Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 C 1.50695 * 109.47245 * 240.00265 * 2 1 3 5 5 O 1.21281 * 120.00440 * 239.99852 * 4 2 1 6 6 N 1.34780 * 120.00234 * 59.99733 * 4 2 1 7 7 C 1.46497 * 120.00114 * 180.02562 * 6 4 2 8 8 C 1.53501 * 114.20643 * 155.00293 * 7 6 4 9 9 N 1.47065 * 87.98741 * 87.51773 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47145 * 60.00107 * 18 16 14 20 20 H 1.48496 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47229 * 300.00299 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 C 1.52999 * 109.47256 * 120.00006 * 2 1 3 24 24 F 1.39898 * 109.47227 * 180.02562 * 23 2 1 25 25 F 1.39904 * 109.47177 * 299.99948 * 23 2 1 26 26 F 1.39898 * 109.47284 * 60.00374 * 23 2 1 27 27 H 1.09000 * 109.47071 * 299.99519 * 1 2 3 28 28 H 1.08996 * 109.47419 * 60.00059 * 1 2 3 29 29 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99797 * 0.02562 * 6 4 2 31 31 H 1.08999 * 113.28436 * 21.93088 * 7 6 4 32 32 H 1.09001 * 113.46643 * 332.73474 * 8 7 6 33 33 H 1.08996 * 113.46488 * 202.29934 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9407 -3.6507 8 6 1.3231 -0.7329 -4.8971 9 7 2.1074 0.4786 -5.1799 10 6 1.8935 1.6460 -5.8186 11 8 0.8174 1.8682 -6.3317 12 6 2.9920 2.6747 -5.8960 13 16 2.4012 4.1205 -6.8108 14 6 3.8430 5.1316 -6.7493 15 1 4.7299 4.7773 -6.2451 16 6 3.8409 6.3808 -7.3543 17 7 2.7617 6.8103 -7.9735 18 14 5.3691 7.4530 -7.2886 19 1 6.5006 6.7425 -7.9367 20 1 5.1101 8.7284 -8.0037 21 1 5.7113 7.7408 -5.8725 22 6 3.2298 -0.1470 -4.4646 23 6 2.0400 -0.7212 1.2492 24 9 3.4390 -0.7207 1.2495 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.1493 0.5390 -2.5436 31 1 2.4704 -1.9790 -3.4663 32 1 0.2774 -0.5291 -4.6665 33 1 1.4453 -1.5141 -5.6474 34 1 3.8540 2.2480 -6.4089 35 1 3.2806 2.9747 -4.8886 36 1 2.7601 7.6835 -8.3961 37 1 3.8547 -0.7738 -5.1010 38 1 3.8087 0.5559 -3.8656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688634054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -211.627752 kcal Electronic energy + Delta-G solvation = -27046.867018 eV Core-core repulsion = 22408.124738 eV Total energy + Delta-G solvation = -4638.742280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.12645 -48.62958 -48.57887 -41.88784 -40.54556 -38.87930 -35.47058 -34.60167 -34.40962 -31.81379 -29.11297 -27.66749 -27.44460 -26.94563 -25.09422 -22.79498 -21.69213 -20.41678 -19.84699 -19.55185 -19.45791 -18.64221 -18.09792 -17.88191 -17.26172 -16.90194 -16.80359 -16.53307 -16.30668 -15.76080 -15.59675 -15.37046 -15.15549 -14.99582 -14.81308 -14.75080 -14.69171 -14.56015 -14.22813 -14.09931 -13.74609 -13.48339 -13.46954 -13.20133 -13.12123 -12.94876 -12.87968 -12.61785 -12.43562 -12.10080 -11.76425 -11.20466 -11.14225 -10.95760 -10.31630 -10.28704 -9.82882 -8.68934 -8.35983 -6.14515 1.20018 1.28120 1.42186 1.43104 1.43715 1.52192 1.56646 1.91175 1.98905 2.26284 2.64296 2.98226 2.98286 3.02396 3.15314 3.29916 3.55755 3.61151 3.79843 3.89837 3.98186 4.16438 4.31045 4.44872 4.49248 4.59747 4.60499 4.62775 4.66573 4.71586 4.84930 5.09682 5.31926 5.40099 6.18039 6.21537 6.55421 6.90847 7.05387 7.09003 8.72851 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002408 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.412468 B =11626.984305 C =12575.991888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 H 0.167 0.833 4 C 0.531 3.469 5 O -0.553 6.553 6 N -0.692 5.692 7 C 0.119 3.881 8 C 0.099 3.901 9 N -0.651 5.651 10 C 0.563 3.437 11 O -0.564 6.564 12 C -0.120 4.120 13 S -0.146 6.146 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 0.997 3.003 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.262 1.262 22 C 0.085 3.915 23 C 0.467 3.533 24 F -0.187 7.187 25 F -0.178 7.178 26 F -0.183 7.183 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.415 0.585 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.272 0.728 37 H 0.124 0.876 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -18.168 18.094 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 H 0.185 0.815 4 C 0.317 3.683 5 O -0.431 6.431 6 N -0.343 5.343 7 C 0.013 3.987 8 C -0.023 4.023 9 N -0.388 5.388 10 C 0.352 3.648 11 O -0.442 6.442 12 C -0.272 4.272 13 S 0.082 5.918 14 C -0.696 4.696 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.818 3.182 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.039 4.039 23 C 0.413 3.587 24 F -0.169 7.169 25 F -0.159 7.159 26 F -0.165 7.165 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.252 0.748 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.933 -18.231 17.240 25.263 hybrid contribution 1.794 0.910 0.436 2.058 sum -1.139 -17.320 17.677 24.774 Atomic orbital electron populations 1.21928 0.87244 1.04941 1.06615 1.22714 1.02855 1.03704 0.88723 0.81525 1.20020 0.79573 0.83948 0.84802 1.90819 1.38401 1.27014 1.86855 1.45386 1.52942 1.32024 1.03961 1.22255 0.94748 0.98376 0.83346 1.23575 0.97949 0.85754 0.95027 1.49707 1.19160 1.14352 1.55573 1.19516 0.87740 0.81430 0.76071 1.90707 1.27870 1.78699 1.46926 1.23271 1.00589 0.98013 1.05282 1.85535 1.22311 1.12499 1.71498 1.23150 0.99842 1.04689 1.41922 0.90093 1.26096 1.00703 0.98438 0.93703 1.70162 1.30045 1.20213 1.34214 0.85031 0.77231 0.76862 0.79060 1.18776 1.20360 1.18605 1.23897 0.91413 0.95470 0.93075 1.20107 0.75375 0.77645 0.85590 1.93198 1.30510 1.96384 1.96779 1.93199 1.88410 1.80631 1.53690 1.93182 1.88319 1.38180 1.96772 0.88574 0.87938 0.90949 0.74769 0.83899 0.89818 0.85909 0.88039 0.87725 0.91923 0.85851 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.85 71.98 0.64 -0.37 16 2 C -0.16 -1.73 2.71 -11.54 -0.03 -1.76 16 3 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.53 8.07 6.92 87.66 0.61 8.68 16 5 O -0.55 -12.56 14.43 -3.03 -0.04 -12.61 16 6 N -0.69 -8.32 5.29 -441.52 -2.34 -10.65 16 7 C 0.12 1.41 4.61 45.55 0.21 1.62 16 8 C 0.10 1.43 8.38 83.18 0.70 2.12 16 9 N -0.65 -14.52 3.69 -857.85 -3.16 -17.69 16 10 C 0.56 19.66 8.10 87.66 0.71 20.37 16 11 O -0.56 -24.98 16.64 -3.02 -0.05 -25.03 16 12 C -0.12 -4.63 5.98 71.24 0.43 -4.21 16 13 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 14 C -0.55 -30.73 9.50 67.95 0.65 -30.09 16 15 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 16 C 0.02 0.87 5.49 84.86 0.47 1.34 16 17 N -0.91 -54.98 13.22 21.65 0.29 -54.69 16 18 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 C 0.08 1.21 8.25 83.26 0.69 1.90 16 23 C 0.47 7.84 2.42 71.98 0.17 8.02 16 24 F -0.19 -3.98 16.40 44.97 0.74 -3.25 16 25 F -0.18 -2.78 16.80 44.97 0.76 -2.03 16 26 F -0.18 -3.68 15.88 44.97 0.71 -2.97 16 27 H 0.10 0.49 7.80 -2.39 -0.02 0.47 16 28 H 0.10 0.39 7.56 -2.39 -0.02 0.37 16 29 H 0.07 0.59 7.80 -2.39 -0.02 0.58 16 30 H 0.42 4.21 8.18 -92.70 -0.76 3.45 16 31 H 0.14 1.49 7.45 -2.39 -0.02 1.47 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 3.63 8.14 -2.40 -0.02 3.61 16 35 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.57 356.91 3.35 -78.21 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.36 Total: 7.33 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.23 Total: 7.62 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -5.21 Total: -83.03 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 2.21 Total: -8.24 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -81.57 3.35 -78.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688634054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.416 kcal (2) G-P(sol) polarization free energy of solvation -81.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds