Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 110.54226 * 2 1 4 4 O 1.42104 * 110.53997 * 223.25432 * 2 1 3 5 5 N 1.65594 * 104.45171 * 111.62406 * 2 1 3 6 6 C 1.46505 * 119.99561 * 65.00169 * 5 2 1 7 7 C 1.53045 * 109.45940 * 144.99645 * 6 5 2 8 8 C 1.53189 * 109.31267 * 181.36845 * 7 6 5 9 9 N 1.46923 * 108.77751 * 305.36979 * 8 7 6 10 10 S 1.65606 * 120.62889 * 233.58517 * 9 8 7 11 11 O 1.42094 * 104.27817 * 333.92814 * 10 9 8 12 12 O 1.42106 * 104.27580 * 206.07045 * 10 9 8 13 13 C 1.81396 * 104.45103 * 90.00030 * 10 9 8 14 14 C 1.52997 * 109.47360 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.46931 * 118.74107 * 53.86074 * 9 8 7 24 24 C 1.53037 * 109.45000 * 265.05714 * 6 5 2 25 25 H 1.09005 * 109.46846 * 308.37182 * 1 2 3 26 26 H 1.08994 * 109.47396 * 68.37356 * 1 2 3 27 27 H 1.08996 * 109.46963 * 188.37299 * 1 2 3 28 28 H 0.96994 * 120.00943 * 244.99884 * 5 2 1 29 29 H 1.09003 * 109.46094 * 25.02830 * 6 5 2 30 30 H 1.09005 * 109.49426 * 61.42396 * 7 6 5 31 31 H 1.08992 * 109.49752 * 301.32665 * 7 6 5 32 32 H 1.08999 * 109.58666 * 185.58022 * 8 7 6 33 33 H 1.08997 * 109.70153 * 65.22728 * 8 7 6 34 34 H 1.09002 * 109.47134 * 59.99751 * 13 10 9 35 35 H 1.08998 * 109.46953 * 300.00489 * 13 10 9 36 36 H 1.09002 * 109.47153 * 59.99820 * 14 13 10 37 37 H 1.09001 * 109.46832 * 300.00011 * 14 13 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.58474 * 65.92316 * 23 9 8 40 40 H 1.08997 * 109.58648 * 186.35716 * 23 9 8 41 41 H 1.09000 * 109.49856 * 298.57806 * 24 6 5 42 42 H 1.09010 * 109.49490 * 58.67505 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8909 -1.9706 1.8506 7 6 2.9976 -2.5515 2.7339 8 6 2.6591 -4.0048 3.0801 9 7 1.3203 -4.0478 3.6837 10 16 1.0802 -4.7723 5.1534 11 8 2.1250 -5.7308 5.2464 12 8 -0.2826 -5.1742 5.1275 13 6 1.3285 -3.4410 6.3602 14 6 1.1308 -3.9910 7.7742 15 6 1.3377 -2.8851 8.7768 16 1 1.5850 -1.8894 8.4393 17 6 1.2103 -3.1442 10.1251 18 7 0.9087 -4.3565 10.5360 19 14 1.4660 -1.7732 11.3678 20 1 0.1714 -1.0942 11.6291 21 1 1.9897 -2.3446 12.6345 22 1 2.4400 -0.7910 10.8279 23 6 0.1973 -3.4412 2.9557 24 6 0.5644 -1.9892 2.6136 25 1 -0.3633 0.6380 0.8057 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1496 28 1 2.6921 -0.0238 2.1256 29 1 1.7973 -2.5698 0.9448 30 1 3.0749 -1.9676 3.6512 31 1 3.9463 -2.5163 2.1986 32 1 3.3918 -4.3919 3.7882 33 1 2.6711 -4.6107 2.1741 34 1 0.6071 -2.6447 6.1764 35 1 2.3393 -3.0453 6.2618 36 1 1.8519 -4.7874 7.9583 37 1 0.1198 -4.3864 7.8722 38 1 0.8194 -4.5388 11.4846 39 1 0.0120 -4.0000 2.0385 40 1 -0.6947 -3.4562 3.5819 41 1 0.6647 -1.4106 3.5319 42 1 -0.2187 -1.5540 1.9925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115993767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -185.468746 kcal Electronic energy + Delta-G solvation = -26434.524194 eV Core-core repulsion = 22474.216946 eV Total energy + Delta-G solvation = -3960.307248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.80777 -38.19814 -38.08211 -36.99417 -36.95827 -35.89826 -35.78300 -33.10255 -32.08698 -31.06801 -30.18080 -27.57989 -24.92766 -24.29751 -23.51466 -21.50151 -20.36507 -19.85157 -19.17195 -18.52292 -18.34737 -17.35007 -17.20392 -17.06195 -16.95965 -16.52041 -15.88766 -15.71543 -15.31710 -15.14139 -14.87811 -14.62309 -14.45299 -14.04996 -13.89763 -13.80148 -13.69726 -13.49030 -13.17008 -13.14844 -13.06032 -12.92415 -12.88345 -12.78198 -12.77401 -12.49060 -12.23472 -12.17640 -12.10441 -12.10066 -11.78962 -11.73425 -11.38427 -11.09422 -10.64093 -10.31884 -9.92155 -8.25366 -6.39226 -0.67448 -0.60033 1.41501 1.42905 1.53928 1.77696 1.82527 2.38384 2.89898 2.95079 3.08244 3.20676 3.33433 3.61898 3.83531 3.95877 4.03586 4.10581 4.12972 4.19801 4.24038 4.28240 4.41482 4.47729 4.73403 4.77788 4.83194 4.86602 4.97785 5.05741 5.07296 5.25261 5.26263 5.29311 5.30619 5.47990 5.69381 5.72387 6.07304 6.18480 6.74859 7.31119 8.86803 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002983 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.532779 B = 9382.716911 C =10516.174629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.621 3.379 3 O -1.004 7.004 4 O -1.000 7.000 5 N -1.110 6.110 6 C 0.146 3.854 7 C -0.138 4.138 8 C 0.115 3.885 9 N -0.996 5.996 10 S 2.612 3.388 11 O -0.996 6.996 12 O -0.994 6.994 13 C -0.587 4.587 14 C 0.020 3.980 15 C -0.536 4.536 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.257 1.257 23 C 0.110 3.890 24 C -0.162 4.162 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.424 0.576 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 9.776 -22.607 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.717 3.283 3 O -0.995 6.995 4 O -0.990 6.990 5 N -0.868 5.868 6 C 0.039 3.961 7 C -0.179 4.179 8 C -0.011 4.011 9 N -0.835 5.835 10 S 2.710 3.290 11 O -0.987 6.987 12 O -0.984 6.984 13 C -0.718 4.718 14 C -0.019 4.019 15 C -0.575 4.575 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.181 1.181 23 C -0.015 4.015 24 C -0.203 4.203 25 H 0.169 0.831 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.260 0.740 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.842 8.893 -23.198 24.858 hybrid contribution -0.146 0.861 1.807 2.007 sum -0.989 9.754 -21.390 23.530 Atomic orbital electron populations 1.30498 1.23503 1.13771 1.13538 1.04233 0.79114 0.72166 0.72753 1.93570 1.80022 1.39591 1.86272 1.93571 1.79115 1.62575 1.63731 1.55432 1.74348 1.21204 1.35844 1.20865 0.94543 0.81431 0.99292 1.22212 0.99226 0.95358 1.01056 1.21607 0.81814 0.97543 1.00098 1.57640 1.15801 1.75274 1.34799 1.04748 0.72840 0.76566 0.74813 1.93490 1.59173 1.59375 1.86616 1.93490 1.36694 1.81675 1.86519 1.30391 1.12278 1.18014 1.11151 1.18813 0.96102 0.96854 0.90109 1.21518 1.48234 0.96441 0.91334 0.90537 1.26108 0.94596 0.98340 1.01213 1.70102 1.48946 1.22226 1.16185 0.85335 0.78909 0.78599 0.77555 1.19587 1.21059 1.18107 1.21787 0.87731 0.93619 0.98365 1.22795 0.97983 0.96457 1.03045 0.83094 0.83813 0.83161 0.74022 0.87841 0.89973 0.88724 0.89425 0.89186 0.83953 0.84211 0.97817 0.97668 0.92448 0.88786 0.89046 0.89650 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.96 10.00 113.37 1.13 -0.83 16 2 S 2.62 30.66 6.08 -56.49 -0.34 30.32 16 3 O -1.00 -20.07 18.08 -127.65 -2.31 -22.38 16 4 O -1.00 -19.59 17.39 -127.65 -2.22 -21.81 16 5 N -1.11 -10.46 5.36 -169.26 -0.91 -11.37 16 6 C 0.15 1.51 2.65 45.02 0.12 1.63 16 7 C -0.14 -1.75 5.61 30.67 0.17 -1.58 16 8 C 0.11 2.00 6.31 86.36 0.55 2.55 16 9 N -1.00 -21.37 3.21 -512.30 -1.65 -23.01 16 10 S 2.61 87.08 5.41 -56.49 -0.31 86.78 16 11 O -1.00 -39.73 16.72 -127.65 -2.13 -41.86 16 12 O -0.99 -38.80 16.72 -127.65 -2.13 -40.94 16 13 C -0.59 -20.63 6.12 71.98 0.44 -20.19 16 14 C 0.02 1.02 4.98 29.85 0.15 1.17 16 15 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 16 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 18 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 19 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 C 0.11 1.68 6.34 86.51 0.55 2.23 16 24 C -0.16 -1.52 5.67 30.82 0.17 -1.35 16 25 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.15 -0.04 6.79 -2.39 -0.02 -0.06 16 28 H 0.42 3.34 8.80 -96.75 -0.85 2.49 16 29 H 0.10 0.96 7.48 -2.39 -0.02 0.94 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.74 7.10 -2.39 -0.02 1.72 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.14 4.24 8.14 -2.39 -0.02 4.23 16 35 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 37 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.56 7.09 -2.39 -0.02 1.54 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.34 5.75 -2.38 -0.01 0.32 16 Total: -1.00 -87.96 363.99 -5.53 -93.49 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.18 Total: 7.08 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 3.98 Total: -44.79 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -2.27 Total: -90.28 kcal Atomic # 8 Polarization: -118.19 SS G_CDS: -8.80 Total: -126.99 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 117.74 SS G_CDS: -0.65 Total: 117.09 kcal Total: -87.96 -5.53 -93.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115993767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.979 kcal (2) G-P(sol) polarization free energy of solvation -87.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds