Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42899 * 109.47142 * 184.99799 * 3 2 1 5 5 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 6 6 C 1.34774 * 120.00233 * 60.00569 * 5 2 1 7 7 O 1.21284 * 119.99952 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00212 * 179.97438 * 6 5 2 9 9 S 1.80994 * 109.47015 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99935 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99970 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00410 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00049 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46582 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47115 * 120.00029 * 14 12 10 17 17 H 1.48491 * 109.46905 * 240.00176 * 14 12 10 18 18 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 19 19 C 1.38258 * 120.00207 * 269.72981 * 18 2 1 20 20 C 1.38212 * 120.00288 * 179.77146 * 19 18 2 21 21 C 1.38261 * 119.99752 * 0.49595 * 20 19 18 22 22 C 1.38216 * 119.99923 * 359.75490 * 21 20 19 23 23 N 1.48014 * 119.99828 * 179.97438 * 22 21 20 24 24 O 1.21802 * 119.99941 * 180.02562 * 23 22 21 25 25 O 1.21807 * 120.00271 * 0.02562 * 23 22 21 26 26 C 1.38217 * 120.00134 * 90.00038 * 18 2 1 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.08994 * 109.47510 * 305.00071 * 3 2 1 31 31 H 1.09001 * 109.47096 * 64.99934 * 3 2 1 32 32 H 0.96701 * 114.00059 * 180.02562 * 4 3 2 33 33 H 0.97004 * 119.99916 * 240.00270 * 5 2 1 34 34 H 1.08992 * 109.47158 * 299.99655 * 8 6 5 35 35 H 1.08996 * 109.46805 * 59.99741 * 8 6 5 36 36 H 0.96998 * 120.00451 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99798 * 359.97438 * 19 18 2 38 38 H 1.08001 * 119.99979 * 180.22514 * 20 19 18 39 39 H 1.07994 * 119.99760 * 179.72518 * 21 20 19 40 40 H 1.08002 * 119.99847 * 0.02562 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4642 1.4442 -0.1174 5 7 2.0184 -0.6906 -1.1961 6 6 1.6929 -0.2301 -2.4202 7 8 0.9953 0.7558 -2.5315 8 6 2.1957 -0.9402 -3.6507 9 16 1.5917 -0.0874 -5.1285 10 6 2.3090 -1.0991 -6.3802 11 1 2.9125 -1.9515 -6.1055 12 6 2.0975 -0.8011 -7.7192 13 7 1.3607 0.2370 -8.0541 14 14 2.8574 -1.8741 -9.0462 15 1 3.6334 -2.9701 -8.4123 16 1 1.7819 -2.4536 -9.8903 17 1 3.7605 -1.0517 -9.8907 18 6 2.0323 -0.7104 1.2305 19 6 2.2681 0.0015 2.3920 20 6 2.7242 -0.6508 3.5219 21 6 2.9546 -2.0137 3.4876 22 6 2.7238 -2.7245 2.3250 23 7 2.9710 -4.1834 2.2882 24 8 2.7681 -4.8098 1.2635 25 8 3.3772 -4.7576 3.2826 26 6 2.2627 -2.0728 1.1963 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 1.9815 -0.8417 31 1 1.7517 1.9298 0.9314 32 1 3.8573 2.3277 -0.1236 33 1 2.5760 -1.4793 -1.1071 34 1 3.2856 -0.9398 -3.6506 35 1 1.8327 -1.9680 -3.6508 36 1 1.2132 0.4455 -8.9898 37 1 2.0926 1.0669 2.4173 38 1 2.9049 -0.0952 4.4302 39 1 3.3152 -2.5226 4.3692 40 1 2.0831 -2.6282 0.2876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648782413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -53.219603 kcal Electronic energy + Delta-G solvation = -26941.230233 eV Core-core repulsion = 22851.213786 eV Total energy + Delta-G solvation = -4090.016446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45446 -40.91923 -39.18713 -37.09732 -36.80020 -35.28628 -32.78857 -32.44279 -31.95969 -30.59507 -28.63821 -27.10195 -26.21368 -25.49405 -24.00902 -23.06121 -21.40996 -19.80217 -19.31452 -18.86744 -17.91812 -17.76963 -17.61276 -17.23718 -16.54165 -16.33740 -15.47583 -15.24055 -14.90226 -14.81150 -14.40709 -14.31269 -14.03711 -13.65063 -13.34678 -12.94996 -12.83198 -12.65049 -12.61106 -12.45191 -11.99371 -11.86099 -11.79373 -11.55401 -11.36890 -11.19228 -11.07461 -11.02007 -10.76419 -10.26137 -10.04854 -9.83226 -9.75068 -9.30529 -9.09528 -9.01573 -8.26979 -6.51982 -6.23600 -3.93942 -0.50142 0.42906 1.01712 1.09651 2.74413 2.92877 2.98922 3.21449 3.26717 3.31624 3.58872 3.68198 3.88742 3.99283 4.19232 4.25048 4.32653 4.45050 4.60062 4.78791 4.90447 5.03065 5.04946 5.12193 5.19402 5.25174 5.36035 5.42881 5.53068 5.58297 5.67293 5.67671 5.80456 5.86819 6.07301 6.12736 6.14504 6.46911 7.37062 7.41693 7.55592 7.59563 8.34460 8.48767 9.22544 10.83857 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.002806 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.965080 B = 9974.672970 C =11396.354859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.226 3.774 3 C 0.060 3.940 4 O -0.564 6.564 5 N -0.726 5.726 6 C 0.544 3.456 7 O -0.516 6.516 8 C -0.155 4.155 9 S -0.058 6.058 10 C -0.535 4.535 11 H 0.074 0.926 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.068 4.068 19 C -0.053 4.053 20 C -0.113 4.113 21 C -0.059 4.059 22 C -0.039 4.039 23 N 0.028 4.972 24 O -0.154 6.154 25 O -0.162 6.162 26 C -0.053 4.053 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.380 0.620 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 0.994 26.026 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.138 3.862 3 C -0.018 4.018 4 O -0.369 6.369 5 N -0.381 5.381 6 C 0.331 3.669 7 O -0.390 6.390 8 C -0.305 4.305 9 S 0.169 5.831 10 C -0.683 4.683 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.069 4.069 19 C -0.071 4.071 20 C -0.131 4.131 21 C -0.078 4.078 22 C -0.122 4.122 23 N 0.547 4.453 24 O -0.371 6.371 25 O -0.377 6.377 26 C -0.072 4.072 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.227 0.773 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.475 2.792 25.692 25.847 hybrid contribution 1.783 -2.036 -0.640 2.781 sum 2.259 0.756 25.052 25.165 Atomic orbital electron populations 1.22254 0.91626 1.03700 1.04602 1.19115 0.94508 0.90607 0.81923 1.22713 0.82220 0.95493 1.01407 1.86477 1.19397 1.33738 1.97269 1.46101 1.55094 1.32456 1.04463 1.20234 0.79133 0.84094 0.83448 1.90618 1.36756 1.25499 1.86166 1.23545 1.04593 1.03987 0.98402 1.85298 1.67429 1.38589 0.91823 1.22916 1.37148 1.15658 0.92561 0.90831 1.24985 0.95031 0.95578 0.97959 1.70019 1.36375 1.25903 1.18083 0.86117 0.78892 0.79874 0.80645 1.19546 1.20551 1.20576 1.19832 0.98995 0.92141 0.95959 1.21524 0.93059 1.01113 0.91392 1.21203 0.99564 0.92888 0.99467 1.21093 0.95480 0.94629 0.96581 1.21052 1.12338 0.80416 0.98347 1.43626 0.97951 1.03400 1.00283 1.94586 1.54932 1.66416 1.21198 1.94532 1.47009 1.70670 1.25513 1.20840 0.94375 0.94459 0.97564 0.88476 0.91474 0.91489 0.89896 0.93126 0.77315 0.76585 0.89115 0.89117 0.92249 0.83706 0.83284 0.82893 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.38 37.16 0.31 -1.38 16 2 C 0.23 2.37 0.68 -132.97 -0.09 2.28 16 3 C 0.06 0.61 5.13 37.16 0.19 0.80 16 4 O -0.56 -5.89 13.10 -35.23 -0.46 -6.35 16 5 N -0.73 -9.38 4.62 -48.68 -0.23 -9.60 16 6 C 0.54 9.44 7.27 -10.99 -0.08 9.36 16 7 O -0.52 -10.24 12.13 5.55 0.07 -10.17 16 8 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.53 -15.13 9.50 30.94 0.29 -14.83 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 14 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.07 -0.59 4.60 -104.62 -0.48 -1.07 16 19 C -0.05 -0.33 9.07 -39.58 -0.36 -0.69 16 20 C -0.11 -0.59 10.05 -39.58 -0.40 -0.99 16 21 C -0.06 -0.42 9.56 -39.58 -0.38 -0.80 16 22 C -0.04 -0.38 6.85 -79.95 -0.55 -0.93 16 23 N 0.03 0.34 4.45 33.96 0.15 0.49 16 24 O -0.15 -2.10 18.45 -29.46 -0.54 -2.64 16 25 O -0.16 -2.04 18.45 -29.46 -0.54 -2.58 16 26 C -0.05 -0.51 8.47 -39.58 -0.34 -0.84 16 27 H 0.10 1.28 6.17 -51.93 -0.32 0.96 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.07 6.32 -51.93 -0.33 0.74 16 31 H 0.05 0.34 6.21 -51.93 -0.32 0.02 16 32 H 0.38 2.51 9.12 45.56 0.42 2.93 16 33 H 0.40 4.57 6.67 -40.82 -0.27 4.30 16 34 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.15 0.62 6.05 -52.48 -0.32 0.31 16 38 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.15 0.87 7.61 -52.49 -0.40 0.47 16 40 H 0.15 1.49 6.26 -52.49 -0.33 1.16 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -35.48 358.22 -7.94 -43.42 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.53 Total: 4.55 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.75 Total: -9.96 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.66 Total: -34.30 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.48 Total: -21.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.48 -7.94 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648782413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.804 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds