09015 6.43418 6.65763 6.74261 6.78920 7.08208 7.35731 8.86755 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002936 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.872030 B = 9534.906048 C =10678.520509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.014 0.986 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.668 5.668 14 C 0.495 3.505 15 O -0.546 6.546 16 C 0.520 3.480 17 O -0.505 6.505 18 N -0.626 5.626 19 C 0.211 3.789 20 C -0.141 4.141 21 C -0.085 4.085 22 C -0.198 4.198 23 S 0.358 5.642 24 C -0.344 4.344 25 C 0.557 3.443 26 O -0.544 6.544 27 O -0.495 6.495 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.267 0.733 34 H 0.409 0.591 35 H 0.428 0.572 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.215 0.785 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 12.469 -19.294 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.032 0.968 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.317 5.317 14 C 0.275 3.725 15 O -0.425 6.425 16 C 0.301 3.699 17 O -0.379 6.379 18 N -0.275 5.275 19 C 0.099 3.901 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.337 4.337 23 S 0.628 5.372 24 C -0.464 4.464 25 C 0.403 3.597 26 O -0.438 6.438 27 O -0.308 6.308 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.269 0.731 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.232 0.768 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -13.654 12.753 -20.157 27.484 hybrid contribution 1.431 -1.098 2.147 2.804 sum -12.222 11.655 -18.010 24.690 Atomic orbital electron populations 1.21712 0.96878 0.99600 1.00227 1.21826 0.93801 0.98740 1.01780 1.18657 0.94281 0.89436 0.80234 0.96773 1.21536 0.90974 1.39492 1.06954 0.91148 1.25716 1.03331 0.94144 0.94858 1.70031 1.37012 1.38031 1.09790 0.85309 0.79015 0.77889 0.78210 1.18720 1.20744 1.20373 1.46202 1.14147 1.52943 1.18449 1.19947 0.83795 0.80977 0.87809 1.90746 1.51558 1.59606 1.40610 1.20294 0.82070 0.79094 0.88407 1.90738 1.51122 1.56397 1.39642 1.42749 1.15456 1.50779 1.18475 1.17150 0.93048 0.92129 0.87787 1.18628 0.99920 0.97871 0.99009 1.20531 0.92114 1.02571 0.99174 1.25604 1.02237 1.05862 0.99971 1.82792 1.10318 1.26471 1.17661 1.22587 1.01639 1.13565 1.08642 1.18017 0.81159 0.79617 0.80869 1.90999 1.78911 1.47264 1.26587 1.84955 1.32223 1.63188 1.50432 0.93241 0.94623 0.94572 0.94090 0.90111 0.92379 0.75520 0.73089 0.90724 0.88783 0.94621 0.76799 0.70715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.90 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H 0.01 0.85 7.58 -2.39 -0.02 0.83 16 5 C -0.55 -29.20 8.73 25.60 0.22 -28.98 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 1.08 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.09 11.29 21.45 0.24 -50.85 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.67 -29.26 5.01 -447.54 -2.24 -31.50 16 14 C 0.50 20.79 6.45 87.24 0.56 21.35 16 15 O -0.55 -25.41 13.62 -3.28 -0.04 -25.45 16 16 C 0.52 18.67 6.31 87.24 0.55 19.22 16 17 O -0.50 -18.19 13.49 -3.34 -0.05 -18.23 16 18 N -0.63 -19.94 4.41 -306.75 -1.35 -21.29 16 19 C 0.21 5.61 5.96 37.79 0.23 5.84 16 20 C -0.14 -3.06 5.40 -20.94 -0.11 -3.18 16 21 C -0.09 -1.91 8.31 71.24 0.59 -1.32 16 22 C -0.20 -2.66 10.65 66.76 0.71 -1.94 16 23 S 0.36 4.55 22.82 -56.49 -1.29 3.26 16 24 C -0.34 -7.75 6.28 22.93 0.14 -7.61 16 25 C 0.56 13.17 8.07 68.62 0.55 13.72 16 26 O -0.54 -16.88 15.86 19.17 0.30 -16.57 16 27 O -0.50 -7.52 13.31 -58.91 -0.78 -8.30 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.03 1.70 7.85 -2.38 -0.02 1.68 16 30 H 0.04 1.61 5.64 -2.39 -0.01 1.60 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 4.40 5.95 -2.39 -0.01 4.38 16 33 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.41 16.52 8.01 -92.71 -0.74 15.78 16 35 H 0.43 14.13 7.24 -92.71 -0.67 13.46 16 36 H 0.07 1.82 7.33 -2.39 -0.02 1.81 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.03 0.97 6.47 -2.38 -0.02 0.95 16 39 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.43 3.06 8.98 -74.06 -0.67 2.39 16 Total: -1.00 -70.09 351.93 0.66 -69.42 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.93 Total: 33.75 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 4.78 Total: 21.84 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.35 Total: -103.64 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -0.57 Total: -68.56 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.29 Total: 3.26 kcal Total: -70.09 0.66 -69.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.332 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds