Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 C 1.50697 * 109.47240 * 240.00630 * 2 1 3 5 5 O 1.21288 * 120.00038 * 239.99872 * 4 2 1 6 6 N 1.34777 * 120.00369 * 59.99713 * 4 2 1 7 7 C 1.47062 * 136.05408 * 359.63079 * 6 4 2 8 8 C 1.53759 * 87.88696 * 152.96243 * 7 6 4 9 9 N 1.46493 * 114.39494 * 272.67615 * 8 7 6 10 10 C 1.34781 * 119.99723 * 248.58371 * 9 8 7 11 11 O 1.21273 * 120.00375 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99742 * 180.02562 * 10 9 8 13 13 S 1.81001 * 109.47315 * 180.02562 * 12 10 9 14 14 C 1.76197 * 100.00123 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.38798 * 119.99705 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00588 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47243 * 90.00376 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00245 * 18 16 14 21 21 H 1.48496 * 109.47038 * 329.99926 * 18 16 14 22 22 C 1.47062 * 136.05906 * 179.97438 * 6 4 2 23 23 C 1.52997 * 109.47131 * 120.00131 * 2 1 3 24 24 F 1.39905 * 109.47157 * 180.02562 * 23 2 1 25 25 F 1.39900 * 109.47010 * 60.00508 * 23 2 1 26 26 F 1.39897 * 109.47422 * 300.00199 * 23 2 1 27 27 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47452 * 299.99869 * 1 2 3 29 29 H 1.09004 * 109.47552 * 59.99714 * 1 2 3 30 30 H 1.09001 * 113.46956 * 267.69463 * 7 6 4 31 31 H 1.08995 * 113.46945 * 38.13534 * 7 6 4 32 32 H 1.09004 * 114.08508 * 139.77602 * 8 7 6 33 33 H 0.96995 * 120.00383 * 68.58145 * 9 8 7 34 34 H 1.09010 * 109.47418 * 299.99914 * 12 10 9 35 35 H 1.08997 * 109.47565 * 60.00196 * 12 10 9 36 36 H 0.96999 * 120.01061 * 180.02562 * 17 16 14 37 37 H 1.08997 * 113.47299 * 321.86830 * 22 6 4 38 38 H 1.09005 * 113.46546 * 92.30734 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 0.9104 0.8650 -2.9892 8 6 1.8015 0.8261 -4.2417 9 7 3.0202 1.6329 -4.1424 10 6 3.1581 2.7411 -4.8969 11 8 2.2730 3.0708 -5.6577 12 6 4.4121 3.5707 -4.7952 13 16 4.2956 4.9812 -5.9235 14 6 5.8466 5.7551 -5.6070 15 1 6.5280 5.3249 -4.8880 16 6 6.1925 6.9177 -6.2817 17 7 5.3618 7.4424 -7.1576 18 14 7.8371 7.7378 -5.9466 19 1 8.8608 7.1911 -6.8732 20 1 7.7116 9.2026 -6.1563 21 1 8.2462 7.4718 -4.5441 22 6 1.9865 -0.6444 -3.8434 23 6 2.0400 -0.7213 1.2492 24 9 3.4390 -0.7208 1.2495 25 9 1.5737 -2.0403 1.2491 26 9 1.5736 -0.0619 2.3915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.1284 0.6007 -3.1873 31 1 1.0092 1.7847 -2.4128 32 1 1.2608 0.9714 -5.1770 33 1 3.7280 1.3695 -3.5336 34 1 4.5269 3.9320 -3.7731 35 1 5.2743 2.9604 -5.0638 36 1 5.6037 8.2547 -7.6294 37 1 3.0019 -1.0105 -3.9945 38 1 1.2316 -1.3071 -4.2668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721327383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -184.960328 kcal Electronic energy + Delta-G solvation = -27067.127094 eV Core-core repulsion = 22429.541201 eV Total energy + Delta-G solvation = -4637.585893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.41174 -47.92819 -47.81669 -41.21489 -39.32824 -38.08779 -34.66235 -33.60622 -32.48279 -30.19744 -28.55929 -27.01176 -26.51836 -25.54894 -23.99259 -21.95568 -20.75150 -19.74614 -18.94831 -18.69006 -17.99353 -17.85509 -17.23605 -16.91365 -16.20689 -16.10695 -15.60830 -15.14374 -14.85326 -14.81942 -14.75473 -14.36985 -14.24636 -14.05873 -13.97501 -13.92459 -13.73052 -13.49018 -13.38457 -13.23810 -12.93199 -12.61609 -12.50226 -12.44848 -12.08741 -11.85866 -11.39622 -11.10778 -11.07604 -10.81331 -10.36692 -9.88394 -9.67081 -9.31320 -9.16132 -9.10102 -8.32526 -6.57361 -6.27274 -3.98624 1.89559 2.03676 2.45461 2.80348 2.82522 3.19298 3.22929 3.26875 3.27422 3.42163 3.54229 3.60171 3.95545 4.08347 4.15138 4.31514 4.42208 4.44408 4.80539 4.86002 4.88936 4.94910 4.98536 5.04209 5.08388 5.18198 5.22649 5.37531 5.40794 5.66468 5.77726 6.04533 6.37578 7.08640 7.45776 7.49398 7.54812 8.29847 8.38544 9.18498 10.80103 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002293 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.772429 B =12206.330102 C =13159.601743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.159 4.159 3 H 0.141 0.859 4 C 0.552 3.448 5 O -0.519 6.519 6 N -0.642 5.642 7 C 0.077 3.923 8 C 0.115 3.885 9 N -0.719 5.719 10 C 0.538 3.462 11 O -0.511 6.511 12 C -0.155 4.155 13 S -0.058 6.058 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.098 3.902 23 C 0.474 3.526 24 F -0.172 7.172 25 F -0.172 7.172 26 F -0.180 7.180 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.088 0.912 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -16.872 14.169 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 H 0.158 0.842 4 C 0.340 3.660 5 O -0.394 6.394 6 N -0.378 5.378 7 C -0.047 4.047 8 C 0.007 3.993 9 N -0.373 5.373 10 C 0.325 3.675 11 O -0.384 6.384 12 C -0.305 4.305 13 S 0.169 5.831 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.025 4.025 23 C 0.419 3.581 24 F -0.153 7.153 25 F -0.154 7.154 26 F -0.161 7.161 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.149 0.851 33 H 0.237 0.763 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.670 -16.792 13.069 24.765 hybrid contribution 2.460 -0.040 1.713 2.998 sum -10.210 -16.832 14.782 24.619 Atomic orbital electron populations 1.21869 0.89101 1.04694 1.05161 1.22558 1.01519 1.03176 0.90855 0.84175 1.19237 0.80559 0.83817 0.82412 1.90844 1.37640 1.25501 1.85455 1.49519 1.51803 1.32011 1.04452 1.23879 0.96812 0.90029 0.93984 1.22105 0.87721 0.90190 0.99241 1.45657 1.19366 1.26973 1.45297 1.20389 0.88583 0.79721 0.78838 1.90711 1.42049 1.68953 1.36718 1.23545 0.97185 1.03028 1.06783 1.85373 1.25867 1.21421 1.50461 1.22858 1.03581 1.13116 1.28936 0.90880 1.24989 0.98024 0.96043 0.94461 1.70003 1.35486 1.20475 1.24307 0.86164 0.82144 0.78390 0.78793 1.20233 1.20725 1.19667 1.23484 1.03686 0.96842 0.78483 1.19726 0.76057 0.77810 0.84529 1.93235 1.29111 1.96327 1.96651 1.93206 1.88294 1.37199 1.96670 1.93194 1.88554 1.80815 1.53558 0.90582 0.89693 0.89587 0.87944 0.89378 0.85055 0.76346 0.89091 0.89002 0.92119 0.89376 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.83 37.16 0.33 -0.42 16 2 C -0.16 -1.18 2.59 -91.78 -0.24 -1.42 16 3 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.55 5.48 7.17 -10.99 -0.08 5.41 16 5 O -0.52 -7.26 15.61 5.55 0.09 -7.18 16 6 N -0.64 -4.98 3.64 -185.11 -0.67 -5.65 16 7 C 0.08 0.46 6.54 -8.38 -0.05 0.41 16 8 C 0.12 0.94 4.61 -67.69 -0.31 0.62 16 9 N -0.72 -7.84 5.40 -53.50 -0.29 -8.12 16 10 C 0.54 8.68 7.85 -10.98 -0.09 8.59 16 11 O -0.51 -10.07 15.46 5.56 0.09 -9.99 16 12 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 13 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 14 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 18 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.10 0.68 8.37 -8.53 -0.07 0.61 16 23 C 0.47 4.62 2.42 37.16 0.09 4.71 16 24 F -0.17 -2.05 16.40 2.25 0.04 -2.01 16 25 F -0.17 -1.93 15.88 2.25 0.04 -1.89 16 26 F -0.18 -1.61 16.80 2.25 0.04 -1.58 16 27 H 0.08 0.42 7.80 -51.93 -0.41 0.01 16 28 H 0.08 0.34 7.80 -51.93 -0.41 -0.07 16 29 H 0.09 0.31 6.33 -51.93 -0.33 -0.02 16 30 H 0.10 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.13 7.46 -51.93 -0.39 0.75 16 33 H 0.40 3.81 8.76 -40.82 -0.36 3.45 16 34 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -35.73 354.60 -6.22 -41.96 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.38 Total: -1.65 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 0.00 Total: 3.30 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.23 Total: -38.55 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.73 -6.22 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.001 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds