Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 110.54068 * 2 1 4 4 O 1.42098 * 110.54310 * 223.24524 * 2 1 3 5 5 N 1.65604 * 104.44944 * 111.62255 * 2 1 3 6 6 C 1.47740 * 125.82173 * 275.50042 * 5 2 1 7 7 C 1.54909 * 104.84227 * 155.83010 * 6 5 2 8 8 C 1.55154 * 101.58323 * 37.09206 * 7 6 5 9 9 C 1.47015 * 125.64730 * 95.58817 * 5 2 1 10 10 H 1.08999 * 109.88886 * 300.60221 * 9 5 2 11 11 C 1.53005 * 109.88046 * 61.61236 * 9 5 2 12 12 N 1.46496 * 109.47241 * 52.44618 * 11 9 5 13 13 S 1.65597 * 120.00074 * 163.99356 * 12 11 9 14 14 O 1.42107 * 104.27864 * 181.06851 * 13 12 11 15 15 O 1.42104 * 104.27497 * 308.92367 * 13 12 11 16 16 C 1.81402 * 104.45255 * 64.99568 * 13 12 11 17 17 C 1.53001 * 109.47433 * 179.97438 * 16 13 12 18 18 C 1.50694 * 109.47088 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00262 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99838 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00228 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00304 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47015 * 90.00138 * 22 20 18 24 24 H 1.48489 * 109.47445 * 210.00301 * 22 20 18 25 25 H 1.48501 * 109.46926 * 330.00630 * 22 20 18 26 26 H 1.08998 * 109.47282 * 308.37381 * 1 2 3 27 27 H 1.09003 * 109.47352 * 68.38011 * 1 2 3 28 28 H 1.09006 * 109.47019 * 188.37688 * 1 2 3 29 29 H 1.09001 * 110.28933 * 37.02494 * 6 5 2 30 30 H 1.08996 * 110.52705 * 274.75841 * 6 5 2 31 31 H 1.09001 * 111.00040 * 279.01636 * 7 6 5 32 32 H 1.08998 * 111.00354 * 155.17304 * 7 6 5 33 33 H 1.08996 * 110.72194 * 206.14058 * 8 7 6 34 34 H 1.09003 * 110.71571 * 82.85647 * 8 7 6 35 35 H 1.09008 * 109.46991 * 172.44829 * 11 9 5 36 36 H 1.09004 * 109.46861 * 292.44047 * 11 9 5 37 37 H 0.97002 * 119.99797 * 343.98671 * 12 11 9 38 38 H 1.09001 * 109.47061 * 300.00585 * 16 13 12 39 39 H 1.09003 * 109.46784 * 59.99873 * 16 13 12 40 40 H 1.09000 * 109.46870 * 300.00720 * 17 16 13 41 41 H 1.09002 * 109.46500 * 59.99882 * 17 16 13 42 42 H 0.96994 * 120.00418 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.3318 0.1985 2.7352 7 6 2.1195 -0.8283 3.8755 8 6 2.8465 -2.0768 3.3098 9 6 2.5537 -1.9913 1.7970 10 1 1.7086 -2.6324 1.5461 11 6 3.7881 -2.4234 1.0029 12 7 4.8730 -1.4648 1.2268 13 16 6.4292 -1.8678 0.8291 14 8 7.1925 -0.7287 1.2024 15 8 6.6364 -3.1261 1.4561 16 6 6.4021 -2.0524 -0.9753 17 6 7.8000 -2.4284 -1.4706 18 6 7.7773 -2.5823 -2.9695 19 1 6.8578 -2.4271 -3.5144 20 6 8.9305 -2.9203 -3.6454 21 7 10.0503 -3.1088 -2.9819 22 14 8.9026 -3.1105 -5.5035 23 1 9.2088 -1.8039 -6.1394 24 1 9.9199 -4.1113 -5.9140 25 1 7.5568 -3.5673 -5.9341 26 1 -0.3634 0.6379 0.8056 27 1 -0.3634 0.3786 -0.9554 28 1 -0.3633 -1.0168 0.1497 29 1 1.5557 0.9632 2.7641 30 1 3.3177 0.6564 2.8157 31 1 1.0591 -1.0293 4.0279 32 1 2.5878 -0.4886 4.7993 33 1 2.4289 -2.9907 3.7323 34 1 3.9184 -2.0177 3.4991 35 1 4.1040 -3.4133 1.3325 36 1 3.5442 -2.4548 -0.0590 37 1 4.6798 -0.5939 1.6078 38 1 5.6959 -2.8361 -1.2497 39 1 6.0960 -1.1113 -1.4322 40 1 8.5057 -1.6443 -1.1961 41 1 8.1064 -3.3693 -1.0136 42 1 10.8617 -3.3462 -3.4573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338160382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -141.447886 kcal Electronic energy + Delta-G solvation = -26983.373872 eV Core-core repulsion = 23024.975511 eV Total energy + Delta-G solvation = -3958.398361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40819 -37.37314 -36.47981 -36.16370 -35.35111 -34.49447 -33.78854 -31.32696 -31.05215 -29.93011 -29.80240 -25.49566 -25.10133 -22.35788 -21.55203 -21.37305 -19.12477 -18.95368 -17.98457 -17.58872 -16.79979 -16.35272 -16.27678 -15.74524 -15.47361 -15.33603 -14.60676 -14.50007 -14.42558 -14.23529 -13.71744 -13.58417 -13.44444 -13.29170 -13.21770 -12.65501 -12.42745 -12.28523 -12.19112 -11.85565 -11.67007 -11.55635 -11.51092 -11.49954 -11.40812 -11.37996 -11.24313 -11.00996 -10.98801 -10.86399 -10.33212 -10.27513 -9.67287 -9.39391 -9.33866 -8.88270 -8.42056 -6.04316 -4.08920 -0.09770 0.92039 2.28300 3.26155 3.32562 3.38158 3.41975 3.60480 3.71349 4.06144 4.25669 4.34780 4.38281 4.46011 4.53338 4.62263 4.70454 4.82713 4.98223 5.05866 5.22250 5.23694 5.30874 5.36635 5.50853 5.53059 5.58058 5.65932 5.74375 5.82792 5.92586 5.93672 6.05614 6.19708 6.63720 7.20368 7.40138 7.46322 7.89969 8.27617 8.94856 9.55285 11.06870 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003617 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.154668 B = 7739.751567 C = 8917.536005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.618 3.382 3 O -0.947 6.947 4 O -0.937 6.937 5 N -1.010 6.010 6 C 0.119 3.881 7 C -0.131 4.131 8 C -0.128 4.128 9 C 0.151 3.849 10 H 0.089 0.911 11 C 0.085 3.915 12 N -1.124 6.124 13 S 2.592 3.408 14 O -0.969 6.969 15 O -0.968 6.968 16 C -0.589 4.589 17 C 0.028 3.972 18 C -0.517 4.517 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.410 0.590 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.662 4.587 13.486 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.712 3.288 3 O -0.938 6.938 4 O -0.927 6.927 5 N -0.849 5.849 6 C -0.006 4.006 7 C -0.170 4.170 8 C -0.167 4.167 9 C 0.044 3.956 10 H 0.107 0.893 11 C -0.043 4.043 12 N -0.882 5.882 13 S 2.690 3.310 14 O -0.960 6.960 15 O -0.958 6.958 16 C -0.723 4.723 17 C -0.011 4.011 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.531 5.531 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.244 0.756 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.197 4.564 13.279 27.115 hybrid contribution -1.177 0.227 -1.199 1.695 sum -24.373 4.791 12.080 27.621 Atomic orbital electron populations 1.30611 1.29235 1.11438 1.11226 1.04813 0.77444 0.74245 0.72337 1.93635 1.77204 1.37659 1.85275 1.93631 1.76964 1.61189 1.60939 1.58856 1.83519 1.17176 1.25307 1.22100 1.02294 0.93644 0.82576 1.22791 1.01140 0.95238 0.97810 1.22753 1.02591 0.98686 0.92686 1.21539 0.96596 0.81389 0.96095 0.89338 1.22034 0.87133 0.93026 1.02121 1.55695 1.25670 1.26192 1.80693 1.05536 0.72164 0.74116 0.79204 1.93549 1.68128 1.51376 1.82907 1.93527 1.83846 1.44331 1.74117 1.30432 1.10365 1.10552 1.20930 1.18962 0.85851 0.97830 0.98456 1.21040 0.95774 1.47982 0.90858 0.91948 1.25065 0.95426 0.95150 0.98882 1.69960 1.00007 1.47232 1.35875 0.86470 0.77883 0.77953 0.84987 1.20515 1.21083 1.19734 0.85679 0.85484 0.85371 0.90772 0.90661 0.90701 0.89822 0.89782 0.89422 0.89030 0.88643 0.75620 0.86055 0.86013 0.94920 0.94863 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.17 10.99 101.05 1.11 -2.06 16 2 S 2.62 23.93 6.26 -107.50 -0.67 23.25 16 3 O -0.95 -12.11 17.70 -57.54 -1.02 -13.13 16 4 O -0.94 -11.70 15.13 -57.54 -0.87 -12.57 16 5 N -1.01 -7.81 2.61 -104.18 -0.27 -8.09 16 6 C 0.12 0.74 6.60 -2.35 -0.02 0.73 16 7 C -0.13 -0.62 7.08 -24.58 -0.17 -0.80 16 8 C -0.13 -0.83 6.39 -24.90 -0.16 -0.99 16 9 C 0.15 1.16 3.31 -66.95 -0.22 0.94 16 10 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 11 C 0.08 0.97 5.40 -4.04 -0.02 0.95 16 12 N -1.12 -15.71 5.17 -10.61 -0.05 -15.76 16 13 S 2.59 49.04 5.46 -107.50 -0.59 48.45 16 14 O -0.97 -21.19 18.08 -57.54 -1.04 -22.23 16 15 O -0.97 -20.27 17.48 -57.54 -1.01 -21.27 16 16 C -0.59 -12.30 6.01 37.16 0.22 -12.08 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 19 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H 0.12 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.54 7.58 -51.93 -0.39 0.15 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.73 7.40 -51.93 -0.38 0.35 16 35 H 0.09 1.00 7.68 -51.92 -0.40 0.60 16 36 H 0.10 1.16 5.99 -51.93 -0.31 0.85 16 37 H 0.41 5.14 7.06 -34.47 -0.24 4.90 16 38 H 0.12 2.29 8.14 -51.92 -0.42 1.87 16 39 H 0.12 2.41 8.14 -51.92 -0.42 1.99 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -40.24 366.85 -10.43 -50.67 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.35 Total: 1.12 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 0.19 Total: -26.37 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.41 Total: -50.36 kcal Atomic # 8 Polarization: -65.27 SS G_CDS: -3.94 Total: -69.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 72.97 SS G_CDS: -1.26 Total: 71.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.24 -10.43 -50.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338160382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.773 kcal (2) G-P(sol) polarization free energy of solvation -40.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds