Wall clock time and date at job start Sat Apr 11 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 110.54226 * 2 1 4 4 O 1.42104 * 110.53997 * 223.25432 * 2 1 3 5 5 N 1.65594 * 104.45171 * 111.62406 * 2 1 3 6 6 C 1.46505 * 119.99561 * 65.00169 * 5 2 1 7 7 C 1.53045 * 109.45940 * 144.99645 * 6 5 2 8 8 C 1.53189 * 109.31267 * 181.36845 * 7 6 5 9 9 N 1.46923 * 108.77751 * 305.36979 * 8 7 6 10 10 S 1.65606 * 120.62889 * 233.58517 * 9 8 7 11 11 O 1.42094 * 104.27817 * 333.92814 * 10 9 8 12 12 O 1.42106 * 104.27580 * 206.07045 * 10 9 8 13 13 C 1.81396 * 104.45103 * 90.00030 * 10 9 8 14 14 C 1.52997 * 109.47360 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.46931 * 118.74107 * 53.86074 * 9 8 7 24 24 C 1.53037 * 109.45000 * 265.05714 * 6 5 2 25 25 H 1.09005 * 109.46846 * 308.37182 * 1 2 3 26 26 H 1.08994 * 109.47396 * 68.37356 * 1 2 3 27 27 H 1.08996 * 109.46963 * 188.37299 * 1 2 3 28 28 H 0.96994 * 120.00943 * 244.99884 * 5 2 1 29 29 H 1.09003 * 109.46094 * 25.02830 * 6 5 2 30 30 H 1.09005 * 109.49426 * 61.42396 * 7 6 5 31 31 H 1.08992 * 109.49752 * 301.32665 * 7 6 5 32 32 H 1.08999 * 109.58666 * 185.58022 * 8 7 6 33 33 H 1.08997 * 109.70153 * 65.22728 * 8 7 6 34 34 H 1.09002 * 109.47134 * 59.99751 * 13 10 9 35 35 H 1.08998 * 109.46953 * 300.00489 * 13 10 9 36 36 H 1.09002 * 109.47153 * 59.99820 * 14 13 10 37 37 H 1.09001 * 109.46832 * 300.00011 * 14 13 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.58474 * 65.92316 * 23 9 8 40 40 H 1.08997 * 109.58648 * 186.35716 * 23 9 8 41 41 H 1.09000 * 109.49856 * 298.57806 * 24 6 5 42 42 H 1.09010 * 109.49490 * 58.67505 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8909 -1.9706 1.8506 7 6 2.9976 -2.5515 2.7339 8 6 2.6591 -4.0048 3.0801 9 7 1.3203 -4.0478 3.6837 10 16 1.0802 -4.7723 5.1534 11 8 2.1250 -5.7308 5.2464 12 8 -0.2826 -5.1742 5.1275 13 6 1.3285 -3.4410 6.3602 14 6 1.1308 -3.9910 7.7742 15 6 1.3377 -2.8851 8.7768 16 1 1.5850 -1.8894 8.4393 17 6 1.2103 -3.1442 10.1251 18 7 0.9087 -4.3565 10.5360 19 14 1.4660 -1.7732 11.3678 20 1 0.1714 -1.0942 11.6291 21 1 1.9897 -2.3446 12.6345 22 1 2.4400 -0.7910 10.8279 23 6 0.1973 -3.4412 2.9557 24 6 0.5644 -1.9892 2.6136 25 1 -0.3633 0.6380 0.8057 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1496 28 1 2.6921 -0.0238 2.1256 29 1 1.7973 -2.5698 0.9448 30 1 3.0749 -1.9676 3.6512 31 1 3.9463 -2.5163 2.1986 32 1 3.3918 -4.3919 3.7882 33 1 2.6711 -4.6107 2.1741 34 1 0.6071 -2.6447 6.1764 35 1 2.3393 -3.0453 6.2618 36 1 1.8519 -4.7874 7.9583 37 1 0.1198 -4.3864 7.8722 38 1 0.8194 -4.5388 11.4846 39 1 0.0120 -4.0000 2.0385 40 1 -0.6947 -3.4562 3.5819 41 1 0.6647 -1.4106 3.5319 42 1 -0.2187 -1.5540 1.9925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115993767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:30 Heat of formation + Delta-G solvation = -151.677608 kcal Electronic energy + Delta-G solvation = -26433.058901 eV Core-core repulsion = 22474.216946 eV Total energy + Delta-G solvation = -3958.841955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.15236 -37.43090 -36.74340 -36.31455 -35.55628 -35.10550 -33.93860 -31.44693 -31.20959 -30.41755 -29.85024 -25.66721 -24.15912 -23.64462 -21.80384 -20.74424 -19.78219 -18.80101 -17.95707 -17.76898 -16.86213 -16.61810 -16.32521 -16.01942 -15.56136 -15.30878 -14.70525 -14.64797 -14.58590 -14.33000 -13.97038 -13.66850 -13.58956 -13.43823 -12.92801 -12.66388 -12.55406 -12.47531 -12.38599 -12.08057 -11.81837 -11.80712 -11.65663 -11.63665 -11.46958 -11.40306 -11.24378 -11.12370 -11.01374 -10.74561 -10.46130 -10.43041 -9.84338 -9.81027 -9.40820 -8.89388 -8.54777 -6.16818 -4.22696 -0.11836 0.67186 2.30497 2.91662 3.22513 3.29223 3.31485 3.41392 3.79492 4.19288 4.23649 4.33657 4.34331 4.38039 4.50530 4.54191 4.63912 4.83882 4.87401 4.92997 5.07187 5.17602 5.18441 5.35573 5.44118 5.49538 5.56077 5.59935 5.66896 5.70202 5.79747 6.01119 6.03323 6.42965 6.55156 6.60565 7.24778 7.30631 7.75822 8.12573 8.80688 9.42375 10.94148 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002983 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.532779 B = 9382.716911 C =10516.174629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.613 3.387 3 O -0.962 6.962 4 O -0.958 6.958 5 N -1.114 6.114 6 C 0.148 3.852 7 C -0.139 4.139 8 C 0.123 3.877 9 N -1.008 6.008 10 S 2.590 3.410 11 O -0.963 6.963 12 O -0.964 6.964 13 C -0.588 4.588 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.123 3.877 24 C -0.164 4.164 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.420 0.580 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 7.535 -21.239 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.826 4.826 2 S 2.705 3.295 3 O -0.952 6.952 4 O -0.947 6.947 5 N -0.873 5.873 6 C 0.041 3.959 7 C -0.179 4.179 8 C -0.003 4.003 9 N -0.844 5.844 10 S 2.688 3.312 11 O -0.953 6.953 12 O -0.954 6.954 13 C -0.722 4.722 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.003 4.003 24 C -0.205 4.205 25 H 0.150 0.850 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.254 0.746 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.269 6.634 -21.833 22.820 hybrid contribution -0.289 1.587 1.491 2.197 sum -0.558 8.221 -20.342 21.948 Atomic orbital electron populations 1.30659 1.28425 1.11840 1.11690 1.04716 0.77579 0.73788 0.73393 1.93626 1.77994 1.37778 1.85794 1.93625 1.76996 1.61842 1.62285 1.55661 1.73855 1.21394 1.36344 1.20845 0.94795 0.81188 0.99108 1.22216 0.98332 0.96888 1.00507 1.21365 0.83337 0.95642 0.99996 1.58059 1.13956 1.75390 1.37012 1.05776 0.74191 0.77112 0.74084 1.93540 1.58255 1.57847 1.85652 1.93537 1.35136 1.81050 1.85684 1.30492 1.10206 1.16768 1.14688 1.18963 0.98603 0.97680 0.85872 1.20986 1.49099 0.95362 0.90560 0.92085 1.25069 0.94900 0.95825 0.98675 1.69951 1.47383 1.19741 1.15710 0.86473 0.78482 0.81738 0.80608 1.20474 1.20983 1.19769 1.21423 0.89016 0.91777 0.98114 1.22760 0.97178 0.98228 1.02310 0.85003 0.85374 0.85108 0.74562 0.88602 0.90234 0.89672 0.88357 0.90814 0.86354 0.86290 0.94876 0.94909 0.92490 0.90912 0.88397 0.89776 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.43 10.00 101.05 1.01 -1.42 16 2 S 2.61 17.92 6.08 -107.50 -0.65 17.27 16 3 O -0.96 -10.10 18.08 -57.54 -1.04 -11.14 16 4 O -0.96 -10.02 17.39 -57.54 -1.00 -11.02 16 5 N -1.11 -6.68 5.36 -4.85 -0.03 -6.71 16 6 C 0.15 1.00 2.65 -67.89 -0.18 0.82 16 7 C -0.14 -1.05 5.61 -26.61 -0.15 -1.20 16 8 C 0.12 1.18 6.31 -3.71 -0.02 1.16 16 9 N -1.01 -11.67 3.21 -113.28 -0.36 -12.03 16 10 S 2.59 43.14 5.41 -107.50 -0.58 42.55 16 11 O -0.96 -18.80 16.72 -57.54 -0.96 -19.76 16 12 O -0.96 -18.65 16.72 -57.54 -0.96 -19.62 16 13 C -0.59 -10.45 6.12 37.16 0.23 -10.22 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 15 C -0.52 -13.96 9.11 -34.44 -0.31 -14.27 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 1.11 6.34 -3.48 -0.02 1.09 16 24 C -0.16 -1.08 5.67 -26.39 -0.15 -1.23 16 25 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.13 0.33 6.79 -51.93 -0.35 -0.03 16 28 H 0.42 2.11 8.80 -34.47 -0.30 1.81 16 29 H 0.10 0.61 7.48 -51.93 -0.39 0.22 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.01 7.10 -51.93 -0.37 0.64 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.94 7.09 -51.93 -0.37 0.58 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.31 5.75 -51.92 -0.30 0.01 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -39.32 363.99 -10.50 -49.82 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.27 Total: -2.11 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.35 Total: -43.99 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -3.96 Total: -61.53 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 61.06 SS G_CDS: -1.24 Total: 59.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.32 -10.50 -49.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115993767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.856 kcal (2) G-P(sol) polarization free energy of solvation -39.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds