Wall clock time and date at job start Sat Apr 11 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 110.54419 * 2 1 4 4 O 1.42094 * 110.54362 * 223.24411 * 2 1 3 5 5 N 1.65612 * 104.44724 * 111.62111 * 2 1 3 6 6 C 1.47423 * 125.64850 * 84.36269 * 5 2 1 7 7 C 1.54900 * 104.92886 * 204.05377 * 6 5 2 8 8 C 1.55277 * 101.52619 * 323.12559 * 7 6 5 9 9 C 1.47017 * 125.64703 * 264.33805 * 5 2 1 10 10 H 1.09005 * 109.88520 * 59.54727 * 9 5 2 11 11 C 1.53000 * 109.88510 * 298.53247 * 9 5 2 12 12 N 1.46497 * 109.47255 * 305.75737 * 11 9 5 13 13 S 1.65601 * 120.00031 * 164.16944 * 12 11 9 14 14 O 1.42100 * 104.27484 * 181.07235 * 13 12 11 15 15 O 1.42091 * 104.27866 * 308.92698 * 13 12 11 16 16 C 1.81402 * 104.44921 * 64.99973 * 13 12 11 17 17 C 1.53002 * 109.46879 * 179.97438 * 16 13 12 18 18 C 1.50703 * 109.46732 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00274 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99578 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99485 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47073 * 89.99942 * 22 20 18 24 24 H 1.48504 * 109.46687 * 209.99273 * 22 20 18 25 25 H 1.48497 * 109.46968 * 329.99225 * 22 20 18 26 26 H 1.09000 * 109.47288 * 308.38020 * 1 2 3 27 27 H 1.09000 * 109.46952 * 68.37444 * 1 2 3 28 28 H 1.08997 * 109.47382 * 188.38119 * 1 2 3 29 29 H 1.08998 * 110.36660 * 322.94910 * 6 5 2 30 30 H 1.08998 * 110.36602 * 85.15777 * 6 5 2 31 31 H 1.08995 * 111.00652 * 81.11843 * 7 6 5 32 32 H 1.09007 * 111.00436 * 204.97340 * 7 6 5 33 33 H 1.08996 * 110.62773 * 277.00558 * 8 7 6 34 34 H 1.09007 * 110.90354 * 153.84999 * 8 7 6 35 35 H 1.09008 * 109.46628 * 65.75461 * 11 9 5 36 36 H 1.08997 * 109.47407 * 185.75202 * 11 9 5 37 37 H 0.97004 * 119.99861 * 344.16749 * 12 11 9 38 38 H 1.08994 * 109.46963 * 300.00007 * 16 13 12 39 39 H 1.09007 * 109.46909 * 59.99957 * 16 13 12 40 40 H 1.08996 * 109.47185 * 299.99700 * 17 16 13 41 41 H 1.08998 * 109.46856 * 60.00310 * 17 16 13 42 42 H 0.97002 * 119.99853 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9116 5 7 2.2272 -0.5909 1.4909 6 6 2.3276 -2.0166 1.8524 7 6 2.1197 -2.0548 3.3869 8 6 2.8483 -0.7575 3.8311 9 6 2.5551 0.2194 2.6730 10 1 1.7098 0.8575 2.9312 11 6 3.7882 1.0794 2.3886 12 7 4.8863 0.2231 1.9336 13 16 6.2033 0.8930 1.1857 14 8 7.0299 -0.2188 0.8698 15 8 5.6484 1.7074 0.1621 16 6 6.9777 1.9187 2.4658 17 6 8.2217 2.5989 1.8907 18 6 8.8655 3.4506 2.9544 19 1 8.4306 3.5020 3.9416 20 6 10.0091 4.1651 2.6668 21 7 10.5384 4.1030 1.4645 22 14 10.8066 5.2214 3.9851 23 1 11.7997 4.4111 4.7349 24 1 11.4895 6.3760 3.3481 25 1 9.7645 5.7168 4.9199 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3634 -1.0166 0.1498 29 1 1.5495 -2.5911 1.3498 30 1 3.3124 -2.4052 1.5932 31 1 1.0601 -2.0127 3.6388 32 1 2.5886 -2.9370 3.8229 33 1 3.9199 -0.9323 3.9263 34 1 2.4357 -0.3808 4.7671 35 1 3.5515 1.8090 1.6141 36 1 4.0862 1.5995 3.2989 37 1 4.8421 -0.7362 2.0704 38 1 6.2704 2.6774 2.8006 39 1 7.2644 1.2914 3.3099 40 1 8.9289 1.8400 1.5562 41 1 7.9354 3.2261 1.0465 42 1 11.3431 4.6054 1.2624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338160380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:21 Heat of formation + Delta-G solvation = -139.920013 kcal Electronic energy + Delta-G solvation = -26961.560106 eV Core-core repulsion = 23003.227999 eV Total energy + Delta-G solvation = -3958.332107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39812 -37.25195 -36.41049 -36.01884 -35.26523 -34.50226 -33.82365 -31.29950 -31.09044 -29.89622 -29.73105 -25.53436 -25.11825 -22.34188 -21.58967 -21.37631 -19.02835 -18.91222 -17.88307 -17.51721 -16.86526 -16.37085 -16.17026 -15.70990 -15.46861 -15.24213 -14.57776 -14.48710 -14.36439 -13.94515 -13.72202 -13.57993 -13.50281 -13.40027 -13.25741 -12.70639 -12.45796 -12.14659 -12.06685 -11.80576 -11.67638 -11.55548 -11.51059 -11.39304 -11.32039 -11.25110 -11.13961 -11.04089 -10.94374 -10.88952 -10.33684 -10.31263 -9.70732 -9.43332 -9.27216 -8.88764 -8.45505 -6.07262 -4.12724 0.00053 0.93585 2.38379 3.29053 3.29692 3.35026 3.37922 3.74634 3.79349 4.07408 4.26525 4.36738 4.43131 4.46009 4.53515 4.67207 4.71920 4.84561 4.99449 5.07388 5.23140 5.27304 5.27736 5.37632 5.49377 5.50766 5.53387 5.64785 5.73429 5.78549 5.88042 5.93190 6.10048 6.20913 6.56998 7.23002 7.37594 7.44361 7.85517 8.23339 8.90636 9.51557 11.03838 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.003123 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.867667 B = 8962.767680 C = 9385.418224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.678 4.678 2 S 2.616 3.384 3 O -0.927 6.927 4 O -0.948 6.948 5 N -1.006 6.006 6 C 0.118 3.882 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.151 3.849 10 H 0.088 0.912 11 C 0.083 3.917 12 N -1.124 6.124 13 S 2.587 3.413 14 O -0.970 6.970 15 O -0.954 6.954 16 C -0.590 4.590 17 C 0.027 3.973 18 C -0.519 4.519 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.409 0.591 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.948 -12.326 5.505 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.708 3.292 3 O -0.917 6.917 4 O -0.938 6.938 5 N -0.844 5.844 6 C -0.007 4.007 7 C -0.170 4.170 8 C -0.168 4.168 9 C 0.044 3.956 10 H 0.106 0.894 11 C -0.045 4.045 12 N -0.882 5.882 13 S 2.683 3.317 14 O -0.960 6.960 15 O -0.944 6.944 16 C -0.723 4.723 17 C -0.012 4.012 18 C -0.559 4.559 19 H 0.079 0.921 20 C -0.146 4.146 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.243 0.757 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.039 -11.921 3.654 27.080 hybrid contribution -0.273 0.268 1.699 1.742 sum -24.313 -11.652 5.353 27.487 Atomic orbital electron populations 1.30647 1.29643 1.11105 1.11304 1.04969 0.77292 0.74592 0.72308 1.93664 1.76473 1.36765 1.84793 1.93623 1.77103 1.62178 1.60909 1.58737 1.83539 1.14258 1.27894 1.22019 1.02284 0.80720 0.95652 1.22813 1.01203 0.98401 0.94556 1.22770 1.02275 0.94577 0.97194 1.21526 0.96673 0.92607 0.84833 0.89387 1.22054 0.86623 0.93851 1.01934 1.55733 1.34823 1.17488 1.80152 1.05746 0.73480 0.75499 0.76926 1.93545 1.67891 1.51230 1.83381 1.93592 1.76438 1.70712 1.53610 1.30452 1.11942 1.13517 1.16424 1.18961 0.88665 0.96119 0.97451 1.21007 1.10020 1.27534 0.97292 0.92071 1.25076 0.96996 0.96796 0.95686 1.69960 1.21299 1.41760 1.19811 0.86471 0.79441 0.79901 0.81452 1.20528 1.21043 1.19780 0.85455 0.85544 0.85806 0.90871 0.90789 0.90691 0.89804 0.89664 0.89727 0.87017 0.90643 0.75707 0.86307 0.86282 0.94919 0.94764 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.73 10.99 101.05 1.11 -2.62 16 2 S 2.62 27.84 6.26 -107.50 -0.67 27.16 16 3 O -0.93 -13.51 15.09 -57.54 -0.87 -14.38 16 4 O -0.95 -13.73 17.69 -57.54 -1.02 -14.75 16 5 N -1.01 -8.56 2.98 -104.43 -0.31 -8.88 16 6 C 0.12 0.78 6.68 -2.53 -0.02 0.77 16 7 C -0.13 -0.57 7.10 -24.52 -0.17 -0.75 16 8 C -0.13 -0.71 6.19 -24.83 -0.15 -0.86 16 9 C 0.15 1.15 3.29 -66.96 -0.22 0.93 16 10 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 11 C 0.08 0.94 5.47 -4.04 -0.02 0.92 16 12 N -1.12 -15.47 5.32 -10.61 -0.06 -15.52 16 13 S 2.59 50.17 5.46 -107.50 -0.59 49.58 16 14 O -0.97 -21.54 18.08 -57.54 -1.04 -22.58 16 15 O -0.95 -21.91 17.49 -57.54 -1.01 -22.91 16 16 C -0.59 -11.66 6.01 37.16 0.22 -11.43 16 17 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.08 0.53 6.86 -51.93 -0.36 0.17 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 1.55 5.43 -51.92 -0.28 1.27 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.41 4.76 6.97 -34.47 -0.24 4.52 16 38 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 39 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -41.42 366.78 -10.44 -51.86 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.32 Total: 0.57 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 0.20 Total: -25.85 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.37 Total: -50.66 kcal Atomic # 8 Polarization: -70.69 SS G_CDS: -3.93 Total: -74.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 78.00 SS G_CDS: -1.26 Total: 76.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.42 -10.44 -51.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338160380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.059 kcal (2) G-P(sol) polarization free energy of solvation -41.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds