Wall clock time and date at job start Sat Apr 11 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32588 * 123.41417 * 2 1 4 4 S 1.75457 * 110.83167 * 180.24954 * 3 2 1 5 5 C 1.70445 * 92.54378 * 359.73622 * 4 3 2 6 6 N 1.38356 * 124.66610 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99799 * 0.02562 * 6 5 4 8 8 O 1.21386 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.49296 * 119.99949 * 180.02562 * 7 6 5 10 10 O 1.21371 * 119.99897 * 355.39808 * 9 7 6 11 11 N 1.34775 * 120.00323 * 175.40234 * 9 7 6 12 12 C 1.46503 * 119.99534 * 1.04132 * 11 9 7 13 13 C 1.46499 * 120.00456 * 181.03788 * 11 9 7 14 14 H 1.09001 * 109.46965 * 0.02562 * 13 11 9 15 15 C 1.52995 * 109.47631 * 240.00079 * 13 11 9 16 16 C 1.50704 * 109.47031 * 119.99870 * 13 11 9 17 17 H 1.07998 * 119.99999 * 5.59886 * 16 13 11 18 18 C 1.37868 * 120.00024 * 185.59823 * 16 13 11 19 19 N 1.31517 * 120.00163 * 9.34614 * 18 16 13 20 20 Si 1.86800 * 120.00122 * 189.34172 * 18 16 13 21 21 H 1.48503 * 109.47004 * 94.99227 * 20 18 16 22 22 H 1.48504 * 109.47045 * 214.98858 * 20 18 16 23 23 H 1.48501 * 109.47157 * 334.99327 * 20 18 16 24 24 C 1.37270 * 110.66978 * 359.97438 * 5 4 3 25 25 C 1.46478 * 123.60879 * 179.97438 * 24 5 4 26 26 O 1.21632 * 120.00306 * 90.02539 * 25 24 5 27 27 O 1.34877 * 119.99961 * 270.02571 * 25 24 5 28 28 H 1.09006 * 109.47009 * 270.21349 * 1 2 3 29 29 H 1.08992 * 109.46993 * 30.21223 * 1 2 3 30 30 H 1.09001 * 109.46876 * 150.21972 * 1 2 3 31 31 H 1.07996 * 124.58135 * 359.95234 * 3 2 1 32 32 H 0.97001 * 119.99717 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47213 * 83.71705 * 12 11 9 34 34 H 1.09002 * 109.46882 * 203.71007 * 12 11 9 35 35 H 1.08997 * 109.47260 * 323.71143 * 12 11 9 36 36 H 1.08999 * 109.47078 * 303.19356 * 15 13 11 37 37 H 1.09008 * 109.46723 * 63.18919 * 15 13 11 38 38 H 1.08993 * 109.47250 * 183.19024 * 15 13 11 39 39 H 0.97003 * 120.00682 * 180.02562 * 19 18 16 40 40 H 0.96703 * 116.99949 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2372 1.1067 0.0000 4 16 3.9496 0.7245 -0.0071 5 6 3.6525 -0.9538 -0.0022 6 7 4.6359 -1.9271 -0.0053 7 6 5.9358 -1.5715 -0.0121 8 8 6.2439 -0.3974 -0.0160 9 6 6.9970 -2.6217 -0.0159 10 8 6.6917 -3.7932 0.0714 11 7 8.2939 -2.2690 -0.1163 12 6 8.6638 -0.8539 -0.1986 13 6 9.3337 -3.3007 -0.1429 14 1 8.8708 -4.2850 -0.0725 15 6 10.2840 -3.0977 1.0387 16 6 10.1072 -3.2010 -1.4325 17 1 9.9109 -2.3904 -2.1186 18 6 11.0653 -4.1446 -1.7363 19 7 11.1791 -5.2275 -0.9986 20 14 12.2020 -3.8852 -3.1958 21 1 13.4687 -3.2639 -2.7324 22 1 12.4966 -5.1941 -3.8325 23 1 11.5444 -2.9914 -4.1827 24 6 2.3034 -1.2071 0.0051 25 6 1.7316 -2.5556 0.0102 26 8 1.4992 -3.1138 1.0656 27 8 1.4628 -3.1786 -1.1555 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8880 -0.5171 30 1 -0.3633 -0.8920 -0.5104 31 1 1.8325 2.1080 -0.0007 32 1 4.3896 -2.8653 -0.0018 33 1 8.7144 -0.4326 0.8054 34 1 9.6365 -0.7601 -0.6814 35 1 7.9157 -0.3161 -0.7810 36 1 10.7037 -2.0925 0.9990 37 1 9.7357 -3.2260 1.9721 38 1 11.0896 -3.8301 0.9871 39 1 11.8535 -5.8912 -1.2121 40 1 1.6642 -2.6949 -1.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607930495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:49 Heat of formation + Delta-G solvation = -111.764614 kcal Electronic energy + Delta-G solvation = -27197.941696 eV Core-core repulsion = 23105.386548 eV Total energy + Delta-G solvation = -4092.555149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16823 -40.25964 -38.57558 -37.67352 -36.56409 -36.14897 -35.05286 -32.87471 -30.60622 -29.77343 -28.12503 -26.58966 -25.76432 -25.30980 -23.88166 -22.11670 -21.61828 -20.24611 -19.59013 -18.54078 -17.94296 -16.85457 -16.68627 -16.59577 -16.24146 -16.05455 -15.74039 -15.37182 -14.85888 -14.56877 -14.43558 -14.25071 -13.89296 -13.70847 -13.43994 -12.80283 -12.74335 -12.63237 -12.57128 -12.31451 -12.23956 -11.85563 -11.69139 -11.31005 -11.13694 -11.09640 -10.99236 -10.85959 -10.75842 -10.47636 -10.43759 -10.28461 -9.39851 -9.10659 -8.62134 -8.54784 -8.44984 -7.93785 -6.22606 -4.28895 0.45118 1.00583 1.51324 1.63136 1.99185 2.01048 2.27316 3.19574 3.21320 3.27364 3.29196 3.38478 3.70472 4.28059 4.30364 4.48859 4.54338 4.75482 5.09331 5.10448 5.18950 5.27898 5.42866 5.57904 5.87584 5.95339 6.02924 6.03885 6.39987 6.46026 6.53734 6.58938 6.78342 6.98281 6.99389 7.21812 7.38009 7.41772 7.49908 7.73683 7.92344 8.16476 8.37304 8.74938 9.36524 10.84963 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002861 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.466119 B = 9784.702558 C =10353.546729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.044 4.044 3 C -0.290 4.290 4 S 0.311 5.689 5 C 0.060 3.940 6 N -0.613 5.613 7 C 0.503 3.497 8 O -0.478 6.478 9 C 0.498 3.502 10 O -0.526 6.526 11 N -0.545 5.545 12 C 0.068 3.932 13 C 0.252 3.748 14 H 0.075 0.925 15 C -0.141 4.141 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.070 3.930 19 N -0.882 5.882 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.270 4.270 25 C 0.566 3.434 26 O -0.453 6.453 27 O -0.504 6.504 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.169 0.831 32 H 0.430 0.570 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.018 0.982 38 H 0.081 0.919 39 H 0.266 0.734 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 14.006 -0.341 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.054 4.054 3 C -0.426 4.426 4 S 0.575 5.425 5 C -0.158 4.158 6 N -0.258 5.258 7 C 0.287 3.713 8 O -0.353 6.353 9 C 0.277 3.723 10 O -0.404 6.404 11 N -0.275 5.275 12 C -0.074 4.074 13 C 0.153 3.847 14 H 0.092 0.908 15 C -0.200 4.200 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.289 4.289 25 C 0.403 3.597 26 O -0.337 6.337 27 O -0.314 6.314 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.187 0.813 32 H 0.270 0.730 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -15.410 14.157 0.598 20.934 hybrid contribution -0.571 -0.876 -1.181 1.578 sum -15.981 13.281 -0.583 20.787 Atomic orbital electron populations 1.20543 0.89245 1.02896 1.03012 1.19260 0.96350 0.89134 1.00693 1.25794 1.00031 1.02495 1.14244 1.84261 1.00229 0.89864 1.68185 1.22007 0.90495 0.98635 1.04659 1.42676 1.03967 1.10202 1.68978 1.21462 0.83301 0.90501 0.76032 1.90606 1.79834 1.19127 1.45687 1.19192 0.83875 0.87566 0.81647 1.90786 1.81268 1.17808 1.50567 1.48306 1.04748 1.09776 1.64679 1.22173 1.02959 0.80585 1.01724 1.19255 0.83401 0.87068 0.94936 0.90766 1.22029 1.00840 1.01085 0.96045 1.21221 1.20335 1.11781 1.04053 0.91832 1.24896 0.97381 0.94271 0.96893 1.69965 1.33792 1.08359 1.39727 0.86473 0.80966 0.77767 0.82193 1.20437 1.21057 1.19773 1.20014 0.90882 0.95166 1.22887 1.19510 0.74253 0.83039 0.82898 1.90932 1.47726 1.67389 1.27616 1.84586 1.79338 1.49958 1.17493 0.90559 0.90675 0.91674 0.81338 0.72986 0.93063 0.90013 0.89696 0.94479 0.96245 0.90064 0.92431 0.72428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 9.96 36.01 0.36 -0.33 16 2 C -0.04 -0.41 6.00 -104.01 -0.62 -1.03 16 3 C -0.29 -2.46 10.88 28.83 0.31 -2.14 16 4 S 0.31 3.26 19.95 -107.50 -2.14 1.11 16 5 C 0.06 0.74 6.98 -14.96 -0.10 0.64 16 6 N -0.61 -8.54 5.35 -12.08 -0.06 -8.61 16 7 C 0.50 8.01 7.72 -11.66 -0.09 7.92 16 8 O -0.48 -7.31 10.58 5.47 0.06 -7.25 16 9 C 0.50 9.83 7.74 -11.66 -0.09 9.74 16 10 O -0.53 -11.82 15.81 5.48 0.09 -11.74 16 11 N -0.54 -11.21 2.75 -175.83 -0.48 -11.69 16 12 C 0.07 1.16 8.30 59.85 0.50 1.66 16 13 C 0.25 6.12 2.49 -69.08 -0.17 5.94 16 14 H 0.07 2.08 6.84 -51.93 -0.36 1.72 16 15 C -0.14 -3.17 9.12 37.15 0.34 -2.83 16 16 C -0.54 -13.78 7.97 -34.44 -0.27 -14.05 16 17 H 0.06 1.60 7.26 -52.49 -0.38 1.22 16 18 C 0.07 1.82 5.18 -17.82 -0.09 1.73 16 19 N -0.88 -24.24 12.16 55.43 0.67 -23.56 16 20 Si 0.90 20.19 29.55 -169.99 -5.02 15.16 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 C -0.27 -3.06 5.67 -104.42 -0.59 -3.65 16 25 C 0.57 7.16 6.67 34.05 0.23 7.39 16 26 O -0.45 -7.57 17.96 -19.37 -0.35 -7.92 16 27 O -0.50 -5.00 13.49 -40.98 -0.55 -5.56 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.43 6.01 7.63 -40.82 -0.31 5.70 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.42 7.03 -51.93 -0.36 1.06 16 35 H 0.08 1.34 5.51 -51.93 -0.29 1.06 16 36 H 0.04 0.75 7.57 -51.93 -0.39 0.36 16 37 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.08 1.98 6.84 -51.93 -0.36 1.63 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.42 1.86 8.96 45.56 0.41 2.27 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -32.07 357.87 -6.40 -38.46 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.69 Total: 5.21 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.31 Total: 10.98 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.13 Total: -43.86 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.76 Total: -32.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.14 Total: 1.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.07 -6.40 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607930495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.302 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds