Wall clock time and date at job start Sat Apr 11 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47019 * 2 1 4 4 N 1.46499 * 109.46912 * 120.00321 * 2 1 3 5 5 C 1.46504 * 120.00114 * 124.45076 * 4 2 1 6 6 C 1.50701 * 109.47238 * 263.81052 * 5 4 2 7 7 H 1.07999 * 119.99800 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99777 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99830 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00278 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47217 * 90.00074 * 10 8 6 12 12 H 1.48499 * 109.47266 * 209.99885 * 10 8 6 13 13 H 1.48499 * 109.47035 * 329.99750 * 10 8 6 14 14 C 1.34776 * 119.99967 * 304.44718 * 4 2 1 15 15 O 1.21358 * 119.99938 * 354.56645 * 14 4 2 16 16 C 1.49344 * 120.00162 * 174.56569 * 14 4 2 17 17 O 1.21381 * 119.99636 * 0.20936 * 16 14 4 18 18 N 1.34770 * 120.00175 * 180.20859 * 16 14 4 19 19 C 1.39290 * 120.00008 * 184.60989 * 18 16 14 20 20 C 1.38171 * 123.52528 * 353.20011 * 19 18 16 21 21 C 1.33549 * 115.09637 * 180.29459 * 20 19 18 22 22 S 1.70559 * 111.22698 * 359.72549 * 21 20 19 23 23 C 1.37608 * 123.52030 * 172.98108 * 19 18 16 24 24 C 1.41513 * 125.49015 * 0.02562 * 23 19 18 25 25 O 1.21698 * 120.00019 * 359.71748 * 24 23 19 26 26 O 1.34973 * 120.00073 * 179.71800 * 24 23 19 27 27 H 1.08996 * 109.46546 * 305.69406 * 1 2 3 28 28 H 1.08994 * 109.46704 * 65.69186 * 1 2 3 29 29 H 1.08998 * 109.46975 * 185.69315 * 1 2 3 30 30 H 1.08996 * 109.46820 * 239.99826 * 2 1 3 31 31 H 1.09010 * 109.46866 * 184.67114 * 3 2 1 32 32 H 1.08990 * 109.47384 * 304.66940 * 3 2 1 33 33 H 1.09003 * 109.47114 * 64.67708 * 3 2 1 34 34 H 1.08998 * 109.47054 * 23.81550 * 5 4 2 35 35 H 1.09007 * 109.46641 * 143.80858 * 5 4 2 36 36 H 0.96993 * 119.99900 * 180.02562 * 9 8 6 37 37 H 0.97007 * 120.00270 * 4.61201 * 18 16 14 38 38 H 1.08010 * 122.44918 * 0.02562 * 20 19 18 39 39 H 1.07998 * 124.39060 * 179.74661 * 21 20 19 40 40 H 0.96694 * 113.99743 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9392 -1.8224 1.0639 6 6 2.1601 -3.1117 1.1076 7 1 1.0864 -3.0902 1.2220 8 6 2.8180 -4.3186 1.0005 9 7 2.1380 -5.4438 1.0382 10 14 4.6750 -4.3558 0.8020 11 1 5.3151 -4.4085 2.1410 12 1 5.0653 -5.5559 0.0193 13 1 5.1211 -3.1325 0.0879 14 6 1.6205 -0.2849 2.4182 15 8 0.9377 0.7117 2.5342 16 6 2.0198 -1.0616 3.6297 17 8 2.7058 -2.0562 3.5140 18 7 1.6184 -0.6582 4.8513 19 6 2.0689 -1.3254 5.9880 20 6 2.8158 -2.4871 5.9452 21 6 3.1528 -2.9880 7.1364 22 16 2.5541 -2.0188 8.4057 23 6 1.8203 -0.8942 7.2709 24 6 1.0867 0.2643 7.6206 25 8 0.6197 0.9747 6.7498 26 8 0.9047 0.5812 8.9199 27 1 -0.3632 0.5996 0.8346 28 1 -0.3632 0.4230 -0.9365 29 1 -0.3633 -1.0226 0.1019 30 1 1.8933 -0.5138 -0.8899 31 1 3.1269 1.4436 -0.0837 32 1 1.6101 1.9799 -0.8451 33 1 1.7467 1.9315 0.9289 34 1 3.4695 -1.7503 0.1144 35 1 3.6576 -1.8040 1.8836 36 1 2.6009 -6.2928 0.9632 37 1 1.0157 0.0969 4.9391 38 1 3.1021 -2.9581 5.0163 39 1 3.7301 -3.8898 7.2778 40 1 0.3913 1.3886 9.0595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609704646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:57 Heat of formation + Delta-G solvation = -119.942358 kcal Electronic energy + Delta-G solvation = -28164.345593 eV Core-core repulsion = 24071.435831 eV Total energy + Delta-G solvation = -4092.909762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45745 -41.38090 -40.38341 -38.56429 -37.48622 -37.04282 -35.13658 -34.88539 -33.30203 -31.27870 -29.62577 -28.07638 -27.42871 -25.44160 -24.19015 -23.76878 -23.00764 -20.79798 -20.59141 -19.70205 -19.08845 -18.76065 -18.65979 -17.38625 -17.22110 -17.13708 -16.75773 -16.40576 -16.24166 -16.09672 -15.66726 -15.36343 -15.01520 -14.79779 -14.46572 -14.41377 -14.33076 -14.06350 -13.90954 -13.52724 -13.35878 -12.86610 -12.69267 -12.66363 -12.62032 -12.57575 -12.24795 -12.08962 -11.96254 -11.87884 -11.81999 -11.67460 -11.41218 -10.72296 -10.19975 -9.99437 -9.64067 -9.00502 -8.22825 -6.24595 -0.91121 0.32247 0.38533 0.75292 1.15618 1.34651 1.41221 1.42581 1.49460 1.78184 2.22041 2.22694 2.39185 2.44706 3.13944 3.19558 3.80067 3.95307 3.98628 4.17932 4.29539 4.47901 4.52312 4.56193 4.71660 4.77764 4.88998 4.89691 4.93926 4.96807 5.06458 5.19773 5.36750 5.38344 5.42695 5.50350 5.64102 5.99925 6.09952 6.37214 6.60225 6.71901 6.82699 6.94221 7.36640 8.94193 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.004667 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.897607 B = 5997.767903 C = 8046.702439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.156 4.156 4 N -0.555 5.555 5 C 0.207 3.793 6 C -0.505 4.505 7 H 0.024 0.976 8 C 0.023 3.977 9 N -0.947 5.947 10 Si 0.938 3.062 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.240 1.240 14 C 0.509 3.491 15 O -0.542 6.542 16 C 0.488 3.512 17 O -0.456 6.456 18 N -0.625 5.625 19 C 0.232 3.768 20 C -0.215 4.215 21 C -0.183 4.183 22 S 0.340 5.660 23 C -0.373 4.373 24 C 0.566 3.434 25 O -0.553 6.553 26 O -0.492 6.492 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.432 0.568 38 H 0.162 0.838 39 H 0.207 0.793 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 10.687 13.108 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.214 4.214 4 N -0.285 5.285 5 C 0.086 3.914 6 C -0.544 4.544 7 H 0.043 0.957 8 C -0.174 4.174 9 N -0.588 5.588 10 Si 0.761 3.239 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.163 1.163 14 C 0.291 3.709 15 O -0.422 6.422 16 C 0.270 3.730 17 O -0.327 6.327 18 N -0.274 5.274 19 C 0.117 3.883 20 C -0.247 4.247 21 C -0.322 4.322 22 S 0.606 5.394 23 C -0.494 4.494 24 C 0.415 3.585 25 O -0.447 6.447 26 O -0.304 6.304 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.275 0.725 38 H 0.179 0.821 39 H 0.224 0.776 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 3.394 10.092 14.266 17.801 hybrid contribution -0.340 0.078 -1.761 1.796 sum 3.054 10.170 12.504 16.405 Atomic orbital electron populations 1.22107 0.94684 1.01211 1.03732 1.21442 0.95138 0.94086 0.86315 1.22123 1.01304 0.94335 1.03632 1.48082 1.44266 1.31491 1.04674 1.20104 0.89458 0.83173 0.98683 1.21171 0.93452 0.90506 1.49274 0.95726 1.25575 1.02963 0.94713 0.94185 1.70051 1.37986 0.98270 1.52512 0.85870 0.80246 0.78787 0.78964 1.19630 1.21159 1.16341 1.19614 0.81768 0.84818 0.84715 1.90640 1.39381 1.25816 1.86346 1.20762 0.81678 0.85535 0.85002 1.90741 1.34190 1.22859 1.84876 1.43266 1.46966 1.34043 1.03158 1.17510 0.93730 0.91998 0.85061 1.20705 1.04528 0.96966 1.02452 1.25869 1.03460 1.05971 0.96909 1.82575 1.43172 1.10597 1.03018 1.22147 1.22542 1.07753 0.96921 1.17836 0.76375 0.82893 0.81438 1.90867 1.50498 1.52612 1.50765 1.84966 1.71164 1.49428 1.24890 0.91990 0.88804 0.94837 0.88078 0.92152 0.88954 0.92425 0.93346 0.92708 0.92659 0.72478 0.82055 0.77624 0.70679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 8.95 71.98 0.64 -4.66 16 2 C 0.13 4.45 3.27 44.99 0.15 4.60 16 3 C -0.16 -4.33 9.24 71.98 0.66 -3.66 16 4 N -0.55 -22.82 2.42 -803.82 -1.95 -24.77 16 5 C 0.21 9.44 3.81 85.63 0.33 9.76 16 6 C -0.51 -28.01 8.35 25.60 0.21 -27.80 16 7 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 8 C 0.02 1.32 5.47 84.65 0.46 1.78 16 9 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 10 Si 0.94 42.60 27.47 68.60 1.88 44.49 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 14 C 0.51 21.45 7.08 87.24 0.62 22.06 16 15 O -0.54 -22.55 12.76 -3.27 -0.04 -22.60 16 16 C 0.49 20.73 7.68 87.24 0.67 21.40 16 17 O -0.46 -21.13 8.90 -3.34 -0.03 -21.16 16 18 N -0.63 -23.65 5.31 -306.75 -1.63 -25.28 16 19 C 0.23 7.83 6.63 37.79 0.25 8.08 16 20 C -0.21 -7.00 9.09 21.19 0.19 -6.81 16 21 C -0.18 -4.16 10.89 66.76 0.73 -3.43 16 22 S 0.34 6.36 22.82 -56.49 -1.29 5.08 16 23 C -0.37 -10.22 6.29 22.93 0.14 -10.08 16 24 C 0.57 14.75 8.08 68.63 0.55 15.31 16 25 O -0.55 -17.67 15.22 19.19 0.29 -17.38 16 26 O -0.49 -8.34 13.30 -58.90 -0.78 -9.12 16 27 H 0.06 2.21 6.23 -2.39 -0.01 2.19 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.10 3.22 7.75 -2.39 -0.02 3.20 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.82 6.22 -2.39 -0.01 1.81 16 34 H 0.05 2.06 6.89 -2.39 -0.02 2.04 16 35 H 0.06 2.55 5.26 -2.38 -0.01 2.53 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.43 16.28 5.74 -92.70 -0.53 15.75 16 38 H 0.16 6.43 5.22 -3.80 -0.02 6.41 16 39 H 0.21 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.43 3.38 8.98 -74.06 -0.67 2.72 16 Total: -1.00 -73.88 347.01 2.24 -71.64 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.13 Total: 30.40 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 5.62 Total: 26.56 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.28 Total: -107.90 kcal Atomic # 8 Polarization: -69.69 SS G_CDS: -0.56 Total: -70.26 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.29 Total: 5.08 kcal Total: -73.88 2.24 -71.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609704646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.304 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds