Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 110.54419 * 2 1 4 4 O 1.42094 * 110.54362 * 223.24411 * 2 1 3 5 5 N 1.65612 * 104.44724 * 111.62111 * 2 1 3 6 6 C 1.47423 * 125.64850 * 84.36269 * 5 2 1 7 7 C 1.54900 * 104.92886 * 204.05377 * 6 5 2 8 8 C 1.55277 * 101.52619 * 323.12559 * 7 6 5 9 9 C 1.47017 * 125.64703 * 264.33805 * 5 2 1 10 10 H 1.09005 * 109.88520 * 59.54727 * 9 5 2 11 11 C 1.53000 * 109.88510 * 298.53247 * 9 5 2 12 12 N 1.46497 * 109.47255 * 305.75737 * 11 9 5 13 13 S 1.65601 * 120.00031 * 164.16944 * 12 11 9 14 14 O 1.42100 * 104.27484 * 181.07235 * 13 12 11 15 15 O 1.42091 * 104.27866 * 308.92698 * 13 12 11 16 16 C 1.81402 * 104.44921 * 64.99973 * 13 12 11 17 17 C 1.53002 * 109.46879 * 179.97438 * 16 13 12 18 18 C 1.50703 * 109.46732 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00274 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99578 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99485 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47073 * 89.99942 * 22 20 18 24 24 H 1.48504 * 109.46687 * 209.99273 * 22 20 18 25 25 H 1.48497 * 109.46968 * 329.99225 * 22 20 18 26 26 H 1.09000 * 109.47288 * 308.38020 * 1 2 3 27 27 H 1.09000 * 109.46952 * 68.37444 * 1 2 3 28 28 H 1.08997 * 109.47382 * 188.38119 * 1 2 3 29 29 H 1.08998 * 110.36660 * 322.94910 * 6 5 2 30 30 H 1.08998 * 110.36602 * 85.15777 * 6 5 2 31 31 H 1.08995 * 111.00652 * 81.11843 * 7 6 5 32 32 H 1.09007 * 111.00436 * 204.97340 * 7 6 5 33 33 H 1.08996 * 110.62773 * 277.00558 * 8 7 6 34 34 H 1.09007 * 110.90354 * 153.84999 * 8 7 6 35 35 H 1.09008 * 109.46628 * 65.75461 * 11 9 5 36 36 H 1.08997 * 109.47407 * 185.75202 * 11 9 5 37 37 H 0.97004 * 119.99861 * 344.16749 * 12 11 9 38 38 H 1.08994 * 109.46963 * 300.00007 * 16 13 12 39 39 H 1.09007 * 109.46909 * 59.99957 * 16 13 12 40 40 H 1.08996 * 109.47185 * 299.99700 * 17 16 13 41 41 H 1.08998 * 109.46856 * 60.00310 * 17 16 13 42 42 H 0.97002 * 119.99853 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9116 5 7 2.2272 -0.5909 1.4909 6 6 2.3276 -2.0166 1.8524 7 6 2.1197 -2.0548 3.3869 8 6 2.8483 -0.7575 3.8311 9 6 2.5551 0.2194 2.6730 10 1 1.7098 0.8575 2.9312 11 6 3.7882 1.0794 2.3886 12 7 4.8863 0.2231 1.9336 13 16 6.2033 0.8930 1.1857 14 8 7.0299 -0.2188 0.8698 15 8 5.6484 1.7074 0.1621 16 6 6.9777 1.9187 2.4658 17 6 8.2217 2.5989 1.8907 18 6 8.8655 3.4506 2.9544 19 1 8.4306 3.5020 3.9416 20 6 10.0091 4.1651 2.6668 21 7 10.5384 4.1030 1.4645 22 14 10.8066 5.2214 3.9851 23 1 11.7997 4.4111 4.7349 24 1 11.4895 6.3760 3.3481 25 1 9.7645 5.7168 4.9199 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3634 -1.0166 0.1498 29 1 1.5495 -2.5911 1.3498 30 1 3.3124 -2.4052 1.5932 31 1 1.0601 -2.0127 3.6388 32 1 2.5886 -2.9370 3.8229 33 1 3.9199 -0.9323 3.9263 34 1 2.4357 -0.3808 4.7671 35 1 3.5515 1.8090 1.6141 36 1 4.0862 1.5995 3.2989 37 1 4.8421 -0.7362 2.0704 38 1 6.2704 2.6774 2.8006 39 1 7.2644 1.2914 3.3099 40 1 8.9289 1.8400 1.5562 41 1 7.9354 3.2261 1.0465 42 1 11.3431 4.6054 1.2624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338160380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -176.166629 kcal Electronic energy + Delta-G solvation = -26963.131877 eV Core-core repulsion = 23003.227999 eV Total energy + Delta-G solvation = -3959.903878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98933 -38.18767 -38.10722 -36.99112 -36.93386 -35.89540 -35.50933 -33.12746 -31.78246 -30.60021 -30.25134 -27.59266 -25.86877 -23.61373 -22.87516 -21.90797 -20.35849 -19.78232 -19.14812 -18.68189 -18.34932 -17.53491 -17.13560 -17.00124 -16.82534 -16.52414 -16.20736 -15.82569 -15.10864 -14.99524 -14.70524 -14.44633 -14.33291 -14.22404 -13.97510 -13.87796 -13.72978 -13.31734 -13.16589 -13.10068 -13.09143 -12.98671 -12.91805 -12.83355 -12.76034 -12.47385 -12.24508 -12.11961 -11.96310 -11.91824 -11.77717 -11.65412 -11.44280 -11.12547 -10.64577 -10.32548 -9.84631 -8.25107 -6.39963 -0.71958 -0.65965 1.41390 1.44230 1.55362 1.68545 1.92025 2.39035 2.83102 3.05661 3.08125 3.09952 3.30343 3.60767 3.78772 3.94403 4.03595 4.07039 4.14476 4.20107 4.27685 4.48879 4.54899 4.65724 4.72648 4.77838 4.79150 4.89022 5.06711 5.10688 5.16421 5.25820 5.26129 5.27410 5.35384 5.55761 5.58637 5.68534 6.05459 6.18974 6.73982 7.30329 8.87558 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.003123 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.867667 B = 8962.767680 C = 9385.418224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.600 3.400 3 O -0.980 6.980 4 O -1.005 7.005 5 N -1.009 6.009 6 C 0.106 3.894 7 C -0.117 4.117 8 C -0.127 4.127 9 C 0.149 3.851 10 H 0.123 0.877 11 C 0.064 3.936 12 N -1.104 6.104 13 S 2.602 3.398 14 O -1.006 7.006 15 O -0.996 6.996 16 C -0.579 4.579 17 C 0.018 3.982 18 C -0.537 4.537 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.937 5.937 22 Si 0.979 3.021 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.254 1.254 26 H 0.156 0.844 27 H 0.137 0.863 28 H 0.151 0.849 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.420 0.580 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.924 -12.672 9.214 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.699 3.301 3 O -0.971 6.971 4 O -0.995 6.995 5 N -0.848 5.848 6 C -0.019 4.019 7 C -0.156 4.156 8 C -0.166 4.166 9 C 0.042 3.958 10 H 0.141 0.859 11 C -0.063 4.063 12 N -0.867 5.867 13 S 2.699 3.301 14 O -0.996 6.996 15 O -0.986 6.986 16 C -0.712 4.712 17 C -0.021 4.021 18 C -0.576 4.576 19 H 0.099 0.901 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.802 3.198 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.178 1.178 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.169 0.831 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.257 0.743 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.972 -12.287 7.365 30.540 hybrid contribution 0.514 0.328 0.524 0.804 sum -26.458 -11.959 7.889 30.088 Atomic orbital electron populations 1.30323 1.22418 1.13771 1.13223 1.04934 0.79954 0.72914 0.72289 1.93606 1.79183 1.38765 1.85536 1.93549 1.79860 1.63036 1.63088 1.58508 1.83992 1.15176 1.27128 1.22247 1.01906 0.79796 0.97946 1.22798 1.02564 0.98147 0.92112 1.22817 1.02082 0.94533 0.97187 1.21778 0.95774 0.93126 0.85104 0.85925 1.22482 0.87521 0.94153 1.02149 1.55159 1.33643 1.18265 1.79614 1.04916 0.73848 0.74639 0.76712 1.93484 1.69656 1.52216 1.84245 1.93542 1.77321 1.71868 1.55869 1.30272 1.09626 1.14366 1.16960 1.18839 0.90984 0.95397 0.96842 1.21523 1.10349 1.27494 0.98248 0.90149 1.26199 0.97802 0.98377 0.98191 1.70126 1.22004 1.43083 1.22447 0.85244 0.78641 0.77649 0.78281 1.19520 1.21011 1.17793 0.82617 0.84413 0.83063 0.89086 0.92994 0.88422 0.88877 0.90697 0.87125 0.89794 0.87643 0.74254 0.83629 0.83382 0.97849 0.97911 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.83 10.99 113.37 1.25 -3.59 16 2 S 2.60 54.98 6.26 -56.49 -0.35 54.63 16 3 O -0.98 -29.81 15.09 -127.65 -1.93 -31.74 16 4 O -1.00 -30.64 17.69 -127.65 -2.26 -32.90 16 5 N -1.01 -15.62 2.98 -484.31 -1.44 -17.06 16 6 C 0.11 1.21 6.68 86.85 0.58 1.79 16 7 C -0.12 -0.58 7.10 32.03 0.23 -0.36 16 8 C -0.13 -0.91 6.19 31.82 0.20 -0.72 16 9 C 0.15 1.87 3.29 45.34 0.15 2.02 16 10 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 11 C 0.06 1.37 5.47 86.38 0.47 1.85 16 12 N -1.10 -30.39 5.32 -187.49 -1.00 -31.38 16 13 S 2.60 105.09 5.46 -56.49 -0.31 104.78 16 14 O -1.01 -46.89 18.08 -127.65 -2.31 -49.20 16 15 O -1.00 -48.70 17.49 -127.65 -2.23 -50.94 16 16 C -0.58 -22.92 6.01 71.98 0.43 -22.49 16 17 C 0.02 1.00 4.98 29.85 0.15 1.15 16 18 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 19 H 0.08 4.12 7.74 -2.91 -0.02 4.10 16 20 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 21 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 22 Si 0.98 43.83 29.54 68.60 2.03 45.85 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 26 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.79 7.84 -2.39 -0.02 0.78 16 31 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.07 0.71 6.86 -2.39 -0.02 0.69 16 34 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.08 2.37 5.43 -2.38 -0.01 2.36 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 9.77 6.97 -96.74 -0.67 9.10 16 38 H 0.15 4.93 8.14 -2.39 -0.02 4.91 16 39 H 0.15 4.96 8.14 -2.39 -0.02 4.94 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -97.13 366.78 -5.01 -102.15 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.35 Total: 14.67 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 4.15 Total: -50.47 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.15 Total: -106.83 kcal Atomic # 8 Polarization: -156.04 SS G_CDS: -8.72 Total: -164.77 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 160.07 SS G_CDS: -0.66 Total: 159.40 kcal Total: -97.13 -5.01 -102.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338160380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.019 kcal (2) G-P(sol) polarization free energy of solvation -97.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds