Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 110.54089 * 2 1 4 4 O 1.42099 * 110.54314 * 223.25781 * 2 1 3 5 5 N 1.65598 * 104.45016 * 111.62786 * 2 1 3 6 6 C 1.39042 * 119.99913 * 61.63606 * 5 2 1 7 7 C 1.39230 * 119.92821 * 254.48500 * 6 5 2 8 8 C 1.37607 * 120.06583 * 179.76530 * 7 6 5 9 9 C 1.39793 * 119.93277 * 0.48712 * 8 7 6 10 10 C 1.47525 * 120.06997 * 179.78602 * 9 8 7 11 11 O 1.21593 * 119.99931 * 171.84086 * 10 9 8 12 12 N 1.34779 * 119.99865 * 351.84074 * 10 9 8 13 13 C 1.47068 * 136.05668 * 2.68805 * 12 10 9 14 14 C 1.53240 * 88.08144 * 207.20160 * 13 12 10 15 15 O 1.42895 * 114.01282 * 87.71709 * 14 13 12 16 16 C 1.50695 * 114.50523 * 220.45569 * 14 13 12 17 17 H 1.08004 * 119.99841 * 99.41704 * 16 14 13 18 18 C 1.37874 * 120.00531 * 279.42191 * 16 14 13 19 19 N 1.31516 * 119.99675 * 5.36375 * 18 16 14 20 20 Si 1.86795 * 120.00564 * 185.36681 * 18 16 14 21 21 H 1.48500 * 109.47248 * 94.99184 * 20 18 16 22 22 H 1.48491 * 109.47400 * 214.99718 * 20 18 16 23 23 H 1.48501 * 109.46714 * 334.99936 * 20 18 16 24 24 C 1.47065 * 136.05732 * 183.05589 * 12 10 9 25 25 C 1.39795 * 119.86211 * 359.76553 * 9 8 7 26 26 C 1.37612 * 119.93042 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.46802 * 313.34078 * 1 2 3 28 28 H 1.09000 * 109.47095 * 73.34324 * 1 2 3 29 29 H 1.09000 * 109.46865 * 193.33669 * 1 2 3 30 30 H 0.96998 * 119.99608 * 241.63676 * 5 2 1 31 31 H 1.07995 * 119.96202 * 0.02562 * 7 6 5 32 32 H 1.08007 * 120.03144 * 180.25656 * 8 7 6 33 33 H 1.08997 * 113.46872 * 321.93967 * 13 12 10 34 34 H 1.09002 * 113.46639 * 92.37344 * 13 12 10 35 35 H 0.96707 * 114.00219 * 91.35811 * 15 14 13 36 36 H 0.96999 * 119.99958 * 179.97438 * 19 18 16 37 37 H 1.08999 * 113.46577 * 267.62927 * 24 12 10 38 38 H 1.09003 * 113.46298 * 38.06494 * 24 12 10 39 39 H 1.07998 * 120.03349 * 180.02562 * 25 9 8 40 40 H 1.08001 * 119.96432 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9119 5 7 2.2273 -0.5910 1.4907 6 6 1.8468 -1.8768 1.8587 7 6 0.8100 -2.0605 2.7696 8 6 0.4279 -3.3317 3.1321 9 6 1.0886 -4.4392 2.5925 10 6 0.6846 -5.8034 2.9826 11 8 1.1549 -6.7650 2.4059 12 7 -0.2057 -5.9837 3.9782 13 6 -1.0075 -5.1141 4.8522 14 6 -0.9849 -6.2326 5.8995 15 8 0.1454 -6.1888 6.7727 16 6 -2.2902 -6.4365 6.6245 17 1 -2.9573 -7.2304 6.3225 18 6 -2.6329 -5.6096 7.6731 19 7 -1.8730 -4.5790 7.9733 20 14 -4.1764 -5.9530 8.6676 21 1 -3.8228 -6.7458 9.8725 22 1 -4.7931 -4.6680 9.0840 23 1 -5.1403 -6.7185 7.8369 24 6 -0.7982 -7.1365 4.6731 25 6 2.1328 -4.2513 1.6821 26 6 2.5074 -2.9776 1.3203 27 1 -0.3633 0.7053 0.7474 28 1 -0.3633 0.2946 -0.9845 29 1 -0.3633 -1.0000 0.2371 30 1 2.7347 -0.0402 2.1071 31 1 0.3024 -1.2044 3.1888 32 1 -0.3792 -3.4737 3.8356 33 1 -0.4815 -4.2137 5.1693 34 1 -2.0034 -4.9054 4.4613 35 1 -0.0019 -5.6798 7.5816 36 1 -2.1143 -3.9971 8.7109 37 1 -1.7377 -7.4720 4.2340 38 1 -0.0944 -7.9523 4.8382 39 1 2.6449 -5.1050 1.2633 40 1 3.3137 -2.8318 0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331899047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = -71.742454 kcal Electronic energy + Delta-G solvation = -27172.676967 eV Core-core repulsion = 23081.857309 eV Total energy + Delta-G solvation = -4090.819658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27528 -39.08730 -37.49581 -37.31934 -36.29842 -35.05488 -34.15830 -32.36998 -31.21915 -30.01972 -29.80221 -28.24782 -25.55984 -25.39464 -23.15241 -22.55076 -20.43661 -19.86589 -18.92237 -18.15960 -17.90277 -17.62940 -16.75657 -16.52650 -16.06115 -15.62638 -15.29441 -14.92880 -14.69074 -14.44751 -14.18297 -13.74913 -13.57736 -13.52723 -13.45707 -13.24052 -12.78126 -12.59907 -12.48040 -12.44268 -12.31184 -12.00532 -11.96008 -11.81799 -11.66391 -11.33141 -11.13991 -10.95838 -10.57564 -10.36319 -10.18731 -9.76531 -9.25363 -9.09544 -8.94272 -8.83667 -8.43578 -7.96812 -6.49136 -4.59841 -0.17200 0.76672 1.30981 2.28377 3.01166 3.08582 3.17829 3.19869 3.40407 3.41843 3.86685 3.92822 4.11338 4.39656 4.62113 4.70708 4.78579 4.84255 4.86681 4.98655 5.29442 5.33190 5.38459 5.42910 5.71778 5.80656 5.92975 6.03964 6.15055 6.22392 6.28185 6.36844 6.38866 6.52749 6.57102 6.61813 6.88729 6.98894 7.52494 7.67976 8.35789 8.45050 8.63081 9.12145 9.21688 10.57164 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002771 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.146141 B =10102.177846 C =11158.863945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 2.609 3.391 3 O -0.958 6.958 4 O -0.948 6.948 5 N -1.063 6.063 6 C 0.129 3.871 7 C -0.126 4.126 8 C -0.093 4.093 9 C -0.107 4.107 10 C 0.574 3.426 11 O -0.559 6.559 12 N -0.628 5.628 13 C 0.067 3.933 14 C 0.241 3.759 15 O -0.567 6.567 16 C -0.538 4.538 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.108 3.892 25 C -0.057 4.057 26 C -0.114 4.114 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.425 0.575 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.389 0.611 36 H 0.272 0.728 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 10.550 -10.061 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.703 3.297 3 O -0.948 6.948 4 O -0.938 6.938 5 N -0.818 5.818 6 C 0.034 3.966 7 C -0.147 4.147 8 C -0.111 4.111 9 C -0.110 4.110 10 C 0.364 3.636 11 O -0.440 6.440 12 N -0.360 5.360 13 C -0.055 4.055 14 C 0.199 3.801 15 O -0.376 6.376 16 C -0.576 4.576 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.531 5.531 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.014 4.014 25 C -0.077 4.077 26 C -0.135 4.135 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.159 0.841 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.484 10.081 -11.685 15.821 hybrid contribution -1.532 0.562 1.621 2.300 sum 1.952 10.643 -10.064 14.777 Atomic orbital electron populations 1.30465 1.27550 1.12253 1.11727 1.05034 0.77821 0.73770 0.73061 1.93627 1.78260 1.37493 1.85468 1.93635 1.76999 1.61526 1.61632 1.53025 1.69779 1.21398 1.37578 1.17421 0.96150 0.83661 0.99369 1.21394 0.97122 0.97910 0.98228 1.22150 0.99873 0.91263 0.97848 1.20195 0.98262 0.93485 0.99085 1.17626 0.79289 0.88251 0.78403 1.90730 1.56972 1.42287 1.54000 1.49617 1.39664 1.13596 1.33092 1.24307 0.93370 0.97945 0.89874 1.19483 0.85811 0.88954 0.85865 1.86086 1.38554 1.76796 1.36187 1.21382 1.03059 1.16700 1.16505 0.90840 1.25082 0.97533 0.93829 0.96611 1.69652 1.39041 1.14799 1.29653 0.86345 0.82140 0.77968 0.80266 1.20264 1.20950 1.19513 1.23369 0.96658 0.91097 0.90279 1.21222 0.94751 0.97298 0.94435 1.21490 0.99863 0.91433 1.00702 0.84988 0.85119 0.84925 0.73645 0.84792 0.82796 0.90542 0.89605 0.75836 0.91764 0.89371 0.91353 0.84084 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.80 10.76 101.05 1.09 -2.71 16 2 S 2.61 22.16 6.07 -107.50 -0.65 21.51 16 3 O -0.96 -10.72 18.08 -57.54 -1.04 -11.76 16 4 O -0.95 -11.43 16.93 -57.54 -0.97 -12.41 16 5 N -1.06 -8.74 5.57 32.41 0.18 -8.56 16 6 C 0.13 1.38 5.59 -83.86 -0.47 0.91 16 7 C -0.13 -1.38 9.95 -39.44 -0.39 -1.77 16 8 C -0.09 -1.29 9.15 -39.23 -0.36 -1.65 16 9 C -0.11 -1.73 5.88 -104.95 -0.62 -2.35 16 10 C 0.57 11.45 7.99 -12.47 -0.10 11.35 16 11 O -0.56 -12.58 17.14 5.28 0.09 -12.49 16 12 N -0.63 -12.60 3.69 -186.62 -0.69 -13.29 16 13 C 0.07 1.32 5.88 -8.64 -0.05 1.27 16 14 C 0.24 5.36 1.43 -91.39 -0.13 5.23 16 15 O -0.57 -13.60 13.56 -35.23 -0.48 -14.08 16 16 C -0.54 -12.58 8.67 -34.44 -0.30 -12.88 16 17 H 0.07 1.69 7.82 -52.48 -0.41 1.28 16 18 C 0.07 1.69 5.28 -17.82 -0.09 1.60 16 19 N -0.89 -21.03 11.59 55.43 0.64 -20.39 16 20 Si 0.91 18.35 29.54 -169.99 -5.02 13.33 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 C 0.11 2.23 8.04 -8.51 -0.07 2.16 16 25 C -0.06 -0.82 9.58 -39.23 -0.38 -1.20 16 26 C -0.11 -1.40 9.22 -39.45 -0.36 -1.76 16 27 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.13 0.77 8.07 -51.92 -0.42 0.35 16 30 H 0.42 2.71 8.91 -34.46 -0.31 2.40 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 2.23 3.87 -52.48 -0.20 2.03 16 33 H 0.08 1.48 6.18 -51.93 -0.32 1.16 16 34 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 35 H 0.39 9.36 6.90 45.56 0.31 9.67 16 36 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 37 H 0.09 1.66 8.10 -51.93 -0.42 1.23 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.14 2.00 7.66 -52.49 -0.40 1.60 16 40 H 0.14 1.58 7.75 -52.49 -0.41 1.17 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -31.82 355.06 -8.64 -40.46 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -3.82 Total: 14.11 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.23 Total: -1.80 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.14 Total: -42.23 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -2.40 Total: -50.73 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: 22.16 SS G_CDS: -0.65 Total: 21.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.82 -8.64 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331899047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.279 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds