Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42098 * 110.54362 * 2 1 4 4 O 1.42100 * 110.54460 * 223.25326 * 2 1 3 5 5 C 1.76197 * 104.44741 * 111.62612 * 2 1 3 6 6 C 1.38613 * 119.82293 * 90.00243 * 5 2 1 7 7 C 1.37955 * 120.42472 * 179.97438 * 6 5 2 8 8 C 1.38963 * 120.05864 * 0.02562 * 7 6 5 9 9 N 1.38877 * 120.17211 * 179.97438 * 8 7 6 10 10 C 1.40338 * 119.65388 * 359.97438 * 8 7 6 11 11 C 1.47434 * 120.21095 * 180.02562 * 10 8 7 12 12 O 1.21609 * 119.99739 * 334.12518 * 11 10 8 13 13 N 1.34772 * 120.00482 * 154.12075 * 11 10 8 14 14 C 1.47583 * 134.49570 * 174.34711 * 13 11 10 15 15 C 1.53948 * 86.11478 * 155.36475 * 14 13 11 16 16 O 1.42902 * 113.73845 * 269.15411 * 15 14 13 17 17 C 1.50702 * 113.73927 * 137.95712 * 15 14 13 18 18 H 1.07993 * 120.00108 * 1.92113 * 17 15 14 19 19 C 1.37876 * 119.99818 * 181.92114 * 17 15 14 20 20 N 1.31514 * 119.99823 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00089 * 0.02562 * 19 17 15 22 22 H 1.48496 * 109.47195 * 269.99814 * 21 19 17 23 23 H 1.48498 * 109.47132 * 29.99971 * 21 19 17 24 24 H 1.48500 * 109.47152 * 149.99632 * 21 19 17 25 25 C 1.47817 * 134.45217 * 354.22520 * 13 11 10 26 26 C 1.37755 * 119.82610 * 270.25345 * 5 2 1 27 27 H 1.09000 * 109.47090 * 308.37926 * 1 2 3 28 28 H 1.08999 * 109.46971 * 68.37192 * 1 2 3 29 29 H 1.08997 * 109.47481 * 188.37312 * 1 2 3 30 30 H 1.07997 * 119.78858 * 359.95096 * 6 5 2 31 31 H 1.07994 * 119.96969 * 179.97438 * 7 6 5 32 32 H 0.96990 * 119.99990 * 184.69217 * 9 8 7 33 33 H 0.97004 * 119.99758 * 4.69082 * 9 8 7 34 34 H 1.09002 * 113.76541 * 41.06592 * 14 13 11 35 35 H 1.08995 * 113.76693 * 269.66894 * 14 13 11 36 36 H 0.96698 * 113.99648 * 178.07984 * 16 15 14 37 37 H 0.97004 * 119.99990 * 180.02562 * 20 19 17 38 38 H 1.08996 * 113.77025 * 90.37666 * 25 13 11 39 39 H 1.09001 * 113.83473 * 318.90493 * 25 13 11 40 40 H 1.07999 * 120.03464 * 0.04300 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2536 -0.6288 1.5861 6 6 2.4257 -1.9928 1.7635 7 6 2.7703 -2.4985 2.9998 8 6 2.9471 -1.6402 4.0783 9 7 3.2936 -2.1468 5.3241 10 6 2.7736 -0.2588 3.9020 11 6 2.9586 0.6630 5.0377 12 8 2.7946 0.2666 6.1755 13 7 3.3096 1.9451 4.8148 14 6 3.4731 3.1364 5.6704 15 6 4.4340 3.6548 4.5851 16 8 5.7980 3.2877 4.8015 17 6 4.2621 5.1188 4.2716 18 1 3.5374 5.7061 4.8157 19 6 5.0303 5.7084 3.2901 20 7 4.8799 6.9858 3.0162 21 14 6.2834 4.6923 2.3484 22 1 7.5900 4.7412 3.0525 23 1 5.8179 3.2846 2.2658 24 1 6.4386 5.2435 0.9783 25 6 3.6874 2.7213 3.6149 26 6 2.4194 0.2371 2.6446 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3634 -1.0167 0.1496 30 1 2.2886 -2.6639 0.9285 31 1 2.9021 -3.5625 3.1298 32 1 3.3498 -1.5544 6.0900 33 1 3.4793 -3.0932 5.4282 34 1 3.9583 2.9290 6.6242 35 1 2.5653 3.7308 5.7739 36 1 6.4006 3.5864 4.1067 37 1 5.4201 7.4006 2.3254 38 1 2.8428 3.1937 3.1134 39 1 4.3434 2.1832 2.9307 40 1 2.2795 1.2984 2.5018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616732625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -95.939971 kcal Electronic energy + Delta-G solvation = -28174.108291 eV Core-core repulsion = 24082.239351 eV Total energy + Delta-G solvation = -4091.868941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82187 -40.42144 -38.88188 -38.06321 -36.90994 -36.44665 -35.63371 -34.56241 -32.73165 -30.72426 -30.29430 -29.82851 -27.50840 -27.19587 -24.80985 -23.65979 -22.15706 -20.90787 -19.77017 -19.40999 -18.81662 -18.34242 -18.15717 -17.96133 -17.66947 -17.06672 -16.71138 -16.54337 -16.47735 -15.62482 -15.45971 -15.12005 -15.01556 -14.95156 -14.43242 -14.35199 -14.24088 -13.99850 -13.89827 -13.87986 -13.71757 -13.07815 -13.04678 -13.03637 -12.77278 -12.67400 -12.48917 -12.23556 -11.98430 -11.93681 -11.68175 -11.42964 -11.12275 -10.91250 -10.52419 -10.23533 -9.75389 -8.96282 -8.44698 -6.55686 -0.76536 -0.17271 0.04192 1.20418 1.28622 1.36664 1.59079 1.75287 2.02124 2.15509 2.51118 2.74552 2.75652 3.10014 3.12415 3.24581 3.43285 3.63513 3.78032 4.05177 4.14149 4.16246 4.29699 4.32207 4.37137 4.46291 4.55454 4.63159 4.65857 4.78794 4.82950 4.88412 5.00516 5.03830 5.06666 5.26817 5.61026 6.02452 6.20549 6.51415 6.55400 6.64613 6.80045 6.96483 7.12618 8.70312 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.005041 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.615452 B = 5552.977678 C = 7329.509341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.502 3.498 3 O -0.985 6.985 4 O -0.970 6.970 5 C -0.732 4.732 6 C 0.044 3.956 7 C -0.219 4.219 8 C 0.309 3.691 9 N -0.839 5.839 10 C -0.260 4.260 11 C 0.580 3.420 12 O -0.586 6.586 13 N -0.628 5.628 14 C 0.130 3.870 15 C 0.184 3.816 16 O -0.561 6.561 17 C -0.540 4.540 18 H 0.065 0.935 19 C 0.037 3.963 20 N -0.918 5.918 21 Si 0.901 3.099 22 H -0.252 1.252 23 H -0.239 1.239 24 H -0.281 1.281 25 C 0.069 3.931 26 C 0.047 3.953 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.411 0.589 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.356 0.644 37 H 0.274 0.726 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -21.195 -5.553 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.686 3.314 3 O -0.982 6.982 4 O -0.967 6.967 5 C -0.820 4.820 6 C 0.024 3.976 7 C -0.242 4.242 8 C 0.193 3.807 9 N -0.379 5.379 10 C -0.269 4.269 11 C 0.374 3.626 12 O -0.470 6.470 13 N -0.360 5.360 14 C 0.008 3.992 15 C 0.143 3.857 16 O -0.372 6.372 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.165 4.165 20 N -0.555 5.555 21 Si 0.726 3.274 22 H -0.178 1.178 23 H -0.163 1.163 24 H -0.207 1.207 25 C -0.054 4.054 26 C 0.026 3.974 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.192 0.808 31 H 0.190 0.810 32 H 0.247 0.753 33 H 0.247 0.753 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.208 0.792 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.009 -21.421 -5.066 23.784 hybrid contribution 0.698 0.342 0.295 0.832 sum -8.311 -21.079 -4.770 23.155 Atomic orbital electron populations 1.30056 1.19711 1.14503 1.13725 1.04866 0.80095 0.73115 0.73332 1.93572 1.79764 1.38476 1.86430 1.93517 1.79607 1.62016 1.61609 1.30207 1.27043 1.03425 1.21369 1.21158 0.86364 0.92504 0.97578 1.21068 1.10932 1.00738 0.91449 1.18177 0.84734 0.90344 0.87462 1.43258 1.72611 1.13733 1.08302 1.19360 1.19893 0.92752 0.94856 1.18102 0.75377 0.80647 0.88495 1.90497 1.55955 1.76097 1.24496 1.50005 1.65632 1.07330 1.12987 1.23306 0.98131 0.82214 0.95561 1.20631 0.79944 0.91915 0.93178 1.86440 1.18779 1.80907 1.51098 1.21315 1.23044 0.92998 1.20445 0.91722 1.25657 0.98195 0.95678 0.96962 1.69961 1.41070 1.12055 1.32413 0.86594 0.80820 0.80824 0.79134 1.17795 1.16302 1.20750 1.24656 0.99587 0.90890 0.90225 1.21043 0.86760 0.99679 0.89873 0.83660 0.82919 0.82029 0.80808 0.80996 0.75272 0.75313 0.90518 0.87176 0.79165 0.91672 0.87320 0.90638 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -5.38 10.80 113.37 1.22 -4.16 16 2 S 2.50 50.72 5.79 -56.49 -0.33 50.39 16 3 O -0.99 -30.01 17.11 -127.65 -2.18 -32.20 16 4 O -0.97 -23.56 17.11 -127.65 -2.18 -25.74 16 5 C -0.73 -16.54 5.65 22.24 0.13 -16.42 16 6 C 0.04 0.79 9.45 22.29 0.21 1.00 16 7 C -0.22 -3.91 9.88 22.38 0.22 -3.68 16 8 C 0.31 7.70 6.74 38.71 0.26 7.96 16 9 N -0.84 -18.27 8.91 -50.94 -0.45 -18.73 16 10 C -0.26 -8.16 5.82 -19.98 -0.12 -8.27 16 11 C 0.58 21.92 7.71 86.67 0.67 22.59 16 12 O -0.59 -23.47 14.88 -4.06 -0.06 -23.53 16 13 N -0.63 -24.95 3.57 -843.50 -3.02 -27.96 16 14 C 0.13 5.33 8.23 86.49 0.71 6.04 16 15 C 0.18 8.45 1.06 -10.88 -0.01 8.44 16 16 O -0.56 -26.41 13.35 -148.98 -1.99 -28.40 16 17 C -0.54 -28.51 9.19 25.60 0.24 -28.27 16 18 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 19 C 0.04 2.00 5.47 84.65 0.46 2.46 16 20 N -0.92 -53.01 13.96 21.45 0.30 -52.71 16 21 Si 0.90 40.17 24.31 68.60 1.67 41.84 16 22 H -0.25 -10.59 7.05 99.48 0.70 -9.89 16 23 H -0.24 -10.03 5.16 99.48 0.51 -9.52 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.07 2.84 4.82 86.44 0.42 3.26 16 26 C 0.05 1.35 8.25 22.52 0.19 1.53 16 27 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.17 1.97 7.55 -2.91 -0.02 1.95 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.41 11.10 5.76 -92.72 -0.53 10.57 16 33 H 0.42 5.61 8.84 -92.71 -0.82 4.79 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.11 4.17 8.09 -2.39 -0.02 4.16 16 36 H 0.36 15.93 3.57 -74.06 -0.26 15.67 16 37 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 38 H 0.11 4.24 7.69 -2.39 -0.02 4.23 16 39 H 0.08 3.09 6.62 -2.39 -0.02 3.08 16 40 H 0.14 4.12 5.17 -2.91 -0.02 4.10 16 Total: -1.00 -78.22 341.66 -4.33 -82.55 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.68 Total: 42.02 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.59 Total: -7.54 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.17 Total: -99.40 kcal Atomic # 8 Polarization: -103.45 SS G_CDS: -6.42 Total: -109.87 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.67 Total: 41.84 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.33 Total: 50.39 kcal Total: -78.22 -4.33 -82.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616732625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.385 kcal (2) G-P(sol) polarization free energy of solvation -78.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds