Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42099 * 110.54200 * 2 1 4 4 O 1.42097 * 110.54550 * 223.25122 * 2 1 3 5 5 N 1.65600 * 104.44945 * 111.62526 * 2 1 3 6 6 C 1.47579 * 134.49453 * 90.00674 * 5 2 1 7 7 C 1.53945 * 86.12096 * 155.35637 * 6 5 2 8 8 C 1.50698 * 113.74298 * 137.95088 * 7 6 5 9 9 O 1.21287 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00159 * 180.27376 * 8 7 6 11 11 C 1.39920 * 120.00350 * 175.21117 * 10 8 7 12 12 C 1.38964 * 120.03851 * 214.85002 * 11 10 8 13 13 C 1.38158 * 120.06446 * 179.72399 * 12 11 10 14 14 C 1.38163 * 120.14009 * 0.54988 * 13 12 11 15 15 C 1.38915 * 120.07177 * 359.73124 * 14 13 12 16 16 O 1.35752 * 120.03232 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00181 * 5.36439 * 16 15 14 18 18 H 1.07999 * 119.99958 * 354.95986 * 17 16 15 19 19 C 1.38655 * 120.00137 * 174.96499 * 17 16 15 20 20 N 1.31559 * 119.99906 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00273 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47173 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47393 * 210.00110 * 21 19 17 24 24 H 1.48503 * 109.46881 * 330.00058 * 21 19 17 25 25 C 1.38719 * 120.03293 * 35.12719 * 11 10 8 26 26 C 1.47580 * 134.49424 * 269.99690 * 5 2 1 27 27 H 1.09004 * 109.47247 * 308.37297 * 1 2 3 28 28 H 1.08994 * 109.47278 * 68.37566 * 1 2 3 29 29 H 1.09000 * 109.47086 * 188.37510 * 1 2 3 30 30 H 1.09000 * 113.76975 * 41.05186 * 6 5 2 31 31 H 1.09000 * 113.76512 * 269.65653 * 6 5 2 32 32 H 1.08993 * 113.73583 * 269.15061 * 7 6 5 33 33 H 0.97007 * 119.99706 * 355.21454 * 10 8 7 34 34 H 1.07997 * 119.96662 * 359.97438 * 12 11 10 35 35 H 1.08000 * 119.92768 * 180.25507 * 13 12 11 36 36 H 1.08001 * 119.96595 * 179.74559 * 14 13 12 37 37 H 0.97001 * 119.99958 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.06640 * 359.97438 * 25 11 10 39 39 H 1.08999 * 113.76824 * 90.33782 * 26 5 2 40 40 H 1.09006 * 113.77086 * 318.94801 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9117 5 7 2.2271 -0.5910 1.4907 6 6 2.4853 -1.9387 2.0338 7 6 3.3357 -1.2305 3.1040 8 6 3.1442 -1.7814 4.4936 9 8 2.3742 -2.6996 4.6811 10 7 3.8239 -1.2499 5.5288 11 6 3.5727 -1.6928 6.8320 12 6 3.6405 -0.8006 7.8953 13 6 3.3870 -1.2362 9.1816 14 6 3.0765 -2.5618 9.4166 15 6 3.0129 -3.4599 8.3588 16 8 2.7083 -4.7624 8.5906 17 6 2.3700 -5.0967 9.8522 18 1 2.4289 -4.3605 10.6402 19 6 1.9466 -6.3857 10.1380 20 7 1.8745 -7.2824 9.1781 21 14 1.4785 -6.8491 11.8861 22 1 0.0307 -6.5934 12.0952 23 1 1.7642 -8.2890 12.1099 24 1 2.2686 -6.0331 12.8428 25 6 3.2613 -3.0244 7.0648 26 6 2.4853 0.0185 2.8098 27 1 -0.3634 0.6380 0.8057 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 3.0628 -2.5782 1.3662 31 1 1.5973 -2.4293 2.4322 32 1 4.3852 -1.1234 2.8303 33 1 4.4873 -0.5601 5.3704 34 1 3.8877 0.2352 7.7153 35 1 3.4362 -0.5400 10.0058 36 1 2.8829 -2.9002 10.4238 37 1 1.5779 -8.1841 9.3780 38 1 3.2120 -3.7206 6.2406 39 1 1.5972 0.1029 3.4361 40 1 3.0627 0.9418 2.7617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900237610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -55.295648 kcal Electronic energy + Delta-G solvation = -26386.669504 eV Core-core repulsion = 22296.563033 eV Total energy + Delta-G solvation = -4090.106470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80578 -39.20330 -38.13768 -37.43559 -36.45160 -36.30000 -34.15458 -32.26246 -30.27349 -29.82504 -29.20230 -28.15383 -26.61815 -25.33434 -23.68362 -21.94532 -21.19142 -19.98012 -19.12308 -18.31436 -18.09525 -17.66559 -17.04169 -16.56010 -16.43608 -15.64978 -15.46797 -15.08679 -14.85787 -14.34417 -14.31513 -14.06935 -13.85558 -13.59305 -13.56008 -13.50816 -13.01117 -12.86812 -12.72062 -12.48474 -12.46547 -12.38474 -11.79987 -11.75137 -11.61755 -11.44343 -11.35383 -11.19815 -11.02734 -10.80137 -10.46967 -9.86940 -9.75804 -9.49646 -9.19114 -8.83100 -7.75047 -7.21714 -6.43603 -4.02853 -0.16660 1.92459 2.10321 2.30945 2.69386 3.10644 3.13445 3.15844 3.19007 3.50173 3.60154 3.97165 4.02102 4.04055 4.41027 4.43490 4.50865 4.64025 4.81580 5.02480 5.10825 5.14175 5.25612 5.30908 5.33509 5.42795 5.59632 5.69962 5.79357 5.96052 6.06473 6.18148 6.35196 6.64677 6.82676 7.00291 7.05226 7.32447 7.45162 7.61835 7.75605 8.01051 8.24561 9.01331 9.72097 10.74219 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002197 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.085077 B =12742.600543 C =13617.605135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.631 3.369 3 O -0.953 6.953 4 O -0.951 6.951 5 N -1.039 6.039 6 C 0.146 3.854 7 C -0.144 4.144 8 C 0.514 3.486 9 O -0.504 6.504 10 N -0.665 5.665 11 C 0.172 3.828 12 C -0.235 4.235 13 C -0.059 4.059 14 C -0.245 4.245 15 C 0.166 3.834 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.186 4.186 26 C 0.142 3.858 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.407 0.593 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 16.340 -13.483 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.726 3.274 3 O -0.944 6.944 4 O -0.941 6.941 5 N -0.878 5.878 6 C 0.021 3.979 7 C -0.168 4.168 8 C 0.299 3.701 9 O -0.377 6.377 10 N -0.310 5.310 11 C 0.079 3.921 12 C -0.256 4.256 13 C -0.078 4.078 14 C -0.265 4.265 15 C 0.111 3.889 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.208 4.208 26 C 0.016 3.984 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.242 0.758 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.241 15.570 -14.486 21.268 hybrid contribution -0.697 0.106 1.153 1.351 sum -0.456 15.676 -13.334 20.585 Atomic orbital electron populations 1.30625 1.29020 1.11734 1.11277 1.04318 0.77286 0.73753 0.72048 1.93605 1.77766 1.37568 1.85465 1.93615 1.77687 1.61884 1.60947 1.60303 1.84910 1.18339 1.24225 1.22739 0.99187 0.84010 0.91989 1.23399 1.02703 0.98196 0.92454 1.20392 0.80550 0.83219 0.85912 1.90817 1.35599 1.26988 1.84335 1.43389 1.40930 1.41455 1.05219 1.17188 1.00249 0.92136 0.82565 1.20270 1.14978 0.97920 0.92420 1.20508 0.96847 0.94981 0.95456 1.21193 1.11597 0.93870 0.99800 1.19151 0.91991 0.85278 0.92504 1.83988 1.73342 1.18833 1.31442 1.21341 1.45534 0.97102 0.82849 0.88986 1.25305 0.96535 0.94797 0.99910 1.70052 1.43179 1.03993 1.32247 0.85707 0.79078 0.78258 0.80333 1.19887 1.20273 1.19190 1.20162 1.10735 0.94274 0.95596 1.22683 0.98419 0.96243 0.81037 0.85438 0.85519 0.85280 0.88603 0.87824 0.85328 0.75765 0.87341 0.87065 0.85480 0.91999 0.84814 0.89042 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.35 10.99 101.05 1.11 -2.24 16 2 S 2.63 21.19 6.57 -107.50 -0.71 20.48 16 3 O -0.95 -10.48 18.02 -57.54 -1.04 -11.52 16 4 O -0.95 -11.00 18.02 -57.54 -1.04 -12.04 16 5 N -1.04 -8.10 3.99 -118.80 -0.47 -8.58 16 6 C 0.15 1.26 8.26 -2.98 -0.02 1.24 16 7 C -0.14 -1.18 4.34 -90.85 -0.39 -1.58 16 8 C 0.51 6.55 7.21 -10.99 -0.08 6.47 16 9 O -0.50 -8.92 13.34 5.55 0.07 -8.84 16 10 N -0.67 -8.23 5.34 -9.88 -0.05 -8.28 16 11 C 0.17 2.95 6.30 -83.72 -0.53 2.43 16 12 C -0.23 -3.73 9.96 -39.34 -0.39 -4.13 16 13 C -0.06 -1.03 10.03 -39.64 -0.40 -1.42 16 14 C -0.24 -5.22 9.17 -39.36 -0.36 -5.58 16 15 C 0.17 4.04 6.64 -39.13 -0.26 3.78 16 16 O -0.17 -5.01 9.76 0.06 0.00 -5.01 16 17 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 18 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 21 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.19 -4.07 8.64 -39.21 -0.34 -4.41 16 26 C 0.14 0.98 8.47 -2.98 -0.03 0.95 16 27 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.96 7.41 -51.93 -0.38 0.58 16 32 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.41 3.31 8.82 -40.82 -0.36 2.95 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.70 5.63 -52.49 -0.30 2.41 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 3.13 6.23 -52.49 -0.33 2.80 16 39 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -38.62 359.22 -8.15 -46.77 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.58 Total: 5.03 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.49 Total: -14.19 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.23 Total: -41.53 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -2.00 Total: -37.41 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 21.19 SS G_CDS: -0.71 Total: 20.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.62 -8.15 -46.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.526 kcal (2) G-P(sol) polarization free energy of solvation -38.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds