Wall clock time and date at job start Sat Apr 11 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54626 * 2 1 4 4 O 1.42101 * 110.53678 * 223.24899 * 2 1 3 5 5 N 1.65597 * 104.45066 * 111.62686 * 2 1 3 6 6 C 1.46499 * 119.99926 * 64.71997 * 5 2 1 7 7 C 1.53786 * 113.61715 * 242.77603 * 6 5 2 8 8 C 1.53780 * 87.08235 * 220.01938 * 7 6 5 9 9 N 1.46497 * 113.61393 * 139.97637 * 8 7 6 10 10 S 1.65605 * 119.99948 * 117.50330 * 9 8 7 11 11 O 1.42097 * 104.27716 * 181.07358 * 10 9 8 12 12 O 1.42104 * 104.27680 * 308.92739 * 10 9 8 13 13 C 1.81400 * 104.44972 * 64.99818 * 10 9 8 14 14 C 1.52999 * 109.47210 * 179.97438 * 13 10 9 15 15 C 1.52999 * 109.47138 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47296 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99327 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00170 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99874 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46898 * 120.00280 * 20 18 16 23 23 H 1.48499 * 109.47039 * 240.00320 * 20 18 16 24 24 C 1.53783 * 87.08222 * 25.43082 * 8 7 6 25 25 H 1.09004 * 109.46533 * 308.37804 * 1 2 3 26 26 H 1.09004 * 109.46969 * 68.37081 * 1 2 3 27 27 H 1.08990 * 109.47555 * 188.37683 * 1 2 3 28 28 H 0.97001 * 120.00224 * 245.00210 * 5 2 1 29 29 H 1.09005 * 112.85019 * 14.08047 * 6 5 2 30 30 H 1.09004 * 113.61029 * 334.56387 * 7 6 5 31 31 H 1.08999 * 113.61591 * 105.46932 * 7 6 5 32 32 H 1.08996 * 113.61503 * 270.87901 * 8 7 6 33 33 H 0.97004 * 120.00769 * 297.50263 * 9 8 7 34 34 H 1.08995 * 109.47059 * 300.00567 * 13 10 9 35 35 H 1.09001 * 109.46808 * 60.00028 * 13 10 9 36 36 H 1.08997 * 109.46914 * 300.00356 * 14 13 10 37 37 H 1.09001 * 109.46616 * 60.00381 * 14 13 10 38 38 H 1.09003 * 109.47067 * 300.00229 * 15 14 13 39 39 H 1.09001 * 109.46965 * 60.00067 * 15 14 13 40 40 H 0.97008 * 119.99920 * 179.97438 * 19 18 16 41 41 H 1.08993 * 113.61723 * 220.02134 * 24 8 7 42 42 H 1.08997 * 113.61288 * 89.11494 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8854 -1.9687 1.8529 7 6 0.9171 -2.0706 3.0433 8 6 1.7576 -3.2654 3.5237 9 7 1.9609 -3.2946 4.9742 10 16 1.3712 -4.5581 5.8677 11 8 1.7279 -4.2379 7.2053 12 8 0.0086 -4.6580 5.4767 13 6 2.3074 -5.9991 5.2867 14 6 1.8489 -7.2454 6.0465 15 6 2.6390 -8.4607 5.5570 16 6 2.1869 -9.6884 6.3050 17 1 1.4130 -9.6097 7.0543 18 6 2.7603 -10.9121 6.0320 19 7 3.7022 -11.0079 5.1192 20 14 2.2004 -12.4337 6.9597 21 1 1.1369 -12.0606 7.9266 22 1 1.6665 -13.4313 5.9979 23 1 3.3523 -13.0190 7.6916 24 6 2.9341 -2.6484 2.7491 25 1 -0.3632 0.6381 0.8057 26 1 -0.3633 0.3788 -0.9553 27 1 -0.3634 -1.0166 0.1497 28 1 2.6921 -0.0237 2.1256 29 1 1.5886 -2.5710 0.9942 30 1 0.9567 -1.2115 3.7131 31 1 -0.0999 -2.3390 2.7572 32 1 1.4248 -4.2227 3.1226 33 1 2.4408 -2.5739 5.4113 34 1 2.1338 -6.1391 4.2198 35 1 3.3707 -5.8369 5.4635 36 1 2.0229 -7.1050 7.1133 37 1 0.7855 -7.4077 5.8700 38 1 2.4653 -8.6012 4.4901 39 1 3.7022 -8.2981 5.7338 40 1 4.1060 -11.8689 4.9274 41 1 3.5455 -3.3833 2.2255 42 1 3.5251 -1.9474 3.3384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619752039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:49 Heat of formation + Delta-G solvation = -137.378790 kcal Electronic energy + Delta-G solvation = -25177.094293 eV Core-core repulsion = 21218.872382 eV Total energy + Delta-G solvation = -3958.221911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87882 -37.51151 -36.93752 -36.38175 -35.81918 -34.71482 -34.70058 -32.22193 -31.89221 -29.96632 -27.85649 -26.13915 -24.20121 -23.77284 -20.93023 -20.59280 -19.94857 -19.33991 -18.13659 -17.64890 -17.18025 -16.67415 -16.63019 -16.10909 -15.77447 -15.51979 -15.37677 -14.70232 -14.50914 -14.14148 -13.97890 -13.73998 -13.58594 -13.03481 -12.92538 -12.67001 -12.54251 -12.48360 -12.41463 -12.32275 -12.01917 -11.92397 -11.87971 -11.82986 -11.56598 -11.47468 -11.28402 -11.01272 -10.95606 -10.86839 -10.44310 -9.99488 -9.89438 -9.74174 -9.35746 -9.11121 -8.43897 -6.08555 -4.11680 -0.19817 0.38903 2.21684 2.76659 3.27479 3.34297 3.35219 3.39845 3.72447 3.84444 3.96868 4.06800 4.26238 4.28013 4.37945 4.39550 4.40903 4.47202 4.70802 4.78298 5.09624 5.14721 5.18171 5.27787 5.28442 5.30037 5.50545 5.54477 5.58256 5.83365 6.05045 6.21901 6.40121 6.47074 6.77776 6.83447 7.53676 7.63102 7.89443 8.29680 8.94833 9.53368 11.02641 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002105 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.765004 B =13299.088771 C =14153.995515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.612 3.388 3 O -0.962 6.962 4 O -0.955 6.955 5 N -1.104 6.104 6 C 0.120 3.880 7 C -0.168 4.168 8 C 0.129 3.871 9 N -1.110 6.110 10 S 2.597 3.403 11 O -0.964 6.964 12 O -0.960 6.960 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.149 4.149 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.419 0.581 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.416 0.584 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 24.133 -9.385 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.704 3.296 3 O -0.952 6.952 4 O -0.945 6.945 5 N -0.862 5.862 6 C 0.011 3.989 7 C -0.209 4.209 8 C 0.020 3.980 9 N -0.865 5.865 10 S 2.693 3.307 11 O -0.954 6.954 12 O -0.950 6.950 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.190 4.190 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.254 0.746 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.915 24.116 -9.715 26.460 hybrid contribution 0.043 -0.734 0.767 1.062 sum -4.871 23.382 -8.948 25.506 Atomic orbital electron populations 1.30547 1.28206 1.11899 1.11611 1.04792 0.77606 0.73820 0.73410 1.93625 1.78038 1.37821 1.85757 1.93641 1.76955 1.61743 1.62172 1.55524 1.73406 1.20827 1.36429 1.22245 0.97266 0.81888 0.97478 1.24085 0.99665 0.99625 0.97557 1.22035 0.96795 0.99544 0.79632 1.55709 1.74670 1.39867 1.16295 1.05428 0.75609 0.75736 0.73919 1.93583 1.84794 1.82637 1.34379 1.93579 1.31890 1.86260 1.83298 1.30560 1.14748 1.16807 1.11923 1.21504 1.01349 0.93140 0.98569 1.19070 0.95048 0.89931 0.96771 1.21286 1.21106 0.92601 1.21436 0.92321 1.25023 0.94968 0.99183 0.95242 1.69967 1.26124 1.24979 1.32324 0.86499 0.78652 0.82854 0.79810 1.19613 1.20937 1.20940 1.23781 0.97139 1.00469 0.97603 0.85169 0.85362 0.85176 0.74603 0.85857 0.88487 0.89737 0.86221 0.75049 0.85537 0.85191 0.91572 0.91552 0.96100 0.96107 0.92927 0.89314 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.85 10.88 101.05 1.10 -0.75 16 2 S 2.61 15.25 6.07 -107.50 -0.65 14.60 16 3 O -0.96 -9.09 18.08 -57.54 -1.04 -10.13 16 4 O -0.96 -9.36 17.59 -57.54 -1.01 -10.38 16 5 N -1.10 -4.92 5.68 -4.19 -0.02 -4.95 16 6 C 0.12 0.58 4.31 -67.11 -0.29 0.29 16 7 C -0.17 -0.90 7.68 -25.92 -0.20 -1.10 16 8 C 0.13 0.89 4.23 -67.12 -0.28 0.60 16 9 N -1.11 -9.37 5.68 -4.20 -0.02 -9.39 16 10 S 2.60 33.81 5.40 -107.50 -0.58 33.23 16 11 O -0.96 -15.74 18.08 -57.54 -1.04 -16.78 16 12 O -0.96 -15.23 17.82 -57.54 -1.03 -16.26 16 13 C -0.61 -8.49 6.07 37.16 0.23 -8.26 16 14 C -0.11 -2.05 5.16 -26.73 -0.14 -2.19 16 15 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 16 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.15 -0.80 7.65 -25.92 -0.20 -1.00 16 25 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 26 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 27 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.42 1.34 8.91 -34.47 -0.31 1.03 16 29 H 0.12 0.49 7.77 -51.93 -0.40 0.09 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.42 2.72 8.91 -34.47 -0.31 2.41 16 34 H 0.13 1.50 7.84 -51.93 -0.41 1.09 16 35 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -40.84 378.96 -10.75 -51.58 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.44 Total: -2.90 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -0.33 Total: -25.15 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.69 Total: -39.82 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -4.12 Total: -53.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -1.23 Total: 47.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.84 -10.75 -51.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.796 kcal (2) G-P(sol) polarization free energy of solvation -40.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds