Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 110.54068 * 2 1 4 4 O 1.42098 * 110.54310 * 223.24524 * 2 1 3 5 5 N 1.65604 * 104.44944 * 111.62255 * 2 1 3 6 6 C 1.47740 * 125.82173 * 275.50042 * 5 2 1 7 7 C 1.54909 * 104.84227 * 155.83010 * 6 5 2 8 8 C 1.55154 * 101.58323 * 37.09206 * 7 6 5 9 9 C 1.47015 * 125.64730 * 95.58817 * 5 2 1 10 10 H 1.08999 * 109.88886 * 300.60221 * 9 5 2 11 11 C 1.53005 * 109.88046 * 61.61236 * 9 5 2 12 12 N 1.46496 * 109.47241 * 52.44618 * 11 9 5 13 13 S 1.65597 * 120.00074 * 163.99356 * 12 11 9 14 14 O 1.42107 * 104.27864 * 181.06851 * 13 12 11 15 15 O 1.42104 * 104.27497 * 308.92367 * 13 12 11 16 16 C 1.81402 * 104.45255 * 64.99568 * 13 12 11 17 17 C 1.53001 * 109.47433 * 179.97438 * 16 13 12 18 18 C 1.50694 * 109.47088 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00262 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99838 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00228 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00304 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47015 * 90.00138 * 22 20 18 24 24 H 1.48489 * 109.47445 * 210.00301 * 22 20 18 25 25 H 1.48501 * 109.46926 * 330.00630 * 22 20 18 26 26 H 1.08998 * 109.47282 * 308.37381 * 1 2 3 27 27 H 1.09003 * 109.47352 * 68.38011 * 1 2 3 28 28 H 1.09006 * 109.47019 * 188.37688 * 1 2 3 29 29 H 1.09001 * 110.28933 * 37.02494 * 6 5 2 30 30 H 1.08996 * 110.52705 * 274.75841 * 6 5 2 31 31 H 1.09001 * 111.00040 * 279.01636 * 7 6 5 32 32 H 1.08998 * 111.00354 * 155.17304 * 7 6 5 33 33 H 1.08996 * 110.72194 * 206.14058 * 8 7 6 34 34 H 1.09003 * 110.71571 * 82.85647 * 8 7 6 35 35 H 1.09008 * 109.46991 * 172.44829 * 11 9 5 36 36 H 1.09004 * 109.46861 * 292.44047 * 11 9 5 37 37 H 0.97002 * 119.99797 * 343.98671 * 12 11 9 38 38 H 1.09001 * 109.47061 * 300.00585 * 16 13 12 39 39 H 1.09003 * 109.46784 * 59.99873 * 16 13 12 40 40 H 1.09000 * 109.46870 * 300.00720 * 17 16 13 41 41 H 1.09002 * 109.46500 * 59.99882 * 17 16 13 42 42 H 0.96994 * 120.00418 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.3318 0.1985 2.7352 7 6 2.1195 -0.8283 3.8755 8 6 2.8465 -2.0768 3.3098 9 6 2.5537 -1.9913 1.7970 10 1 1.7086 -2.6324 1.5461 11 6 3.7881 -2.4234 1.0029 12 7 4.8730 -1.4648 1.2268 13 16 6.4292 -1.8678 0.8291 14 8 7.1925 -0.7287 1.2024 15 8 6.6364 -3.1261 1.4561 16 6 6.4021 -2.0524 -0.9753 17 6 7.8000 -2.4284 -1.4706 18 6 7.7773 -2.5823 -2.9695 19 1 6.8578 -2.4271 -3.5144 20 6 8.9305 -2.9203 -3.6454 21 7 10.0503 -3.1088 -2.9819 22 14 8.9026 -3.1105 -5.5035 23 1 9.2088 -1.8039 -6.1394 24 1 9.9199 -4.1113 -5.9140 25 1 7.5568 -3.5673 -5.9341 26 1 -0.3634 0.6379 0.8056 27 1 -0.3634 0.3786 -0.9554 28 1 -0.3633 -1.0168 0.1497 29 1 1.5557 0.9632 2.7641 30 1 3.3177 0.6564 2.8157 31 1 1.0591 -1.0293 4.0279 32 1 2.5878 -0.4886 4.7993 33 1 2.4289 -2.9907 3.7323 34 1 3.9184 -2.0177 3.4991 35 1 4.1040 -3.4133 1.3325 36 1 3.5442 -2.4548 -0.0590 37 1 4.6798 -0.5939 1.6078 38 1 5.6959 -2.8361 -1.2497 39 1 6.0960 -1.1113 -1.4322 40 1 8.5057 -1.6443 -1.1961 41 1 8.1064 -3.3693 -1.0136 42 1 10.8617 -3.3462 -3.4573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338160382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -175.686336 kcal Electronic energy + Delta-G solvation = -26984.858562 eV Core-core repulsion = 23024.975511 eV Total energy + Delta-G solvation = -3959.883051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01302 -38.18555 -38.14498 -37.04135 -36.95692 -35.91212 -35.51735 -33.14136 -31.81888 -30.64144 -30.23544 -27.60662 -25.87642 -23.61651 -22.88610 -21.91605 -20.45069 -19.77009 -19.18638 -18.72714 -18.39675 -17.41485 -17.15683 -17.06593 -16.84922 -16.54422 -16.19797 -15.80132 -15.39083 -15.08009 -14.77055 -14.49670 -14.21512 -14.10082 -13.93574 -13.85701 -13.73564 -13.30575 -13.23368 -13.12991 -13.10605 -13.00145 -12.94747 -12.87279 -12.79996 -12.49048 -12.27587 -12.14589 -12.01835 -11.92487 -11.88473 -11.73823 -11.47386 -11.17440 -10.65879 -10.26828 -9.93960 -8.27176 -6.41313 -0.71732 -0.68056 1.38864 1.41445 1.52911 1.64946 1.88145 2.37305 2.75799 3.00794 3.05532 3.10345 3.24117 3.58315 3.75669 3.92193 4.03523 4.07538 4.10111 4.21111 4.26645 4.45791 4.48115 4.64121 4.72829 4.75415 4.77556 4.92447 5.03261 5.07439 5.13727 5.21783 5.24903 5.25922 5.32128 5.51805 5.55218 5.67044 6.05540 6.08867 6.71332 7.28462 8.85255 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003617 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.154668 B = 7739.751567 C = 8917.536005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.609 3.391 3 O -0.998 6.998 4 O -0.982 6.982 5 N -1.012 6.012 6 C 0.107 3.893 7 C -0.118 4.118 8 C -0.131 4.131 9 C 0.153 3.847 10 H 0.126 0.874 11 C 0.067 3.933 12 N -1.106 6.106 13 S 2.623 3.377 14 O -1.001 7.001 15 O -0.987 6.987 16 C -0.594 4.594 17 C 0.022 3.978 18 C -0.542 4.542 19 H 0.071 0.929 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.259 1.259 26 H 0.150 0.850 27 H 0.138 0.862 28 H 0.154 0.846 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.005 0.995 41 H 0.012 0.988 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.399 4.326 13.702 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.708 3.292 3 O -0.988 6.988 4 O -0.972 6.972 5 N -0.850 5.850 6 C -0.017 4.017 7 C -0.157 4.157 8 C -0.170 4.170 9 C 0.045 3.955 10 H 0.144 0.856 11 C -0.061 4.061 12 N -0.869 5.869 13 S 2.718 3.282 14 O -0.991 6.991 15 O -0.976 6.976 16 C -0.726 4.726 17 C -0.016 4.016 18 C -0.581 4.581 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.183 1.183 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.172 0.828 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.254 0.746 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.024 0.976 41 H 0.030 0.970 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.890 4.313 13.485 30.390 hybrid contribution -0.127 0.318 -1.189 1.237 sum -27.017 4.631 12.296 30.043 Atomic orbital electron populations 1.30333 1.22736 1.13923 1.13009 1.04698 0.79761 0.72672 0.72052 1.93573 1.79698 1.39660 1.85889 1.93573 1.79343 1.61788 1.62513 1.58665 1.83965 1.17286 1.25085 1.22300 1.02177 0.94640 0.82592 1.22778 1.02456 0.93427 0.97057 1.22785 1.01540 1.00689 0.92009 1.21694 0.95700 0.81899 0.96181 0.85599 1.22446 0.87962 0.92763 1.02881 1.55230 1.24582 1.27281 1.79778 1.04362 0.72980 0.73077 0.77744 1.93496 1.70266 1.52446 1.82928 1.93496 1.84863 1.45390 1.73890 1.30387 1.07181 1.11525 1.23493 1.18814 0.88725 0.95908 0.98186 1.21498 0.96396 1.48127 0.92068 0.91126 1.26115 0.94859 0.94453 1.04646 1.70097 1.00851 1.48029 1.38258 0.85296 0.78573 0.78275 0.78014 1.19658 1.20320 1.18311 0.83160 0.84366 0.82802 0.88491 0.92684 0.88151 0.89316 0.87644 0.91898 0.88545 0.89253 0.74563 0.84166 0.85230 0.97649 0.97007 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.36 10.99 113.37 1.25 -2.11 16 2 S 2.61 44.22 6.26 -56.49 -0.35 43.87 16 3 O -1.00 -25.57 17.70 -127.65 -2.26 -27.83 16 4 O -0.98 -24.10 15.13 -127.65 -1.93 -26.03 16 5 N -1.01 -13.62 2.61 -483.53 -1.26 -14.89 16 6 C 0.11 1.13 6.60 86.79 0.57 1.70 16 7 C -0.12 -0.75 7.08 31.99 0.23 -0.52 16 8 C -0.13 -1.38 6.39 31.78 0.20 -1.17 16 9 C 0.15 1.98 3.31 45.35 0.15 2.13 16 10 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 11 C 0.07 1.47 5.40 86.38 0.47 1.94 16 12 N -1.11 -31.24 5.17 -187.48 -0.97 -32.21 16 13 S 2.62 102.65 5.46 -56.49 -0.31 102.34 16 14 O -1.00 -45.56 18.08 -127.65 -2.31 -47.87 16 15 O -0.99 -42.33 17.48 -127.65 -2.23 -44.57 16 16 C -0.59 -25.70 6.01 71.98 0.43 -25.27 16 17 C 0.02 1.26 4.98 29.85 0.15 1.41 16 18 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 19 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 21 N -0.93 -58.59 13.29 21.45 0.28 -58.30 16 22 Si 0.98 45.26 29.54 68.60 2.03 47.28 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.78 7.58 -2.39 -0.02 0.76 16 31 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.99 7.40 -2.39 -0.02 0.97 16 35 H 0.10 2.02 7.68 -2.38 -0.02 2.01 16 36 H 0.09 2.14 5.99 -2.39 -0.01 2.12 16 37 H 0.42 10.70 7.06 -96.74 -0.68 10.01 16 38 H 0.14 5.41 8.14 -2.39 -0.02 5.39 16 39 H 0.13 5.32 8.14 -2.39 -0.02 5.30 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -90.94 366.85 -4.83 -95.77 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.34 Total: 15.82 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 4.14 Total: -53.38 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -1.95 Total: -105.40 kcal Atomic # 8 Polarization: -137.57 SS G_CDS: -8.73 Total: -146.30 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 146.88 SS G_CDS: -0.66 Total: 146.21 kcal Total: -90.94 -4.83 -95.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338160382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.917 kcal (2) G-P(sol) polarization free energy of solvation -90.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds