Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00258 * 2 1 4 4 N 1.46896 * 109.47697 * 234.99783 * 3 2 1 5 5 C 1.46896 * 111.00606 * 174.83533 * 4 3 2 6 6 C 1.50700 * 109.47095 * 293.95729 * 5 4 3 7 7 H 1.07999 * 120.00408 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00229 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99836 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00404 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47082 * 59.99709 * 10 8 6 12 12 H 1.48501 * 109.47158 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46848 * 300.00097 * 10 8 6 14 14 C 1.39667 * 111.00105 * 298.79650 * 4 3 2 15 15 C 1.38934 * 120.07201 * 305.69526 * 14 4 3 16 16 C 1.38079 * 119.92918 * 180.02562 * 15 14 4 17 17 C 1.38310 * 120.07260 * 0.02562 * 16 15 14 18 18 N 1.48003 * 119.92677 * 180.02562 * 17 16 15 19 19 O 1.21806 * 119.99941 * 0.02562 * 18 17 16 20 20 O 1.21804 * 120.00225 * 179.97438 * 18 17 16 21 21 C 1.38269 * 120.14823 * 359.97438 * 17 16 15 22 22 C 1.38123 * 120.07639 * 359.72382 * 21 17 16 23 23 S 1.76199 * 120.04139 * 180.27327 * 22 21 17 24 24 C 1.81403 * 104.44860 * 115.94959 * 23 22 21 25 25 O 1.42095 * 104.27997 * 232.02267 * 23 22 21 26 26 O 1.42101 * 104.27409 * 359.88206 * 23 22 21 27 27 H 1.07997 * 119.99724 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99796 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00520 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46688 * 355.00225 * 3 2 1 31 31 H 1.09002 * 109.47314 * 114.99759 * 3 2 1 32 32 H 1.09006 * 109.46854 * 53.95109 * 5 4 3 33 33 H 1.08994 * 109.47515 * 173.95298 * 5 4 3 34 34 H 0.96992 * 119.99930 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.03600 * 0.02724 * 15 14 4 36 36 H 1.07998 * 119.96926 * 180.02562 * 16 15 14 37 37 H 1.08001 * 119.96087 * 180.02562 * 21 17 16 38 38 H 1.08999 * 109.47011 * 66.67998 * 24 23 22 39 39 H 1.09000 * 109.47347 * 186.68231 * 24 23 22 40 40 H 1.09003 * 109.47353 * 306.68625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3320 -1.1344 5 6 3.6609 2.6379 -1.2389 6 6 2.6428 3.6932 -1.5867 7 1 1.6059 3.4209 -1.7176 8 6 3.0350 5.0063 -1.7380 9 7 4.2978 5.3379 -1.5791 10 14 1.7730 6.3145 -2.1685 11 1 0.7357 6.3698 -1.1073 12 1 2.4448 7.6346 -2.2742 13 1 1.1353 5.9787 -3.4669 14 6 3.9328 0.3003 -1.0371 15 6 4.6982 0.1611 0.1140 16 6 5.6234 -0.8596 0.2069 17 6 5.7890 -1.7427 -0.8446 18 7 6.7813 -2.8360 -0.7414 19 8 7.4506 -2.9575 0.2690 20 8 6.9280 -3.6147 -1.6664 21 6 5.0290 -1.6071 -1.9917 22 6 4.0973 -0.5920 -2.0887 23 16 3.1241 -0.4244 -3.5479 24 6 1.4223 -0.7197 -2.9935 25 8 3.2957 0.9335 -3.9296 26 8 3.5658 -1.4827 -4.3871 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 -0.0895 31 1 2.6213 1.4026 0.9314 32 1 4.1288 2.8847 -0.2858 33 1 4.4223 2.5969 -2.0176 34 1 4.5738 6.2615 -1.6858 35 1 4.5696 0.8506 0.9354 36 1 6.2184 -0.9687 1.1016 37 1 5.1605 -2.2986 -2.8108 38 1 1.1121 0.0859 -2.3279 39 1 0.7590 -0.7525 -3.8578 40 1 1.3731 -1.6697 -2.4614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295712623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -1.618453 kcal Electronic energy + Delta-G solvation = -28469.087912 eV Core-core repulsion = 24381.309059 eV Total energy + Delta-G solvation = -4087.778853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19845 -40.25598 -37.36806 -36.63302 -36.56638 -35.63609 -33.75995 -32.80019 -31.85450 -30.76112 -29.27895 -27.50747 -26.51968 -24.78334 -23.75715 -22.81276 -21.11291 -20.00591 -19.83407 -18.73307 -18.38393 -17.55397 -16.98934 -16.50881 -16.43149 -16.00751 -15.92791 -15.39811 -15.06100 -14.87267 -14.51272 -14.12571 -13.68249 -13.18431 -13.12242 -12.96052 -12.80953 -12.64671 -12.34217 -12.12605 -11.81558 -11.67429 -11.58636 -11.48116 -11.29910 -11.15902 -11.00620 -10.98954 -10.90291 -10.73828 -10.64120 -10.24066 -9.87420 -9.79192 -9.38831 -9.26534 -8.63740 -8.13802 -6.19747 -4.22160 -0.22088 0.21468 0.54219 1.25106 1.36689 2.16989 2.87057 3.00681 3.23369 3.29703 3.31424 3.93243 3.97019 4.23947 4.35690 4.36121 4.49115 4.73086 4.83003 4.87459 4.94004 5.10616 5.18468 5.19317 5.27166 5.37498 5.45729 5.57710 5.75156 5.80019 5.87296 5.99980 6.09623 6.36652 6.52387 6.71113 6.73372 6.84313 7.38109 7.53569 7.62873 7.83424 8.12503 8.79626 9.41662 10.91375 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004367 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.086526 B = 6410.846669 C = 6830.255952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.164 4.164 3 C 0.080 3.920 4 N -0.522 5.522 5 C 0.204 3.796 6 C -0.509 4.509 7 H 0.067 0.933 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.267 3.733 15 C -0.171 4.171 16 C 0.001 3.999 17 C -0.086 4.086 18 N 0.036 4.964 19 O -0.168 6.168 20 O -0.162 6.162 21 C 0.049 3.951 22 C -0.656 4.656 23 S 2.505 3.495 24 C -0.646 4.646 25 O -0.888 6.888 26 O -0.954 6.954 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.005 0.995 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -12.510 3.804 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.183 4.183 3 C -0.046 4.046 4 N -0.245 5.245 5 C 0.084 3.916 6 C -0.547 4.547 7 H 0.086 0.914 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.170 3.830 15 C -0.192 4.192 16 C -0.019 4.019 17 C -0.170 4.170 18 N 0.554 4.446 19 O -0.382 6.382 20 O -0.378 6.378 21 C 0.029 3.971 22 C -0.741 4.741 23 S 2.681 3.319 24 C -0.797 4.797 25 O -0.885 6.885 26 O -0.951 6.951 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.778 -11.642 2.535 13.242 hybrid contribution 0.128 0.394 1.475 1.532 sum -5.650 -11.248 4.010 13.210 Atomic orbital electron populations 1.23883 0.95679 1.02137 0.99961 1.23105 0.96479 0.98288 1.00395 1.21468 0.95611 0.96328 0.91163 1.60450 1.16016 1.05694 1.42305 1.19977 0.95128 0.79444 0.97075 1.20880 0.94537 0.90913 1.48413 0.91445 1.24937 0.95479 0.98642 0.95115 1.69924 1.15334 1.18861 1.49188 0.86505 0.81016 0.80395 0.79194 1.20249 1.21281 1.19886 1.19164 0.86447 0.88076 0.89279 1.21978 0.97106 0.99158 1.01001 1.21125 0.94135 0.89899 0.96709 1.21070 1.00007 0.95578 1.00330 1.43522 1.00207 1.00966 0.99934 1.94519 1.44368 1.78749 1.20585 1.94549 1.72798 1.39010 1.31439 1.20732 0.87685 0.93554 0.95163 1.30894 1.16727 1.03924 1.22522 1.05333 0.77694 0.75272 0.73637 1.30309 1.22934 1.12567 1.13863 1.93733 1.84089 1.31969 1.78738 1.93552 1.80449 1.58363 1.62750 0.88533 0.87813 0.88092 0.87031 0.93210 0.97724 0.93290 0.92552 0.82828 0.82695 0.81083 0.82921 0.85247 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 13.72 29.02 0.40 -1.34 16 2 C -0.16 -1.83 6.70 -36.03 -0.24 -2.07 16 3 C 0.08 1.14 4.95 -4.98 -0.02 1.11 16 4 N -0.52 -8.94 2.39 -173.84 -0.42 -9.36 16 5 C 0.20 4.61 4.38 -4.98 -0.02 4.59 16 6 C -0.51 -12.67 8.44 -34.44 -0.29 -12.97 16 7 H 0.07 1.60 7.13 -52.49 -0.37 1.23 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 10 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 14 C 0.27 4.10 3.50 -83.79 -0.29 3.81 16 15 C -0.17 -2.29 8.79 -39.38 -0.35 -2.64 16 16 C 0.00 0.01 9.55 -39.61 -0.38 -0.36 16 17 C -0.09 -1.21 6.85 -79.92 -0.55 -1.76 16 18 N 0.04 0.54 4.45 33.98 0.15 0.69 16 19 O -0.17 -2.56 18.44 -29.46 -0.54 -3.10 16 20 O -0.16 -2.57 18.44 -29.46 -0.54 -3.11 16 21 C 0.05 0.69 9.00 -39.61 -0.36 0.34 16 22 C -0.66 -9.70 5.59 -39.38 -0.22 -9.92 16 23 S 2.50 37.16 5.35 -107.50 -0.58 36.58 16 24 C -0.65 -6.83 9.95 101.05 1.01 -5.82 16 25 O -0.89 -17.52 17.11 -57.54 -0.98 -18.50 16 26 O -0.95 -15.27 16.74 -57.54 -0.96 -16.23 16 27 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 29 H 0.10 1.03 7.64 -52.48 -0.40 0.63 16 30 H 0.11 1.73 6.38 -51.93 -0.33 1.40 16 31 H 0.05 0.67 6.80 -51.93 -0.35 0.32 16 32 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 33 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.15 1.87 7.08 -52.48 -0.37 1.50 16 36 H 0.16 1.60 7.60 -52.49 -0.40 1.20 16 37 H 0.17 2.29 6.76 -52.49 -0.35 1.93 16 38 H 0.15 1.78 4.78 -51.92 -0.25 1.53 16 39 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.12 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -31.79 354.70 -8.71 -40.50 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.48 Total: 1.70 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -1.41 Total: -25.54 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.47 Total: -32.87 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -3.03 Total: -40.95 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 37.16 SS G_CDS: -0.58 Total: 36.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.79 -8.71 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295712623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.879 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds