Wall clock time and date at job start Sat Apr 11 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33557 * 122.45500 * 2 1 4 4 S 1.70558 * 111.23062 * 179.97438 * 3 2 1 5 5 C 1.75819 * 91.69972 * 0.02562 * 4 3 2 6 6 C 1.41496 * 125.49038 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00338 * 174.70546 * 6 5 4 8 8 O 1.34971 * 120.00174 * 354.70325 * 6 5 4 9 9 C 1.37616 * 109.01861 * 359.97438 * 5 4 3 10 10 N 1.39285 * 123.51696 * 180.02562 * 9 5 4 11 11 C 1.34781 * 119.99724 * 116.45058 * 10 9 5 12 12 O 1.21374 * 120.00079 * 4.99405 * 11 10 9 13 13 C 1.49343 * 120.00127 * 184.98721 * 11 10 9 14 14 O 1.21369 * 119.99435 * 0.02562 * 13 11 10 15 15 N 1.34769 * 120.00246 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00240 * 180.02562 * 15 13 11 17 17 C 1.52995 * 109.47326 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47174 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.46851 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00462 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99659 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99902 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00037 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47349 * 89.99781 * 23 21 19 25 25 H 1.48499 * 109.47154 * 209.99858 * 23 21 19 26 26 H 1.48503 * 109.47007 * 329.99568 * 23 21 19 27 27 H 1.09001 * 109.47180 * 277.21732 * 1 2 3 28 28 H 1.09002 * 109.47020 * 37.21570 * 1 2 3 29 29 H 1.08995 * 109.47291 * 157.21654 * 1 2 3 30 30 H 1.07997 * 124.37900 * 359.97438 * 3 2 1 31 31 H 0.96696 * 114.00292 * 179.97438 * 8 6 5 32 32 H 0.96996 * 120.00291 * 296.45035 * 10 9 5 33 33 H 0.97001 * 120.00126 * 359.97438 * 15 13 11 34 34 H 1.09002 * 109.46900 * 299.99892 * 16 15 13 35 35 H 1.08997 * 109.47152 * 59.99156 * 16 15 13 36 36 H 1.09002 * 109.47179 * 299.99888 * 17 16 15 37 37 H 1.09000 * 109.47112 * 59.99313 * 17 16 15 38 38 H 1.09006 * 109.46951 * 299.99579 * 18 17 16 39 39 H 1.08996 * 109.46890 * 59.99902 * 18 17 16 40 40 H 0.96993 * 119.99878 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2237 1.1270 0.0000 4 16 3.8966 0.7950 0.0007 5 6 3.6057 -0.9390 0.0002 6 6 4.6060 -1.9398 0.0010 7 8 4.2938 -3.1121 0.0978 8 8 5.9064 -1.5943 -0.1057 9 6 2.2484 -1.1660 0.0001 10 7 1.6814 -2.4382 0.0003 11 6 0.9320 -2.8418 1.0454 12 8 0.6760 -2.0669 1.9437 13 6 0.4167 -4.2425 1.0979 14 8 0.6731 -5.0175 0.1997 15 7 -0.3330 -4.6460 2.1426 16 6 -0.8381 -6.0202 2.1945 17 6 -1.6528 -6.2163 3.4745 18 6 -2.1808 -7.6513 3.5283 19 6 -2.9838 -7.8441 4.7888 20 1 -3.1051 -7.0252 5.4825 21 6 -3.5637 -9.0661 5.0566 22 7 -4.2641 -9.2346 6.1570 23 14 -3.3534 -10.4826 3.8572 24 1 -2.1397 -11.2592 4.2163 25 1 -4.5443 -11.3673 3.9224 26 1 -3.2091 -9.9475 2.4795 27 1 -0.3633 0.1291 1.0195 28 1 -0.3633 0.8184 -0.6216 29 1 -0.3633 -0.9474 -0.3979 30 1 1.7988 2.1199 -0.0004 31 1 6.5150 -2.3456 -0.0955 32 1 1.8257 -3.0336 -0.7516 33 1 -0.5376 -4.0267 2.8607 34 1 -1.4720 -6.2072 1.3277 35 1 0.0008 -6.7161 2.1879 36 1 -1.0185 -6.0294 4.3411 37 1 -2.4916 -5.5203 3.4815 38 1 -2.8153 -7.8377 2.6617 39 1 -1.3422 -8.3475 3.5212 40 1 -4.6717 -10.0942 6.3455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607923465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:47 Heat of formation + Delta-G solvation = -130.597978 kcal Electronic energy + Delta-G solvation = -26200.458870 eV Core-core repulsion = 22107.087046 eV Total energy + Delta-G solvation = -4093.371825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47258 -40.46229 -39.33963 -37.96779 -36.43002 -35.86582 -34.50155 -33.31679 -31.62544 -31.48959 -28.32916 -27.74918 -26.26203 -24.40174 -22.60400 -21.84336 -20.95245 -20.36088 -19.60867 -19.12715 -18.54858 -18.02132 -16.91454 -16.74115 -16.61816 -16.18164 -15.97003 -15.62379 -15.33407 -14.91834 -14.48777 -14.30425 -14.13583 -13.85266 -13.74463 -13.59683 -12.95255 -12.72658 -12.55291 -12.48131 -12.09049 -11.97522 -11.95857 -11.84495 -11.56438 -11.12133 -11.10303 -10.92113 -10.31922 -10.19847 -10.00053 -9.80490 -9.62361 -9.32050 -9.24231 -9.09519 -8.77416 -8.56193 -6.06689 -4.05634 -0.32105 0.82337 1.18134 1.31861 1.63437 2.22782 2.45022 2.72908 3.09156 3.30881 3.38451 3.42006 3.48476 4.29352 4.43688 4.44427 4.47367 4.81770 4.92775 5.16216 5.27055 5.31072 5.34483 5.42744 5.56434 5.72437 5.78925 5.92620 5.92748 5.99786 6.13103 6.38423 6.51247 6.68784 6.73661 7.19660 7.24508 7.33311 7.36444 7.55162 7.74627 7.92546 8.49641 8.97363 9.55150 11.06514 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.002055 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.103970 B =13624.229470 C =14304.492258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.110 4.110 3 C -0.222 4.222 4 S 0.284 5.716 5 C -0.297 4.297 6 C 0.552 3.448 7 O -0.495 6.495 8 O -0.507 6.507 9 C 0.230 3.770 10 N -0.635 5.635 11 C 0.519 3.481 12 O -0.498 6.498 13 C 0.507 3.493 14 O -0.517 6.517 15 N -0.689 5.689 16 C 0.112 3.888 17 C -0.115 4.115 18 C -0.011 4.011 19 C -0.523 4.523 20 H 0.073 0.927 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.179 0.821 31 H 0.415 0.585 32 H 0.428 0.572 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.405 24.743 -16.935 35.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.360 4.360 4 S 0.554 5.446 5 C -0.418 4.418 6 C 0.396 3.604 7 O -0.385 6.385 8 O -0.319 6.319 9 C 0.119 3.881 10 N -0.287 5.287 11 C 0.301 3.699 12 O -0.371 6.371 13 C 0.286 3.714 14 O -0.394 6.394 15 N -0.342 5.342 16 C -0.011 4.011 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.197 0.803 31 H 0.273 0.727 32 H 0.269 0.731 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.258 25.509 -16.779 36.098 hybrid contribution -0.844 -2.127 -0.467 2.336 sum 18.413 23.381 -17.246 34.397 Atomic orbital electron populations 1.20526 0.88385 1.02780 1.03421 1.18671 0.98726 0.90469 1.04435 1.25163 0.99724 1.03547 1.07587 1.83197 1.01560 0.94425 1.65397 1.22630 0.95233 0.99361 1.24541 1.17900 0.81838 0.87075 0.73621 1.91051 1.82721 1.19204 1.45530 1.85006 1.17542 1.43294 1.86053 1.16636 0.88361 0.86040 0.97041 1.42565 1.50024 1.13720 1.22408 1.20478 0.78595 0.88950 0.81869 1.90790 1.55367 1.54643 1.36301 1.19665 0.80629 0.87309 0.83842 1.90789 1.56887 1.54515 1.37163 1.45985 1.50127 1.15386 1.22664 1.21876 0.98524 0.79864 1.00787 1.21743 0.98503 1.00929 0.94117 1.19505 0.96165 0.91081 0.98093 1.21087 1.31391 0.98634 1.04941 0.90936 1.25035 0.94640 0.98676 0.95153 1.69911 1.34488 1.24643 1.25062 0.86771 0.77732 0.82402 0.82360 1.20244 1.21371 1.18892 0.89903 0.91048 0.91778 0.80341 0.72668 0.73124 0.75129 0.90967 0.91009 0.91802 0.91762 0.96216 0.96652 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 8.75 36.00 0.32 -0.42 16 2 C -0.11 -0.95 5.45 -106.29 -0.58 -1.53 16 3 C -0.22 -1.37 10.65 29.09 0.31 -1.06 16 4 S 0.28 1.75 22.82 -107.50 -2.45 -0.71 16 5 C -0.30 -2.86 6.28 -38.57 -0.24 -3.10 16 6 C 0.55 5.60 8.07 31.97 0.26 5.86 16 7 O -0.50 -6.57 16.39 -19.42 -0.32 -6.89 16 8 O -0.51 -3.45 13.31 -41.24 -0.55 -4.00 16 9 C 0.23 2.41 5.65 -84.72 -0.48 1.94 16 10 N -0.64 -7.41 3.68 -10.90 -0.04 -7.45 16 11 C 0.52 6.96 6.98 -11.63 -0.08 6.87 16 12 O -0.50 -7.17 14.93 5.48 0.08 -7.08 16 13 C 0.51 7.52 7.89 -11.64 -0.09 7.42 16 14 O -0.52 -8.76 16.48 5.48 0.09 -8.67 16 15 N -0.69 -9.95 5.55 -60.77 -0.34 -10.29 16 16 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 17 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 19 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 20 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 23 Si 0.88 21.63 27.47 -169.99 -4.67 16.97 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 7.22 -51.93 -0.37 0.19 16 30 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 31 H 0.42 1.16 8.98 45.56 0.41 1.57 16 32 H 0.43 4.76 8.16 -40.82 -0.33 4.43 16 33 H 0.41 5.39 7.94 -40.82 -0.32 5.07 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -35.48 365.23 -7.14 -42.62 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.92 Total: 4.99 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.30 Total: 1.97 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.40 Total: -44.68 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.70 Total: -26.65 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.45 Total: -0.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.48 -7.14 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607923465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.980 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds