Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00258 * 2 1 4 4 N 1.46896 * 109.47697 * 234.99783 * 3 2 1 5 5 C 1.46896 * 111.00606 * 174.83533 * 4 3 2 6 6 C 1.50700 * 109.47095 * 293.95729 * 5 4 3 7 7 H 1.07999 * 120.00408 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00229 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99836 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00404 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47082 * 59.99709 * 10 8 6 12 12 H 1.48501 * 109.47158 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46848 * 300.00097 * 10 8 6 14 14 C 1.39667 * 111.00105 * 298.79650 * 4 3 2 15 15 C 1.38934 * 120.07201 * 305.69526 * 14 4 3 16 16 C 1.38079 * 119.92918 * 180.02562 * 15 14 4 17 17 C 1.38310 * 120.07260 * 0.02562 * 16 15 14 18 18 N 1.48003 * 119.92677 * 180.02562 * 17 16 15 19 19 O 1.21806 * 119.99941 * 0.02562 * 18 17 16 20 20 O 1.21804 * 120.00225 * 179.97438 * 18 17 16 21 21 C 1.38269 * 120.14823 * 359.97438 * 17 16 15 22 22 C 1.38123 * 120.07639 * 359.72382 * 21 17 16 23 23 S 1.76199 * 120.04139 * 180.27327 * 22 21 17 24 24 C 1.81403 * 104.44860 * 115.94959 * 23 22 21 25 25 O 1.42095 * 104.27997 * 232.02267 * 23 22 21 26 26 O 1.42101 * 104.27409 * 359.88206 * 23 22 21 27 27 H 1.07997 * 119.99724 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99796 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00520 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46688 * 355.00225 * 3 2 1 31 31 H 1.09002 * 109.47314 * 114.99759 * 3 2 1 32 32 H 1.09006 * 109.46854 * 53.95109 * 5 4 3 33 33 H 1.08994 * 109.47515 * 173.95298 * 5 4 3 34 34 H 0.96992 * 119.99930 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.03600 * 0.02724 * 15 14 4 36 36 H 1.07998 * 119.96926 * 180.02562 * 16 15 14 37 37 H 1.08001 * 119.96087 * 180.02562 * 21 17 16 38 38 H 1.08999 * 109.47011 * 66.67998 * 24 23 22 39 39 H 1.09000 * 109.47347 * 186.68231 * 24 23 22 40 40 H 1.09003 * 109.47353 * 306.68625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3320 -1.1344 5 6 3.6609 2.6379 -1.2389 6 6 2.6428 3.6932 -1.5867 7 1 1.6059 3.4209 -1.7176 8 6 3.0350 5.0063 -1.7380 9 7 4.2978 5.3379 -1.5791 10 14 1.7730 6.3145 -2.1685 11 1 0.7357 6.3698 -1.1073 12 1 2.4448 7.6346 -2.2742 13 1 1.1353 5.9787 -3.4669 14 6 3.9328 0.3003 -1.0371 15 6 4.6982 0.1611 0.1140 16 6 5.6234 -0.8596 0.2069 17 6 5.7890 -1.7427 -0.8446 18 7 6.7813 -2.8360 -0.7414 19 8 7.4506 -2.9575 0.2690 20 8 6.9280 -3.6147 -1.6664 21 6 5.0290 -1.6071 -1.9917 22 6 4.0973 -0.5920 -2.0887 23 16 3.1241 -0.4244 -3.5479 24 6 1.4223 -0.7197 -2.9935 25 8 3.2957 0.9335 -3.9296 26 8 3.5658 -1.4827 -4.3871 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 -0.0895 31 1 2.6213 1.4026 0.9314 32 1 4.1288 2.8847 -0.2858 33 1 4.4223 2.5969 -2.0176 34 1 4.5738 6.2615 -1.6858 35 1 4.5696 0.8506 0.9354 36 1 6.2184 -0.9687 1.1016 37 1 5.1605 -2.2986 -2.8108 38 1 1.1121 0.0859 -2.3279 39 1 0.7590 -0.7525 -3.8578 40 1 1.3731 -1.6697 -2.4614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295712623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -21.989322 kcal Electronic energy + Delta-G solvation = -28469.971259 eV Core-core repulsion = 24381.309059 eV Total energy + Delta-G solvation = -4088.662200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.38972 -41.45310 -38.59733 -37.86867 -37.77912 -36.92468 -35.06326 -34.34325 -32.98235 -32.06546 -30.20241 -29.17502 -27.64245 -26.18190 -24.87866 -24.30119 -22.46538 -21.17778 -20.75031 -19.92675 -19.56750 -18.74819 -18.61673 -17.75647 -17.57841 -17.37874 -17.11474 -16.80438 -16.37100 -16.01131 -15.72297 -15.50555 -14.78342 -14.34019 -14.27698 -14.10328 -13.91815 -13.82586 -13.63057 -13.49195 -13.09009 -12.94670 -12.90910 -12.79380 -12.75059 -12.56013 -12.48481 -12.38154 -12.16869 -12.05179 -11.83405 -11.78864 -11.48385 -10.96013 -10.64095 -10.55091 -10.31720 -9.51689 -8.19223 -6.26506 -1.40458 -0.87926 -0.59482 0.05933 0.19451 1.34487 1.44073 1.48372 1.54178 1.74216 1.86928 2.41134 2.77651 2.84423 3.13745 3.17541 3.26928 3.43825 3.65977 3.75786 3.88512 4.11005 4.14251 4.20975 4.25320 4.37568 4.38996 4.51318 4.65404 4.82180 4.89264 5.00186 5.03314 5.09433 5.19347 5.23698 5.61079 5.71719 5.87576 5.96384 5.99401 6.36020 6.40585 6.84066 7.41331 8.92440 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004367 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.086526 B = 6410.846669 C = 6830.255952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.178 4.178 3 C 0.078 3.922 4 N -0.521 5.521 5 C 0.223 3.777 6 C -0.511 4.511 7 H 0.076 0.924 8 C 0.004 3.996 9 N -0.936 5.936 10 Si 0.963 3.037 11 H -0.258 1.258 12 H -0.291 1.291 13 H -0.273 1.273 14 C 0.250 3.750 15 C -0.168 4.168 16 C 0.015 3.985 17 C -0.088 4.088 18 N 0.036 4.964 19 O -0.158 6.158 20 O -0.184 6.184 21 C 0.046 3.954 22 C -0.654 4.654 23 S 2.496 3.504 24 C -0.621 4.621 25 O -0.951 6.951 26 O -0.975 6.975 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.054 0.946 32 H -0.009 1.009 33 H 0.004 0.996 34 H 0.262 0.738 35 H 0.167 0.833 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -14.019 5.124 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C -0.047 4.047 4 N -0.244 5.244 5 C 0.100 3.900 6 C -0.549 4.549 7 H 0.094 0.906 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.788 3.212 11 H -0.183 1.183 12 H -0.217 1.217 13 H -0.198 1.198 14 C 0.154 3.846 15 C -0.189 4.189 16 C -0.005 4.005 17 C -0.173 4.173 18 N 0.553 4.447 19 O -0.376 6.376 20 O -0.395 6.395 21 C 0.026 3.974 22 C -0.740 4.740 23 S 2.677 3.323 24 C -0.776 4.776 25 O -0.948 6.948 26 O -0.972 6.972 27 H 0.142 0.858 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.009 0.991 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.184 0.816 36 H 0.201 0.799 37 H 0.193 0.807 38 H 0.166 0.834 39 H 0.178 0.822 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.028 -13.194 3.810 15.907 hybrid contribution 0.789 0.758 1.139 1.579 sum -7.239 -12.436 4.949 15.217 Atomic orbital electron populations 1.24121 0.95120 1.03375 0.97056 1.22914 0.96813 0.96929 1.02940 1.21507 0.94956 0.98001 0.90237 1.60136 1.16348 1.03631 1.44238 1.19434 0.93830 0.82130 0.94610 1.21303 0.95368 0.91491 1.46726 0.90581 1.25812 0.97127 1.01105 0.95390 1.70063 1.17342 1.19030 1.51196 0.85533 0.79002 0.77458 0.79243 1.18276 1.21702 1.19835 1.19192 0.87124 0.88008 0.90296 1.22087 0.96756 0.99439 1.00612 1.21369 0.93453 0.88559 0.97083 1.21185 0.99737 0.95534 1.00796 1.43634 1.00263 1.01055 0.99797 1.94504 1.44147 1.78548 1.20405 1.94559 1.73471 1.39702 1.31723 1.20790 0.87548 0.93568 0.95500 1.30779 1.17074 1.04092 1.22012 1.05317 0.79689 0.73708 0.73627 1.30135 1.17798 1.14313 1.15318 1.93673 1.85926 1.34922 1.80270 1.93516 1.81868 1.57938 1.63857 0.85760 0.88058 0.86676 0.88668 0.92792 0.99141 0.97744 0.92878 0.81601 0.79928 0.80672 0.83364 0.82242 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 13.72 67.78 0.93 -1.55 16 2 C -0.18 -3.44 6.70 25.65 0.17 -3.27 16 3 C 0.08 2.14 4.95 85.56 0.42 2.56 16 4 N -0.52 -17.87 2.39 -703.92 -1.69 -19.56 16 5 C 0.22 10.43 4.38 85.56 0.37 10.80 16 6 C -0.51 -25.93 8.44 25.60 0.22 -25.71 16 7 H 0.08 3.62 7.13 -2.91 -0.02 3.60 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.94 -53.98 13.29 21.45 0.28 -53.69 16 10 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 12 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 C 0.25 7.57 3.50 38.22 0.13 7.70 16 15 C -0.17 -4.30 8.79 22.40 0.20 -4.10 16 16 C 0.01 0.34 9.55 22.25 0.21 0.56 16 17 C -0.09 -2.37 6.85 36.40 0.25 -2.12 16 18 N 0.04 1.04 4.45 -46.41 -0.21 0.83 16 19 O -0.16 -4.51 18.44 18.88 0.35 -4.16 16 20 O -0.18 -5.70 18.44 18.88 0.35 -5.35 16 21 C 0.05 1.28 9.00 22.25 0.20 1.48 16 22 C -0.65 -19.10 5.59 22.40 0.13 -18.98 16 23 S 2.50 73.63 5.35 -56.49 -0.30 73.33 16 24 C -0.62 -11.21 9.95 113.37 1.13 -10.08 16 25 O -0.95 -39.12 17.11 -127.65 -2.18 -41.31 16 26 O -0.97 -31.14 16.74 -127.65 -2.14 -33.28 16 27 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.10 1.65 7.84 -2.91 -0.02 1.63 16 29 H 0.12 1.93 7.64 -2.91 -0.02 1.91 16 30 H 0.10 2.89 6.38 -2.38 -0.02 2.88 16 31 H 0.05 1.40 6.80 -2.39 -0.02 1.39 16 32 H -0.01 -0.44 8.01 -2.38 -0.02 -0.46 16 33 H 0.00 0.25 8.06 -2.39 -0.02 0.23 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.17 3.83 7.08 -2.91 -0.02 3.81 16 36 H 0.18 3.21 7.60 -2.91 -0.02 3.18 16 37 H 0.18 4.65 6.76 -2.91 -0.02 4.63 16 38 H 0.15 3.03 4.78 -2.39 -0.01 3.02 16 39 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.96 354.70 2.39 -69.57 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.08 Total: 11.80 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 4.82 Total: -42.05 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.61 Total: -72.42 kcal Atomic # 8 Polarization: -80.47 SS G_CDS: -3.62 Total: -84.10 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 73.63 SS G_CDS: -0.30 Total: 73.33 kcal Total: -71.96 2.39 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295712623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.581 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds