Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 C 1.50695 * 109.47245 * 240.00265 * 2 1 3 5 5 O 1.21281 * 120.00440 * 239.99852 * 4 2 1 6 6 N 1.34780 * 120.00234 * 59.99733 * 4 2 1 7 7 C 1.46497 * 120.00114 * 180.02562 * 6 4 2 8 8 C 1.53501 * 114.20643 * 155.00293 * 7 6 4 9 9 N 1.47065 * 87.98741 * 87.51773 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47145 * 60.00107 * 18 16 14 20 20 H 1.48496 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47229 * 300.00299 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 C 1.52999 * 109.47256 * 120.00006 * 2 1 3 24 24 F 1.39898 * 109.47227 * 180.02562 * 23 2 1 25 25 F 1.39904 * 109.47177 * 299.99948 * 23 2 1 26 26 F 1.39898 * 109.47284 * 60.00374 * 23 2 1 27 27 H 1.09000 * 109.47071 * 299.99519 * 1 2 3 28 28 H 1.08996 * 109.47419 * 60.00059 * 1 2 3 29 29 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99797 * 0.02562 * 6 4 2 31 31 H 1.08999 * 113.28436 * 21.93088 * 7 6 4 32 32 H 1.09001 * 113.46643 * 332.73474 * 8 7 6 33 33 H 1.08996 * 113.46488 * 202.29934 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9407 -3.6507 8 6 1.3231 -0.7329 -4.8971 9 7 2.1074 0.4786 -5.1799 10 6 1.8935 1.6460 -5.8186 11 8 0.8174 1.8682 -6.3317 12 6 2.9920 2.6747 -5.8960 13 16 2.4012 4.1205 -6.8108 14 6 3.8430 5.1316 -6.7493 15 1 4.7299 4.7773 -6.2451 16 6 3.8409 6.3808 -7.3543 17 7 2.7617 6.8103 -7.9735 18 14 5.3691 7.4530 -7.2886 19 1 6.5006 6.7425 -7.9367 20 1 5.1101 8.7284 -8.0037 21 1 5.7113 7.7408 -5.8725 22 6 3.2298 -0.1470 -4.4646 23 6 2.0400 -0.7212 1.2492 24 9 3.4390 -0.7207 1.2495 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.1493 0.5390 -2.5436 31 1 2.4704 -1.9790 -3.4663 32 1 0.2774 -0.5291 -4.6665 33 1 1.4453 -1.5141 -5.6474 34 1 3.8540 2.2480 -6.4089 35 1 3.2806 2.9747 -4.8886 36 1 2.7601 7.6835 -8.3961 37 1 3.8547 -0.7738 -5.1010 38 1 3.8087 0.5559 -3.8656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688634054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -185.344885 kcal Electronic energy + Delta-G solvation = -27045.727307 eV Core-core repulsion = 22408.124738 eV Total energy + Delta-G solvation = -4637.602569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.40871 -47.92419 -47.81540 -41.07045 -39.63791 -37.66442 -34.83607 -33.71781 -32.48995 -30.47243 -27.96387 -26.93171 -26.21820 -25.51766 -24.39056 -21.95827 -21.00713 -19.22905 -19.16162 -18.75993 -17.97492 -17.80196 -17.26366 -16.73875 -16.51707 -15.68893 -15.48339 -15.36910 -14.86768 -14.85549 -14.63139 -14.35953 -14.25233 -14.03299 -14.00938 -13.96484 -13.80055 -13.59363 -13.17161 -13.10459 -12.93045 -12.67505 -12.51427 -12.20866 -12.01142 -11.90352 -11.35647 -11.09644 -11.08225 -10.82042 -10.49785 -9.89668 -9.68443 -9.47493 -9.11790 -8.79490 -8.32799 -6.58264 -6.27500 -3.99298 1.93481 2.06380 2.53766 2.61644 2.93542 3.19501 3.19988 3.25020 3.28383 3.47462 3.59233 3.64571 3.94504 4.14501 4.15759 4.32223 4.41144 4.46964 4.78275 4.87118 4.91756 5.02233 5.07851 5.15141 5.28200 5.29633 5.35947 5.41934 5.46270 5.78066 5.84140 5.96814 6.05281 6.84371 7.53485 7.54327 7.68543 8.29031 8.39840 9.17758 10.79833 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002408 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.412468 B =11626.984305 C =12575.991888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.165 4.165 3 H 0.144 0.856 4 C 0.529 3.471 5 O -0.517 6.517 6 N -0.698 5.698 7 C 0.105 3.895 8 C 0.099 3.901 9 N -0.655 5.655 10 C 0.562 3.438 11 O -0.512 6.512 12 C -0.145 4.145 13 S -0.059 6.059 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.274 1.274 22 C 0.088 3.912 23 C 0.474 3.526 24 F -0.172 7.172 25 F -0.180 7.180 26 F -0.172 7.172 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.098 0.902 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -17.435 17.061 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.161 0.839 4 C 0.313 3.687 5 O -0.391 6.391 6 N -0.350 5.350 7 C -0.001 4.001 8 C -0.025 4.025 9 N -0.395 5.395 10 C 0.352 3.648 11 O -0.385 6.385 12 C -0.296 4.296 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.037 4.037 23 C 0.419 3.581 24 F -0.154 7.154 25 F -0.162 7.162 26 F -0.153 7.153 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.160 -17.451 16.172 24.154 hybrid contribution 2.179 0.856 0.659 2.432 sum -1.982 -16.595 16.831 23.720 Atomic orbital electron populations 1.21872 0.88913 1.04865 1.05309 1.22654 1.01654 1.03333 0.91092 0.83873 1.19738 0.80320 0.84491 0.84125 1.90830 1.36647 1.25334 1.86338 1.45386 1.53325 1.32029 1.04226 1.22330 0.95878 0.97928 0.83957 1.23265 0.97983 0.87290 0.94010 1.49816 1.16688 1.15088 1.57911 1.19979 0.89095 0.80110 0.75629 1.90728 1.26331 1.77287 1.44170 1.23476 0.99778 1.00557 1.05752 1.85393 1.20404 1.08189 1.69268 1.22807 0.99647 1.04188 1.41886 0.90966 1.24990 0.97198 0.96908 0.94395 1.69999 1.27515 1.19643 1.33091 0.86216 0.81697 0.79079 0.78479 1.19899 1.20757 1.19897 1.23543 0.91692 0.95491 0.92984 1.19711 0.76015 0.77823 0.84527 1.93231 1.29151 1.96333 1.96654 1.93198 1.88555 1.80818 1.53583 1.93208 1.88287 1.37157 1.96665 0.89610 0.89497 0.90391 0.75484 0.85356 0.89859 0.88331 0.89275 0.89381 0.92052 0.88406 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.85 37.16 0.33 -0.35 16 2 C -0.16 -1.07 2.71 -91.78 -0.25 -1.32 16 3 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.53 4.56 6.92 -10.99 -0.08 4.48 16 5 O -0.52 -6.25 14.43 5.56 0.08 -6.17 16 6 N -0.70 -5.10 5.29 -53.49 -0.28 -5.38 16 7 C 0.11 0.79 4.61 -67.67 -0.31 0.47 16 8 C 0.10 0.85 8.38 -8.51 -0.07 0.78 16 9 N -0.66 -8.05 3.69 -185.08 -0.68 -8.74 16 10 C 0.56 10.03 8.10 -10.99 -0.09 9.94 16 11 O -0.51 -11.19 16.64 5.56 0.09 -11.10 16 12 C -0.15 -2.84 5.98 36.00 0.22 -2.63 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 14 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 15 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 18 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.09 0.77 8.25 -8.38 -0.07 0.70 16 23 C 0.47 4.24 2.42 37.16 0.09 4.33 16 24 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16 25 F -0.18 -1.52 16.80 2.25 0.04 -1.48 16 26 F -0.17 -1.78 15.88 2.25 0.04 -1.74 16 27 H 0.08 0.32 7.80 -51.93 -0.41 -0.09 16 28 H 0.09 0.28 7.56 -51.93 -0.39 -0.11 16 29 H 0.08 0.39 7.80 -51.93 -0.41 -0.02 16 30 H 0.41 2.61 8.18 -40.82 -0.33 2.28 16 31 H 0.13 0.89 7.45 -51.93 -0.39 0.50 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -36.27 356.91 -6.27 -42.54 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.43 Total: -2.40 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.03 Total: 3.69 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.23 Total: -39.09 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.27 -6.27 -42.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688634054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.804 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds