Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99445 * 2 1 4 4 N 1.46505 * 109.47325 * 124.99684 * 3 2 1 5 5 C 1.46500 * 119.99756 * 274.99959 * 4 3 2 6 6 C 1.50705 * 109.46970 * 275.83511 * 5 4 3 7 7 H 1.08002 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99572 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99665 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00141 * 0.02562 * 8 6 5 11 11 H 1.48509 * 109.46778 * 90.00286 * 10 8 6 12 12 H 1.48498 * 109.47224 * 209.99617 * 10 8 6 13 13 H 1.48496 * 109.47661 * 330.00107 * 10 8 6 14 14 S 1.65598 * 120.00006 * 94.99695 * 4 3 2 15 15 O 1.42097 * 106.40175 * 151.28381 * 14 4 3 16 16 O 1.42110 * 106.40241 * 18.36562 * 14 4 3 17 17 C 1.76200 * 107.21898 * 264.82562 * 14 4 3 18 18 C 1.38630 * 120.47074 * 349.20948 * 17 14 4 19 19 C 1.38577 * 118.48920 * 180.02562 * 18 17 14 20 20 C 1.38631 * 119.35893 * 0.02562 * 19 18 17 21 21 N 1.31479 * 120.90327 * 359.97438 * 20 19 18 22 22 C 1.32772 * 121.64058 * 0.02562 * 21 20 19 23 23 C 1.48068 * 119.72487 * 179.97438 * 22 21 20 24 24 O 1.21431 * 120.00178 * 185.36846 * 23 22 21 25 25 O 1.34682 * 120.00072 * 5.37266 * 23 22 21 26 26 C 1.45190 * 117.00143 * 179.97438 * 25 23 22 27 27 H 1.08001 * 119.99168 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00495 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00971 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47539 * 4.99725 * 3 2 1 31 31 H 1.09001 * 109.47413 * 244.99407 * 3 2 1 32 32 H 1.08992 * 109.47216 * 35.84114 * 5 4 3 33 33 H 1.08999 * 109.46745 * 155.84330 * 5 4 3 34 34 H 0.97000 * 119.99831 * 180.02562 * 9 8 6 35 35 H 1.07998 * 120.75449 * 359.97438 * 18 17 14 36 36 H 1.07996 * 120.32275 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.54785 * 180.26022 * 20 19 18 38 38 H 1.08999 * 109.47381 * 60.00046 * 26 25 23 39 39 H 1.09007 * 109.47199 * 180.02562 * 26 25 23 40 40 H 1.09000 * 109.47680 * 299.99897 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5282 1.7624 2.4523 6 6 2.5793 3.2661 2.5376 7 1 2.9236 3.8436 1.6924 8 6 2.1864 3.9046 3.6948 9 7 2.2306 5.2170 3.7691 10 14 1.5916 2.9058 5.1569 11 1 2.7456 2.5697 6.0291 12 1 0.6023 3.6996 5.9291 13 1 0.9542 1.6542 4.6750 14 16 4.5712 0.8763 0.9175 15 8 5.3314 1.5997 1.8755 16 8 4.8207 0.9382 -0.4802 17 6 4.6889 -0.8228 1.3690 18 6 3.6354 -1.4540 2.0120 19 6 3.7723 -2.7912 2.3489 20 6 4.9492 -3.4538 2.0363 21 7 5.9331 -2.8310 1.4259 22 6 5.8425 -1.5507 1.0859 23 6 6.9770 -0.8911 0.4001 24 8 6.9396 0.3014 0.1742 25 8 8.0504 -1.6139 0.0268 26 6 9.1248 -0.9015 -0.6412 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6213 1.4027 -0.9313 32 1 1.5032 1.4244 2.6041 33 1 3.1701 1.3329 3.2214 34 1 1.9545 5.6662 4.5833 35 1 2.7288 -0.9156 2.2459 36 1 2.9699 -3.3122 2.8500 37 1 5.0575 -4.4970 2.2936 38 1 9.5103 -0.1239 0.0181 39 1 9.9253 -1.5992 -0.8876 40 1 8.7454 -0.4467 -1.5563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669401483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -98.745238 kcal Electronic energy + Delta-G solvation = -28662.003996 eV Core-core repulsion = 24570.013410 eV Total energy + Delta-G solvation = -4091.990586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29334 -40.91919 -38.29815 -38.26449 -37.92239 -36.77861 -34.96339 -34.14509 -33.66791 -33.14974 -29.94710 -29.08156 -26.71714 -26.10102 -25.32021 -23.87835 -22.88641 -21.07520 -20.15151 -19.75700 -19.16438 -18.76702 -18.49905 -18.24713 -17.88490 -17.44442 -17.16709 -16.48223 -16.29525 -15.91474 -15.52324 -15.32078 -15.17189 -14.73394 -14.51682 -14.48990 -14.39341 -14.12484 -13.86749 -13.46515 -13.29750 -13.25299 -13.15508 -12.97478 -12.56545 -12.48354 -12.39339 -12.13203 -12.06903 -12.02964 -11.88088 -11.68102 -11.54469 -10.98970 -10.76678 -10.75343 -10.31062 -9.92197 -8.26506 -6.33250 -1.16955 -0.76142 -0.33392 0.94085 1.13236 1.35808 1.38309 1.43679 1.51121 2.05205 2.31432 2.37806 2.68591 2.75376 3.07077 3.34880 3.51370 3.57430 3.64920 3.83730 3.96439 4.13150 4.14303 4.18876 4.21957 4.36317 4.50409 4.59145 4.64385 4.73454 4.77224 4.87805 4.95741 5.11335 5.24039 5.25737 5.47686 5.58319 5.73887 5.96066 6.02762 6.31569 6.37908 6.70122 7.29103 8.91403 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.004791 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.527183 B = 5843.112996 C = 6283.715832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.194 4.194 3 C 0.135 3.865 4 N -0.980 5.980 5 C 0.230 3.770 6 C -0.543 4.543 7 H 0.025 0.975 8 C 0.006 3.994 9 N -0.950 5.950 10 Si 0.939 3.061 11 H -0.272 1.272 12 H -0.279 1.279 13 H -0.213 1.213 14 S 2.699 3.301 15 O -0.984 6.984 16 O -0.975 6.975 17 C -0.677 4.677 18 C -0.011 4.011 19 C -0.122 4.122 20 C 0.141 3.859 21 N -0.453 5.453 22 C 0.158 3.842 23 C 0.498 3.502 24 O -0.513 6.513 25 O -0.324 6.324 26 C 0.018 3.982 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.267 0.733 35 H 0.173 0.827 36 H 0.213 0.787 37 H 0.230 0.770 38 H 0.065 0.935 39 H 0.152 0.848 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -25.378 -3.977 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.214 4.214 3 C 0.010 3.990 4 N -0.820 5.820 5 C 0.106 3.894 6 C -0.583 4.583 7 H 0.043 0.957 8 C -0.192 4.192 9 N -0.590 5.590 10 Si 0.760 3.240 11 H -0.198 1.198 12 H -0.204 1.204 13 H -0.135 1.135 14 S 2.788 3.212 15 O -0.973 6.973 16 O -0.965 6.965 17 C -0.766 4.766 18 C -0.036 4.036 19 C -0.141 4.141 20 C -0.017 4.017 21 N -0.166 5.166 22 C 0.020 3.980 23 C 0.342 3.658 24 O -0.402 6.402 25 O -0.238 6.238 26 C -0.074 4.074 27 H 0.146 0.854 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.191 0.809 36 H 0.230 0.770 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.170 0.830 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.614 -24.798 -4.481 25.251 hybrid contribution -0.489 1.041 0.746 1.371 sum 1.125 -23.757 -3.736 24.075 Atomic orbital electron populations 1.24113 0.94938 1.03380 0.96499 1.23271 0.97142 0.97430 1.03522 1.20613 0.92818 0.97886 0.87639 1.57295 1.27874 1.79154 1.17648 1.19399 0.97426 0.93490 0.79104 1.21648 1.43951 0.92285 1.00377 0.95673 1.25982 0.95187 0.96037 1.01973 1.70086 1.49455 1.10258 1.29219 0.85859 0.78930 0.80766 0.78445 1.19769 1.20444 1.13489 1.01745 0.72232 0.74055 0.73178 1.93533 1.69423 1.70128 1.64262 1.93459 1.84024 1.86797 1.32261 1.31962 1.02459 1.27832 1.14374 1.21912 0.95897 0.96731 0.89052 1.23235 1.00690 0.93334 0.96885 1.24244 0.86875 1.02338 0.88197 1.67802 1.32175 1.06191 1.10411 1.19298 0.89590 0.92031 0.97076 1.21382 0.83518 0.84776 0.76157 1.90924 1.79637 1.16908 1.52708 1.86602 1.26768 1.41179 1.69246 1.23880 0.87168 0.99502 0.96863 0.85362 0.88304 0.86363 0.89304 0.89800 0.90889 0.94809 0.92380 0.80938 0.77039 0.75382 0.91586 0.83009 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 14.32 67.78 0.97 -1.97 16 2 C -0.19 -4.71 9.45 25.65 0.24 -4.47 16 3 C 0.13 4.63 6.10 85.63 0.52 5.15 16 4 N -0.98 -40.28 1.93 -523.89 -1.01 -41.29 16 5 C 0.23 10.29 3.43 85.63 0.29 10.58 16 6 C -0.54 -31.69 9.93 25.60 0.25 -31.43 16 7 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 8 C 0.01 0.33 5.47 84.65 0.46 0.80 16 9 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 10 Si 0.94 41.18 27.47 68.60 1.88 43.07 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.21 -7.56 6.54 99.48 0.65 -6.90 16 14 S 2.70 121.41 3.93 -56.49 -0.22 121.19 16 15 O -0.98 -54.07 16.51 -120.65 -1.99 -56.07 16 16 O -0.98 -46.64 14.22 -118.63 -1.69 -48.32 16 17 C -0.68 -22.94 5.87 22.62 0.13 -22.81 16 18 C -0.01 -0.24 8.98 22.44 0.20 -0.04 16 19 C -0.12 -1.55 10.12 22.44 0.23 -1.33 16 20 C 0.14 2.01 11.18 84.84 0.95 2.96 16 21 N -0.45 -11.47 10.12 -184.95 -1.87 -13.34 16 22 C 0.16 5.30 6.75 41.87 0.28 5.58 16 23 C 0.50 18.63 7.83 70.43 0.55 19.18 16 24 O -0.51 -23.09 11.59 30.04 0.35 -22.74 16 25 O -0.32 -9.65 10.39 -55.92 -0.58 -10.23 16 26 C 0.02 0.40 10.56 113.37 1.20 1.60 16 27 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 28 H 0.10 2.02 7.84 -2.91 -0.02 2.00 16 29 H 0.12 2.45 7.34 -2.91 -0.02 2.43 16 30 H 0.09 3.14 7.76 -2.38 -0.02 3.12 16 31 H 0.08 2.96 6.88 -2.39 -0.02 2.95 16 32 H 0.07 2.78 7.17 -2.39 -0.02 2.76 16 33 H 0.03 1.48 7.15 -2.39 -0.02 1.47 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.17 3.52 6.32 -2.91 -0.02 3.51 16 36 H 0.21 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.15 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -93.72 356.27 2.47 -91.26 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.01 Total: 12.88 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 6.29 Total: -16.21 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -2.58 Total: -114.83 kcal Atomic # 8 Polarization: -133.45 SS G_CDS: -3.91 Total: -137.36 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.88 Total: 43.07 kcal Atomic # 16 Polarization: 121.41 SS G_CDS: -0.22 Total: 121.19 kcal Total: -93.72 2.47 -91.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669401483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.490 kcal (2) G-P(sol) polarization free energy of solvation -93.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds