Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47099 * 2 1 4 4 C 1.46498 * 119.99903 * 264.99605 * 3 2 1 5 5 C 1.50702 * 109.46696 * 263.14477 * 4 3 2 6 6 H 1.07994 * 120.00504 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99609 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47116 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47488 * 120.00151 * 9 7 5 12 12 H 1.48503 * 109.47235 * 240.00387 * 9 7 5 13 13 C 1.34771 * 119.99729 * 84.99599 * 3 2 1 14 14 O 1.21368 * 120.00191 * 4.03067 * 13 3 2 15 15 C 1.49305 * 120.00087 * 184.03144 * 13 3 2 16 16 O 1.21378 * 119.99514 * 354.69330 * 15 13 3 17 17 N 1.34773 * 120.00151 * 174.70172 * 15 13 3 18 18 C 1.38354 * 119.99591 * 180.02562 * 17 15 13 19 19 S 1.70448 * 124.66849 * 359.95369 * 18 17 15 20 20 C 1.75456 * 92.54352 * 180.02562 * 19 18 17 21 21 C 1.32593 * 110.83238 * 359.75334 * 20 19 18 22 22 C 1.50695 * 123.41253 * 180.23887 * 21 20 19 23 23 C 1.37267 * 124.66062 * 179.97438 * 18 17 15 24 24 C 1.46473 * 123.61255 * 359.92488 * 23 18 17 25 25 O 1.21640 * 120.00097 * 90.02387 * 24 23 18 26 26 O 1.34879 * 119.99945 * 270.02692 * 24 23 18 27 27 H 1.09000 * 109.47170 * 60.00189 * 1 2 3 28 28 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46943 * 300.00151 * 1 2 3 30 30 H 1.08997 * 109.46943 * 239.99849 * 2 1 3 31 31 H 1.09000 * 109.46854 * 120.00256 * 2 1 3 32 32 H 1.08996 * 109.47205 * 23.14791 * 4 3 2 33 33 H 1.08998 * 109.46850 * 143.14967 * 4 3 2 34 34 H 0.97005 * 119.99545 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00065 * 359.97438 * 17 15 13 36 36 H 1.07997 * 124.58175 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46890 * 270.19668 * 22 21 20 38 38 H 1.08999 * 109.47566 * 30.19964 * 22 21 20 39 39 H 1.09004 * 109.47150 * 150.19963 * 22 21 20 40 40 H 0.96698 * 116.99843 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3669 2.0349 -1.2639 5 6 3.8533 1.9315 -1.4897 6 1 4.4760 1.4288 -0.7645 7 6 4.4182 2.4788 -2.6221 8 7 3.6599 3.0914 -3.5050 9 14 6.2605 2.3501 -2.9024 10 1 6.8835 1.6180 -1.7705 11 1 6.5188 1.6167 -4.1676 12 1 6.8440 3.7127 -2.9923 13 6 2.1470 2.0504 1.1627 14 8 1.9285 1.4864 2.2150 15 6 2.5582 3.4857 1.1565 16 8 2.8698 4.0231 0.1137 17 7 2.5836 4.1845 2.3087 18 6 2.9642 5.5146 2.3027 19 16 3.4241 6.3852 0.9113 20 6 3.7050 7.8545 1.8282 21 6 3.4495 7.6634 3.1152 22 6 3.5924 8.7412 4.1586 23 6 3.0237 6.3146 3.4165 24 6 2.6860 5.8533 4.7651 25 8 3.5478 5.3750 5.4779 26 8 1.4194 5.9589 5.2165 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8400 1.5459 -2.0832 33 1 2.0780 3.0851 -1.2215 34 1 4.0575 3.4768 -4.3015 35 1 2.3344 3.7550 3.1419 36 1 4.0373 8.7893 1.4014 37 1 4.6055 8.7259 4.5605 38 1 3.3956 9.7132 3.7063 39 1 2.8793 8.5642 4.9638 40 1 0.7695 6.3458 4.6140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -111.199706 kcal Electronic energy + Delta-G solvation = -27709.250986 eV Core-core repulsion = 23616.720334 eV Total energy + Delta-G solvation = -4092.530652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88227 -40.08496 -38.49979 -37.40928 -36.42370 -35.97688 -34.68089 -32.79099 -30.68445 -30.32135 -27.89560 -27.21812 -25.81490 -24.01582 -23.13743 -22.40430 -21.57987 -20.43718 -19.44593 -18.33430 -17.63484 -16.82523 -16.61214 -16.43143 -16.09627 -15.70251 -15.55468 -15.13459 -14.73888 -14.45684 -14.33352 -13.98122 -13.88704 -13.65106 -13.51434 -13.15447 -12.58558 -12.50330 -12.42494 -12.12540 -12.08460 -11.96645 -11.79706 -11.55878 -11.16973 -11.00470 -10.85323 -10.70896 -10.66532 -10.53708 -10.24063 -10.07112 -9.78485 -9.01562 -8.44351 -8.32997 -8.16876 -7.97505 -6.14771 -4.18538 0.79175 1.33572 1.79550 1.88846 2.20948 2.24885 2.51739 3.23379 3.31841 3.35690 3.37080 3.55052 3.82393 4.35290 4.49379 4.70643 4.78290 5.00090 5.21770 5.30690 5.40231 5.43905 5.45417 5.56358 5.66313 5.67892 5.89863 6.05437 6.15082 6.22010 6.28280 6.42475 6.53157 6.83837 7.12796 7.16984 7.27260 7.55170 7.73366 7.83911 7.94040 8.06552 8.38285 8.83351 9.45822 10.93613 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.004461 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.924089 B = 6274.858925 C = 8026.050236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.552 5.552 4 C 0.219 3.781 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.513 3.487 14 O -0.553 6.553 15 C 0.484 3.516 16 O -0.414 6.414 17 N -0.621 5.621 18 C 0.066 3.934 19 S 0.330 5.670 20 C -0.298 4.298 21 C -0.046 4.046 22 C -0.096 4.096 23 C -0.282 4.282 24 C 0.569 3.431 25 O -0.457 6.457 26 O -0.508 6.508 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.424 0.576 36 H 0.167 0.833 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 8.282 8.731 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.282 5.282 4 C 0.100 3.900 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.294 3.706 14 O -0.434 6.434 15 C 0.266 3.734 16 O -0.282 6.282 17 N -0.267 5.267 18 C -0.153 4.153 19 S 0.595 5.405 20 C -0.433 4.433 21 C -0.057 4.057 22 C -0.155 4.155 23 C -0.302 4.302 24 C 0.407 3.593 25 O -0.341 6.341 26 O -0.318 6.318 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.262 0.738 36 H 0.184 0.816 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.406 7.483 7.510 11.901 hybrid contribution 0.580 0.333 1.186 1.361 sum -4.827 7.816 8.696 12.649 Atomic orbital electron populations 1.22120 0.96069 1.01881 1.02226 1.21485 0.93896 0.82409 1.03395 1.48331 1.58530 1.13170 1.08214 1.20174 0.96631 0.95308 0.77880 1.21269 0.91966 1.36830 1.06274 0.92617 1.24795 0.97980 0.94646 0.95679 1.69924 1.35195 1.36567 1.10816 0.86546 0.85443 0.78001 0.78099 1.19847 1.20903 1.20723 1.19221 0.80276 0.86088 0.84981 1.90705 1.52698 1.69028 1.30935 1.20944 0.80041 0.89376 0.83014 1.90871 1.40069 1.68838 1.28402 1.42672 1.64374 1.07072 1.12617 1.22050 1.03002 0.89026 1.01220 1.84863 1.59724 0.95590 1.00356 1.25871 1.13277 1.05897 0.98287 1.19190 1.00156 0.91763 0.94601 1.20513 1.02652 0.95914 0.96416 1.19883 1.21935 0.95689 0.92678 1.19539 0.80657 0.74551 0.84593 1.90918 1.44164 1.39949 1.59027 1.84553 1.20396 1.77231 1.49588 0.92257 0.91771 0.92632 0.89394 0.90600 0.94606 0.90827 0.92734 0.73756 0.81578 0.90777 0.90848 0.91906 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 10.20 37.16 0.38 -1.92 16 2 C 0.11 1.85 6.08 -4.04 -0.02 1.82 16 3 N -0.55 -11.07 2.49 -175.63 -0.44 -11.51 16 4 C 0.22 5.08 4.75 -5.19 -0.02 5.05 16 5 C -0.52 -13.61 8.36 -34.44 -0.29 -13.90 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 8 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 10.18 7.63 -11.66 -0.09 10.09 16 14 O -0.55 -11.16 16.12 5.48 0.09 -11.07 16 15 C 0.48 9.20 7.73 -11.66 -0.09 9.11 16 16 O -0.41 -8.75 9.80 5.47 0.05 -8.70 16 17 N -0.62 -10.02 5.35 -12.08 -0.06 -10.09 16 18 C 0.07 1.00 6.98 -14.96 -0.10 0.90 16 19 S 0.33 4.89 19.95 -107.50 -2.14 2.75 16 20 C -0.30 -3.48 10.88 28.83 0.31 -3.17 16 21 C -0.05 -0.54 6.01 -104.01 -0.62 -1.17 16 22 C -0.10 -0.87 9.96 36.00 0.36 -0.51 16 23 C -0.28 -3.81 5.67 -104.42 -0.59 -4.41 16 24 C 0.57 7.99 6.67 34.05 0.23 8.22 16 25 O -0.46 -8.23 17.96 -19.37 -0.35 -8.58 16 26 O -0.51 -5.45 13.49 -40.98 -0.55 -6.00 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 31 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 32 H 0.04 0.86 8.02 -51.93 -0.42 0.44 16 33 H 0.07 1.82 5.37 -51.93 -0.28 1.54 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.42 6.44 7.64 -40.82 -0.31 6.13 16 36 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 40 H 0.42 2.20 8.96 45.56 0.41 2.61 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -32.19 363.78 -6.75 -38.94 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.89 Total: 4.55 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.66 Total: 11.93 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.24 Total: -45.15 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.76 Total: -34.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.14 Total: 2.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.19 -6.75 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.259 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds