Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 110.54089 * 2 1 4 4 O 1.42099 * 110.54314 * 223.25781 * 2 1 3 5 5 N 1.65598 * 104.45016 * 111.62786 * 2 1 3 6 6 C 1.39042 * 119.99913 * 61.63606 * 5 2 1 7 7 C 1.39230 * 119.92821 * 254.48500 * 6 5 2 8 8 C 1.37607 * 120.06583 * 179.76530 * 7 6 5 9 9 C 1.39793 * 119.93277 * 0.48712 * 8 7 6 10 10 C 1.47525 * 120.06997 * 179.78602 * 9 8 7 11 11 O 1.21593 * 119.99931 * 171.84086 * 10 9 8 12 12 N 1.34779 * 119.99865 * 351.84074 * 10 9 8 13 13 C 1.47068 * 136.05668 * 2.68805 * 12 10 9 14 14 C 1.53240 * 88.08144 * 207.20160 * 13 12 10 15 15 O 1.42895 * 114.01282 * 87.71709 * 14 13 12 16 16 C 1.50695 * 114.50523 * 220.45569 * 14 13 12 17 17 H 1.08004 * 119.99841 * 99.41704 * 16 14 13 18 18 C 1.37874 * 120.00531 * 279.42191 * 16 14 13 19 19 N 1.31516 * 119.99675 * 5.36375 * 18 16 14 20 20 Si 1.86795 * 120.00564 * 185.36681 * 18 16 14 21 21 H 1.48500 * 109.47248 * 94.99184 * 20 18 16 22 22 H 1.48491 * 109.47400 * 214.99718 * 20 18 16 23 23 H 1.48501 * 109.46714 * 334.99936 * 20 18 16 24 24 C 1.47065 * 136.05732 * 183.05589 * 12 10 9 25 25 C 1.39795 * 119.86211 * 359.76553 * 9 8 7 26 26 C 1.37612 * 119.93042 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.46802 * 313.34078 * 1 2 3 28 28 H 1.09000 * 109.47095 * 73.34324 * 1 2 3 29 29 H 1.09000 * 109.46865 * 193.33669 * 1 2 3 30 30 H 0.96998 * 119.99608 * 241.63676 * 5 2 1 31 31 H 1.07995 * 119.96202 * 0.02562 * 7 6 5 32 32 H 1.08007 * 120.03144 * 180.25656 * 8 7 6 33 33 H 1.08997 * 113.46872 * 321.93967 * 13 12 10 34 34 H 1.09002 * 113.46639 * 92.37344 * 13 12 10 35 35 H 0.96707 * 114.00219 * 91.35811 * 15 14 13 36 36 H 0.96999 * 119.99958 * 179.97438 * 19 18 16 37 37 H 1.08999 * 113.46577 * 267.62927 * 24 12 10 38 38 H 1.09003 * 113.46298 * 38.06494 * 24 12 10 39 39 H 1.07998 * 120.03349 * 180.02562 * 25 9 8 40 40 H 1.08001 * 119.96432 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9119 5 7 2.2273 -0.5910 1.4907 6 6 1.8468 -1.8768 1.8587 7 6 0.8100 -2.0605 2.7696 8 6 0.4279 -3.3317 3.1321 9 6 1.0886 -4.4392 2.5925 10 6 0.6846 -5.8034 2.9826 11 8 1.1549 -6.7650 2.4059 12 7 -0.2057 -5.9837 3.9782 13 6 -1.0075 -5.1141 4.8522 14 6 -0.9849 -6.2326 5.8995 15 8 0.1454 -6.1888 6.7727 16 6 -2.2902 -6.4365 6.6245 17 1 -2.9573 -7.2304 6.3225 18 6 -2.6329 -5.6096 7.6731 19 7 -1.8730 -4.5790 7.9733 20 14 -4.1764 -5.9530 8.6676 21 1 -3.8228 -6.7458 9.8725 22 1 -4.7931 -4.6680 9.0840 23 1 -5.1403 -6.7185 7.8369 24 6 -0.7982 -7.1365 4.6731 25 6 2.1328 -4.2513 1.6821 26 6 2.5074 -2.9776 1.3203 27 1 -0.3633 0.7053 0.7474 28 1 -0.3633 0.2946 -0.9845 29 1 -0.3633 -1.0000 0.2371 30 1 2.7347 -0.0402 2.1071 31 1 0.3024 -1.2044 3.1888 32 1 -0.3792 -3.4737 3.8356 33 1 -0.4815 -4.2137 5.1693 34 1 -2.0034 -4.9054 4.4613 35 1 -0.0019 -5.6798 7.5816 36 1 -2.1143 -3.9971 8.7109 37 1 -1.7377 -7.4720 4.2340 38 1 -0.0944 -7.9523 4.8382 39 1 2.6449 -5.1050 1.2633 40 1 3.3137 -2.8318 0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331899047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -97.704615 kcal Electronic energy + Delta-G solvation = -27173.802770 eV Core-core repulsion = 23081.857309 eV Total energy + Delta-G solvation = -4091.945461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67958 -40.32663 -38.98202 -38.17849 -37.09001 -36.06571 -35.85671 -34.17332 -32.27908 -31.26643 -30.29500 -29.66361 -27.22594 -26.96714 -24.30932 -23.61229 -21.94745 -20.61795 -20.40495 -19.35287 -18.93124 -18.74147 -18.17869 -17.54297 -17.22874 -16.95679 -16.49138 -16.35936 -16.11237 -15.80380 -15.42785 -15.07639 -14.63893 -14.53445 -14.30055 -14.04089 -14.02651 -13.93027 -13.87788 -13.55311 -13.43289 -13.25034 -13.13406 -13.00304 -12.81442 -12.73220 -12.47099 -12.22217 -12.11654 -11.96739 -11.40517 -11.03469 -10.93862 -10.70221 -10.15954 -10.07688 -9.93612 -9.55314 -8.24699 -6.40865 -0.87454 -0.28499 0.29828 1.48721 1.54345 1.58908 1.61682 1.71608 1.89685 2.43356 2.70123 2.78025 2.97436 3.23008 3.40975 3.70608 3.83777 3.84356 3.96659 4.10173 4.11764 4.21906 4.28694 4.35219 4.46053 4.62534 4.69447 4.80856 4.88053 4.92243 4.96370 5.05722 5.18747 5.23721 5.27376 5.37824 5.68641 5.74130 5.91291 6.06138 6.64967 6.80353 7.07004 7.32782 7.37154 8.81088 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002771 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.146141 B =10102.177846 C =11158.863945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.618 3.382 3 O -0.986 6.986 4 O -0.989 6.989 5 N -1.057 6.057 6 C 0.150 3.850 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.134 4.134 10 C 0.567 3.433 11 O -0.596 6.596 12 N -0.630 5.630 13 C 0.085 3.915 14 C 0.221 3.779 15 O -0.580 6.580 16 C -0.555 4.555 17 H 0.072 0.928 18 C 0.040 3.960 19 N -0.907 5.907 20 Si 0.963 3.037 21 H -0.282 1.282 22 H -0.281 1.281 23 H -0.269 1.269 24 C 0.105 3.895 25 C -0.062 4.062 26 C -0.117 4.117 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.436 0.564 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.386 0.614 36 H 0.275 0.725 37 H 0.106 0.894 38 H 0.054 0.946 39 H 0.133 0.867 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 12.903 -10.153 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.716 3.284 3 O -0.976 6.976 4 O -0.979 6.979 5 N -0.812 5.812 6 C 0.055 3.945 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.360 3.640 11 O -0.480 6.480 12 N -0.362 5.362 13 C -0.037 4.037 14 C 0.180 3.820 15 O -0.390 6.390 16 C -0.593 4.593 17 H 0.090 0.910 18 C -0.162 4.162 19 N -0.546 5.546 20 Si 0.788 3.212 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.017 4.017 25 C -0.082 4.082 26 C -0.138 4.138 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.277 0.723 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.150 0.850 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.120 12.452 -11.773 17.267 hybrid contribution -1.084 -0.107 1.613 1.946 sum 1.036 12.346 -10.159 16.022 Atomic orbital electron populations 1.30339 1.22969 1.13512 1.13998 1.04595 0.79209 0.72418 0.72207 1.93594 1.79909 1.38481 1.85644 1.93589 1.79022 1.62406 1.62904 1.52893 1.70272 1.20439 1.37637 1.17401 0.95051 0.84143 0.97939 1.21669 0.96533 0.97733 0.97270 1.22098 0.99619 0.91781 0.97720 1.19992 1.00340 0.91999 1.01438 1.18293 0.78435 0.89588 0.77701 1.90691 1.58132 1.43907 1.55262 1.49649 1.39922 1.13301 1.33296 1.24120 0.93940 0.97097 0.88564 1.19723 0.85136 0.90926 0.86193 1.86077 1.39592 1.76966 1.36374 1.21554 1.03448 1.16969 1.17340 0.90981 1.25649 0.99765 0.93649 0.97175 1.69705 1.39932 1.15098 1.29872 0.85467 0.79377 0.77661 0.78653 1.20787 1.20600 1.19317 1.23407 0.97194 0.90901 0.90211 1.21179 0.94545 0.98088 0.94387 1.21615 1.00205 0.91098 1.00857 0.82450 0.83180 0.84373 0.72319 0.81056 0.83308 0.90153 0.88294 0.76225 0.91545 0.87656 0.92761 0.84956 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.67 10.76 113.37 1.22 -3.45 16 2 S 2.62 38.23 6.07 -56.49 -0.34 37.89 16 3 O -0.99 -20.11 18.08 -127.65 -2.31 -22.42 16 4 O -0.99 -22.58 16.93 -127.65 -2.16 -24.74 16 5 N -1.06 -14.28 5.57 -51.38 -0.29 -14.56 16 6 C 0.15 2.80 5.59 38.47 0.22 3.02 16 7 C -0.11 -2.07 9.95 22.36 0.22 -1.84 16 8 C -0.09 -2.44 9.15 22.50 0.21 -2.24 16 9 C -0.13 -4.34 5.88 -20.08 -0.12 -4.46 16 10 C 0.57 23.11 7.99 86.69 0.69 23.80 16 11 O -0.60 -27.84 17.14 -4.01 -0.07 -27.91 16 12 N -0.63 -25.53 3.69 -863.08 -3.18 -28.71 16 13 C 0.08 3.28 5.88 83.09 0.49 3.77 16 14 C 0.22 9.91 1.43 -11.29 -0.02 9.89 16 15 O -0.58 -28.30 13.56 -148.98 -2.02 -30.32 16 16 C -0.56 -25.74 8.67 25.60 0.22 -25.51 16 17 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 18 C 0.04 1.81 5.28 84.65 0.45 2.25 16 19 N -0.91 -41.99 11.59 21.45 0.25 -41.74 16 20 Si 0.96 36.85 29.54 68.60 2.03 38.87 16 21 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 24 C 0.11 4.41 8.04 83.18 0.67 5.08 16 25 C -0.06 -1.79 9.58 22.50 0.22 -1.57 16 26 C -0.12 -2.72 9.22 22.36 0.21 -2.51 16 27 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.14 1.00 8.07 -2.39 -0.02 0.98 16 30 H 0.44 4.24 8.91 -96.75 -0.86 3.38 16 31 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.15 4.05 3.87 -2.91 -0.01 4.04 16 33 H 0.08 3.04 6.18 -2.39 -0.01 3.03 16 34 H 0.10 3.55 8.10 -2.39 -0.02 3.53 16 35 H 0.39 18.82 6.90 -74.05 -0.51 18.31 16 36 H 0.27 12.10 8.31 -92.71 -0.77 11.33 16 37 H 0.11 3.97 8.10 -2.39 -0.02 3.95 16 38 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.13 3.93 7.66 -2.91 -0.02 3.90 16 40 H 0.15 3.19 7.75 -2.91 -0.02 3.17 16 Total: -1.00 -69.09 355.06 -3.68 -72.77 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.26 Total: 34.65 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 4.67 Total: 6.22 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.22 Total: -85.02 kcal Atomic # 8 Polarization: -98.83 SS G_CDS: -6.56 Total: -105.39 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.34 Total: 37.89 kcal Total: -69.09 -3.68 -72.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331899047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.936 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds