Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35966 * 117.00011 * 2 1 4 4 C 1.38320 * 119.99090 * 0.02562 * 3 2 1 5 5 C 1.39603 * 119.81919 * 180.02562 * 4 3 2 6 6 C 1.47740 * 120.09974 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00479 * 120.83253 * 6 5 4 8 8 N 1.34773 * 119.99526 * 300.83094 * 6 5 4 9 9 C 1.47584 * 134.49171 * 176.41710 * 8 6 5 10 10 C 1.53951 * 86.11293 * 155.36200 * 9 8 6 11 11 O 1.42897 * 113.74199 * 269.15349 * 10 9 8 12 12 C 1.50707 * 113.73820 * 137.95834 * 10 9 8 13 13 H 1.08000 * 119.99569 * 1.92356 * 12 10 9 14 14 C 1.37877 * 119.99975 * 181.92488 * 12 10 9 15 15 N 1.31516 * 119.99763 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 119.99922 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47203 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46925 * 299.99620 * 16 14 12 19 19 H 1.48496 * 109.47513 * 59.99595 * 16 14 12 20 20 C 1.47817 * 134.45833 * 356.29349 * 8 6 5 21 21 C 1.39650 * 119.80726 * 0.26904 * 5 4 3 22 22 N 1.48021 * 120.00935 * 179.72923 * 21 5 4 23 23 O 1.21800 * 119.99775 * 177.55466 * 22 21 5 24 24 O 1.21788 * 120.00175 * 357.56031 * 22 21 5 25 25 C 1.37896 * 119.97687 * 359.44549 * 21 5 4 26 26 C 1.38525 * 120.18223 * 0.56060 * 25 21 5 27 27 F 1.35095 * 119.90183 * 179.69397 * 26 25 21 28 28 H 1.09002 * 109.46919 * 59.99496 * 1 2 3 29 29 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47404 * 299.99816 * 1 2 3 31 31 H 1.08002 * 120.09113 * 0.03669 * 4 3 2 32 32 H 1.08998 * 113.76502 * 41.06355 * 9 8 6 33 33 H 1.08993 * 113.77271 * 269.66604 * 9 8 6 34 34 H 0.96708 * 114.00193 * 178.07851 * 11 10 9 35 35 H 0.97005 * 119.99494 * 180.02562 * 15 14 12 36 36 H 1.09000 * 113.77208 * 90.37249 * 20 8 6 37 37 H 1.09003 * 113.83647 * 318.91210 * 20 8 6 38 38 H 1.07995 * 119.90607 * 180.27910 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2928 2.3714 0.0005 5 6 1.9303 3.6134 0.0000 6 6 1.1315 4.8562 0.0011 7 8 1.2578 5.6591 0.9050 8 7 0.2628 5.0997 -1.0001 9 6 -0.7163 6.1671 -1.2832 10 6 -0.5475 5.7848 -2.7648 11 8 0.4779 6.5202 -3.4355 12 6 -1.8432 5.7488 -3.5336 13 1 -2.7694 6.0099 -3.0433 14 6 -1.8463 5.3823 -4.8628 15 7 -0.7183 5.0648 -5.4599 16 14 -3.4522 5.3384 -5.8158 17 1 -3.1865 4.9155 -7.2143 18 1 -4.3815 4.3731 -5.1754 19 1 -4.0655 6.6908 -5.8150 20 6 -0.0897 4.4056 -2.2566 21 6 3.3253 3.6776 -0.0068 22 7 4.0058 4.9920 -0.0134 23 8 5.2219 5.0484 0.0257 24 8 3.3499 6.0172 -0.0579 25 6 4.0685 2.5161 -0.0013 26 6 3.4352 1.2840 -0.0009 27 9 4.1689 0.1497 -0.0018 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2141 2.3164 0.0016 32 1 -0.3567 7.1678 -1.0439 33 1 -1.7121 5.9659 -0.8882 34 1 0.6071 6.2625 -4.3587 35 1 -0.7204 4.8073 -6.3951 36 1 -0.9011 3.6858 -2.1483 37 1 0.7692 4.0026 -2.7932 38 1 5.1472 2.5671 -0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638886587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -108.039231 kcal Electronic energy + Delta-G solvation = -30398.888157 eV Core-core repulsion = 25740.281377 eV Total energy + Delta-G solvation = -4658.606780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.30569 -43.46278 -41.80900 -41.00895 -39.45650 -38.51867 -37.67570 -35.86708 -34.15489 -33.03794 -32.60393 -30.31250 -29.00096 -27.74118 -27.07872 -26.88320 -24.94884 -23.76084 -22.23393 -20.99478 -20.35992 -19.94430 -19.51235 -19.09693 -18.76951 -18.40078 -18.21606 -17.65524 -17.46303 -17.12226 -16.72139 -16.39033 -16.30420 -15.97665 -15.87339 -15.34302 -15.00670 -14.80641 -14.36913 -14.10934 -13.93649 -13.74388 -13.51289 -13.40883 -12.90664 -12.81905 -12.76539 -12.73225 -12.57648 -12.36711 -12.29633 -12.26276 -12.20847 -11.55456 -11.09870 -10.76896 -10.64830 -10.31830 -10.03374 -9.66309 -8.26096 -6.43624 -1.58028 -0.81225 -0.01597 0.12224 1.28104 1.48809 1.49951 1.54832 1.59600 1.63065 1.86237 2.41024 2.46307 2.83484 2.91382 2.98786 3.12991 3.53524 3.69486 3.75588 3.91809 4.08175 4.12534 4.21874 4.28314 4.31308 4.42512 4.60043 4.67512 4.69198 4.74193 4.85187 4.87134 5.06556 5.20058 5.67978 5.72685 5.92296 6.34614 6.62932 6.64408 6.88442 7.30163 7.43182 8.79788 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.004182 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.024508 B = 6693.644135 C = 7999.184179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.295 6.295 3 C 0.169 3.831 4 C -0.143 4.143 5 C -0.028 4.028 6 C 0.566 3.434 7 O -0.554 6.554 8 N -0.622 5.622 9 C 0.117 3.883 10 C 0.217 3.783 11 O -0.589 6.589 12 C -0.552 4.552 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.918 5.918 16 Si 0.967 3.033 17 H -0.287 1.287 18 H -0.262 1.262 19 H -0.277 1.277 20 C 0.093 3.907 21 C -0.046 4.046 22 N 0.028 4.972 23 O -0.132 6.132 24 O -0.198 6.198 25 C -0.040 4.040 26 C 0.090 3.910 27 F -0.107 7.107 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.188 0.812 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.386 0.614 35 H 0.275 0.725 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -15.199 8.008 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.207 6.207 3 C 0.119 3.881 4 C -0.162 4.162 5 C -0.032 4.032 6 C 0.354 3.646 7 O -0.434 6.434 8 N -0.355 5.355 9 C -0.005 4.005 10 C 0.176 3.824 11 O -0.400 6.400 12 C -0.590 4.590 13 H 0.096 0.904 14 C -0.166 4.166 15 N -0.558 5.558 16 Si 0.793 3.207 17 H -0.213 1.213 18 H -0.187 1.187 19 H -0.203 1.203 20 C -0.029 4.029 21 C -0.131 4.131 22 N 0.545 4.455 23 O -0.357 6.357 24 O -0.401 6.401 25 C -0.059 4.059 26 C 0.069 3.931 27 F -0.085 7.085 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.098 0.902 31 H 0.205 0.795 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.240 0.760 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.441 -15.410 9.033 17.921 hybrid contribution -0.314 0.407 -1.175 1.283 sum 1.127 -15.003 7.858 16.974 Atomic orbital electron populations 1.23805 0.74124 1.07605 1.03654 1.86244 1.25263 1.23202 1.85943 1.19083 0.90711 0.86335 0.91947 1.21367 1.02816 0.87508 1.04544 1.19698 0.91036 0.95718 0.96774 1.17691 0.80041 0.85236 0.81607 1.90790 1.67713 1.47239 1.37621 1.50110 1.36622 1.28002 1.20738 1.23579 0.91796 0.91057 0.94040 1.20152 0.86721 0.87067 0.88424 1.86105 1.58156 1.64680 1.31079 1.21676 0.93423 1.47433 0.96475 0.90423 1.25735 0.99917 0.92833 0.98129 1.69479 1.27584 1.45745 1.13025 0.85457 0.79393 0.78658 0.77222 1.21251 1.18679 1.20292 1.24290 0.98793 0.99958 0.79892 1.20658 0.91324 0.83335 1.17787 1.43625 1.00958 1.03316 0.97589 1.94418 0.96005 1.93945 1.51305 1.94783 1.65668 1.23870 1.55798 1.20771 1.03789 0.86884 0.94472 1.16410 0.85927 0.82339 1.08402 1.91609 1.76148 1.46868 1.93871 0.90612 0.84282 0.90181 0.79469 0.92331 0.86411 0.75994 0.91552 0.87147 0.92510 0.78232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.30 -4.77 10.36 -93.16 -0.96 -5.74 16 3 C 0.17 3.31 6.69 22.49 0.15 3.46 16 4 C -0.14 -3.20 8.54 22.62 0.19 -3.01 16 5 C -0.03 -0.88 5.41 -20.10 -0.11 -0.99 16 6 C 0.57 22.81 5.93 86.76 0.51 23.32 16 7 O -0.55 -26.18 15.69 18.89 0.30 -25.88 16 8 N -0.62 -24.86 3.61 -843.20 -3.05 -27.91 16 9 C 0.12 4.83 8.23 86.49 0.71 5.54 16 10 C 0.22 9.93 1.40 -10.88 -0.02 9.91 16 11 O -0.59 -30.70 13.48 -148.98 -2.01 -32.71 16 12 C -0.55 -25.67 8.61 25.60 0.22 -25.45 16 13 H 0.08 3.44 7.81 -2.91 -0.02 3.42 16 14 C 0.03 1.61 5.39 84.65 0.46 2.06 16 15 N -0.92 -44.47 11.20 21.45 0.24 -44.23 16 16 Si 0.97 37.09 29.54 68.60 2.03 39.11 16 17 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.09 3.60 7.79 86.44 0.67 4.27 16 21 C -0.05 -1.45 6.88 36.63 0.25 -1.20 16 22 N 0.03 1.10 4.45 -45.84 -0.20 0.89 16 23 O -0.13 -4.62 18.44 18.89 0.35 -4.27 16 24 O -0.20 -9.21 15.06 26.12 0.39 -8.82 16 25 C -0.04 -0.89 9.52 22.26 0.21 -0.68 16 26 C 0.09 1.84 7.31 22.54 0.16 2.00 16 27 F -0.11 -2.09 17.10 44.97 0.77 -1.32 16 28 H 0.08 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.19 3.25 6.29 -2.91 -0.02 3.23 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.12 4.13 8.09 -2.39 -0.02 4.11 16 34 H 0.39 20.33 6.60 -74.05 -0.49 19.85 16 35 H 0.27 12.73 8.31 -92.70 -0.77 11.96 16 36 H 0.11 3.66 8.09 -2.39 -0.02 3.64 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.20 3.48 7.60 -2.91 -0.02 3.45 16 Total: -1.00 -66.50 344.31 3.05 -63.45 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.67 Total: 27.05 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 4.54 Total: 20.37 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -3.01 Total: -71.25 kcal Atomic # 8 Polarization: -75.49 SS G_CDS: -1.94 Total: -77.43 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.77 Total: -1.32 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.11 kcal Total: -66.50 3.05 -63.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638886587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.588 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds