Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 C 1.50701 * 109.47515 * 120.00568 * 2 1 3 5 5 O 1.21287 * 119.99731 * 119.99572 * 4 2 1 6 6 N 1.34767 * 119.99869 * 300.00480 * 4 2 1 7 7 C 1.46500 * 119.99895 * 179.97438 * 6 4 2 8 8 C 1.53501 * 114.20747 * 204.99407 * 7 6 4 9 9 N 1.47065 * 87.98741 * 220.14872 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31634 * 120.00298 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47644 * 89.99884 * 18 16 14 20 20 H 1.48506 * 109.47143 * 209.99830 * 18 16 14 21 21 H 1.48501 * 109.47120 * 329.99545 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 C 1.53002 * 109.46895 * 240.00870 * 2 1 3 24 24 F 1.39908 * 109.47105 * 299.99579 * 23 2 1 25 25 F 1.39894 * 109.47421 * 60.00118 * 23 2 1 26 26 F 1.39908 * 109.47287 * 179.97438 * 23 2 1 27 27 H 1.08999 * 109.47046 * 59.99174 * 1 2 3 28 28 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46908 * 299.99202 * 1 2 3 30 30 H 0.97001 * 120.00444 * 359.97438 * 6 4 2 31 31 H 1.09001 * 113.28417 * 338.06104 * 7 6 4 32 32 H 1.09001 * 113.46643 * 105.36573 * 8 7 6 33 33 H 1.08996 * 113.46488 * 334.93033 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.96995 * 120.00138 * 180.02562 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6967 1.1189 6 7 1.7068 -0.2503 2.4544 7 6 2.1948 -0.9413 3.6505 8 6 1.3233 -0.7336 4.8970 9 7 2.5624 -0.6273 5.6820 10 6 2.9259 -0.8630 6.9582 11 8 2.1080 -1.2686 7.7566 12 6 4.3483 -0.6215 7.3934 13 16 4.5191 -1.0266 9.1492 14 6 6.2274 -0.6635 9.3822 15 1 6.8212 -0.3053 8.5543 16 6 6.8086 -0.8319 10.6313 17 7 8.0850 -0.5612 10.8053 18 14 5.7798 -1.4442 12.0653 19 1 5.8334 -2.9273 12.1154 20 1 6.3159 -0.8864 13.3329 21 1 4.3723 -1.0054 11.8876 22 6 3.2287 -0.1446 4.4630 23 6 2.0400 -0.7211 -1.2494 24 9 1.5736 -2.0402 -1.2495 25 9 1.5737 -0.0615 -2.3915 26 9 3.4390 -0.7206 -1.2498 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.1494 0.5386 2.5436 31 1 2.4705 -1.9796 3.4659 32 1 0.7196 -1.6039 5.1544 33 1 0.7443 0.1895 4.8728 34 1 4.6034 0.4265 7.2362 35 1 5.0191 -1.2504 6.8081 36 1 8.4912 -0.6792 11.6782 37 1 3.1519 0.9340 4.3245 38 1 4.2485 -0.5129 4.3509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688634055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -184.643777 kcal Electronic energy + Delta-G solvation = -26611.101957 eV Core-core repulsion = 21973.529791 eV Total energy + Delta-G solvation = -4637.572167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.49330 -48.01539 -47.89238 -41.09069 -39.79068 -37.78021 -34.99727 -34.01575 -32.46844 -30.53160 -27.98447 -27.05385 -26.28426 -25.63032 -24.43336 -22.10672 -21.17274 -19.45701 -19.08969 -18.85271 -18.17610 -17.77414 -17.31654 -16.94704 -16.78923 -15.95687 -15.54304 -15.11267 -14.96446 -14.84621 -14.70416 -14.44569 -14.33775 -14.13208 -14.08675 -14.03022 -13.84096 -13.51254 -13.29780 -13.10703 -12.99977 -12.82046 -12.80197 -12.60050 -12.04247 -12.01296 -11.52954 -11.29567 -11.03307 -10.66931 -10.58376 -9.89966 -9.77207 -9.60105 -9.03436 -8.87485 -8.55480 -6.96823 -6.31557 -4.04322 1.83717 1.91859 2.31389 2.58655 2.83208 3.07020 3.19329 3.31215 3.47658 3.48017 3.51500 3.59008 3.86177 4.04897 4.19902 4.27360 4.31404 4.34084 4.57746 4.67355 4.73796 4.87839 4.93790 5.04037 5.07350 5.21025 5.26039 5.34077 5.40757 5.67795 5.71655 5.87979 5.95919 6.70310 7.44768 7.58198 7.91388 8.27640 8.39015 9.14202 10.77597 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.001928 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.487190 B =14516.536206 C =15114.025007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.143 0.857 4 C 0.525 3.475 5 O -0.510 6.510 6 N -0.708 5.708 7 C 0.109 3.891 8 C 0.099 3.901 9 N -0.649 5.649 10 C 0.566 3.434 11 O -0.511 6.511 12 C -0.116 4.116 13 S -0.141 6.141 14 C -0.522 4.522 15 H 0.089 0.911 16 C 0.096 3.904 17 N -0.879 5.879 18 Si 0.857 3.143 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.086 3.914 23 C 0.472 3.528 24 F -0.171 7.171 25 F -0.181 7.181 26 F -0.172 7.172 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.406 0.594 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.601 5.269 -26.482 32.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 H 0.160 0.840 4 C 0.309 3.691 5 O -0.384 6.384 6 N -0.360 5.360 7 C 0.004 3.996 8 C -0.025 4.025 9 N -0.388 5.388 10 C 0.356 3.644 11 O -0.385 6.385 12 C -0.266 4.266 13 S 0.085 5.915 14 C -0.669 4.669 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.682 3.318 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.039 4.039 23 C 0.418 3.582 24 F -0.152 7.152 25 F -0.162 7.162 26 F -0.153 7.153 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.242 0.758 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.050 3.872 -25.010 31.085 hybrid contribution 0.715 0.752 -0.385 1.106 sum -17.335 4.623 -25.394 31.093 Atomic orbital electron populations 1.21873 0.88977 1.05020 1.05085 1.22656 1.01542 1.03208 0.91216 0.83956 1.19787 0.80464 0.84628 0.84215 1.90873 1.36176 1.25093 1.86227 1.45611 1.53714 1.32017 1.04699 1.23018 0.95566 0.98918 0.82137 1.23205 0.89898 1.02818 0.86612 1.49267 1.13147 1.67914 1.08459 1.19894 0.90133 0.76125 0.78246 1.90727 1.53255 1.44513 1.49983 1.23220 0.94358 1.05590 1.03468 1.84794 1.15467 1.88086 1.03106 1.22288 0.92120 1.51907 1.00593 0.89328 1.24715 0.94642 0.93748 0.98204 1.69936 1.10643 1.46522 1.24449 0.86734 0.82766 0.80333 0.82012 1.19148 1.19883 1.15945 1.23544 0.99312 0.99615 0.81391 1.19731 0.76093 0.77919 0.84486 1.93223 1.88262 1.37095 1.96648 1.93193 1.88563 1.80813 1.53656 1.93243 1.29085 1.96331 1.96641 0.89675 0.90317 0.89580 0.75826 0.84571 0.89425 0.89613 0.88436 0.88352 0.91886 0.89335 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 8.85 37.16 0.33 0.03 16 2 C -0.16 -0.69 2.71 -91.77 -0.25 -0.94 16 3 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 4 C 0.53 3.68 6.92 -10.99 -0.08 3.60 16 5 O -0.51 -6.02 14.43 5.55 0.08 -5.94 16 6 N -0.71 -3.28 5.28 -53.48 -0.28 -3.56 16 7 C 0.11 0.80 4.62 -67.67 -0.31 0.49 16 8 C 0.10 0.82 8.38 -8.51 -0.07 0.75 16 9 N -0.65 -8.10 3.69 -185.08 -0.68 -8.78 16 10 C 0.57 10.10 8.10 -10.99 -0.09 10.01 16 11 O -0.51 -11.05 16.64 5.56 0.09 -10.96 16 12 C -0.12 -2.25 5.98 36.00 0.22 -2.03 16 13 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 14 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 15 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 16 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 17 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 18 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 22 C 0.09 0.74 8.25 -8.38 -0.07 0.67 16 23 C 0.47 3.59 2.42 37.16 0.09 3.68 16 24 F -0.17 -1.64 15.88 2.25 0.04 -1.61 16 25 F -0.18 -1.25 16.80 2.25 0.04 -1.21 16 26 F -0.17 -1.71 16.40 2.25 0.04 -1.67 16 27 H 0.08 0.11 7.80 -51.93 -0.41 -0.30 16 28 H 0.08 0.25 7.80 -51.93 -0.41 -0.15 16 29 H 0.09 -0.02 7.56 -51.93 -0.39 -0.41 16 30 H 0.41 0.50 8.17 -40.82 -0.33 0.16 16 31 H 0.14 1.26 7.45 -51.93 -0.39 0.87 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 35 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -37.57 354.20 -5.75 -43.32 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -4.46 Total: -4.97 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.02 Total: 4.30 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.19 Total: -38.01 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.17 Total: -16.90 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.57 -5.75 -43.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688634055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.323 kcal (2) G-P(sol) polarization free energy of solvation -37.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds