Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47473 * 2 1 4 4 C 1.34808 * 117.00177 * 179.97438 * 3 2 1 5 5 O 1.21566 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.46989 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.40032 * 120.92229 * 354.26829 * 6 4 3 8 8 N 1.31956 * 119.07526 * 179.76297 * 7 6 4 9 9 C 1.32855 * 121.13204 * 0.52053 * 8 7 6 10 10 S 1.76201 * 118.97437 * 179.70427 * 9 8 7 11 11 C 1.81001 * 100.00003 * 0.02562 * 10 9 8 12 12 C 1.50705 * 109.46924 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99676 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99905 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99676 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46480 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00392 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99521 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00312 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47065 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47219 * 119.99830 * 20 18 16 23 23 H 1.48501 * 109.47085 * 239.99496 * 20 18 16 24 24 N 1.32548 * 122.04556 * 359.73091 * 9 8 7 25 25 C 1.32749 * 120.78232 * 359.97438 * 24 9 8 26 26 N 1.37859 * 120.59543 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47234 * 300.00508 * 1 2 3 29 29 H 1.09003 * 109.46500 * 60.00366 * 1 2 3 30 30 H 1.09003 * 109.47234 * 239.99492 * 2 1 3 31 31 H 1.09009 * 109.46932 * 119.99745 * 2 1 3 32 32 H 1.07998 * 120.45718 * 0.02562 * 7 6 4 33 33 H 1.08997 * 109.47528 * 299.99732 * 11 10 9 34 34 H 1.08997 * 109.46835 * 60.00109 * 11 10 9 35 35 H 0.97000 * 119.99854 * 0.02562 * 14 12 11 36 36 H 1.08997 * 109.46913 * 299.99962 * 15 14 12 37 37 H 1.08993 * 109.46901 * 60.00342 * 15 14 12 38 38 H 0.96992 * 120.00242 * 180.02562 * 19 18 16 39 39 H 0.97001 * 119.99706 * 185.47727 * 26 25 24 40 40 H 0.97002 * 120.00233 * 5.47345 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3506 1.5455 0.0005 5 8 4.0910 0.5814 0.0005 6 6 3.9124 2.9038 0.0000 7 6 3.0829 4.0255 -0.1210 8 7 3.6257 5.2283 -0.1125 9 6 4.9399 5.3880 -0.0018 10 16 5.6046 7.0198 -0.0045 11 6 4.0799 7.9800 -0.1755 12 6 4.4121 9.4498 -0.2009 13 8 5.5661 9.8123 -0.1126 14 7 3.4267 10.3614 -0.3218 15 6 3.7497 11.7901 -0.3470 16 6 2.4800 12.5896 -0.4880 17 1 1.5279 12.0841 -0.5528 18 6 2.5342 13.9665 -0.5354 19 7 3.6937 14.5822 -0.4570 20 14 0.9605 14.9576 -0.7109 21 1 -0.2008 14.0346 -0.7784 22 1 0.8098 15.8587 0.4599 23 1 1.0216 15.7674 -1.9541 24 7 5.7666 4.3580 0.1102 25 6 5.3046 3.1135 0.1162 26 7 6.1678 2.0451 0.2333 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.0135 3.9080 -0.2157 33 1 3.5790 7.7044 -1.1035 34 1 3.4224 7.7710 0.6683 35 1 2.5037 10.0714 -0.3920 36 1 4.2511 12.0657 0.5808 37 1 4.4068 11.9991 -1.1911 38 1 3.7317 15.5508 -0.4899 39 1 5.8308 1.1387 0.1571 40 1 7.1122 2.1997 0.3919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024793682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -77.352292 kcal Electronic energy + Delta-G solvation = -25282.653221 eV Core-core repulsion = 21223.883054 eV Total energy + Delta-G solvation = -4058.770167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51899 -40.25807 -38.86739 -37.33279 -35.75796 -34.31238 -33.40596 -32.44706 -32.25520 -31.09180 -29.96597 -26.91531 -26.12728 -24.25227 -23.51458 -22.65048 -21.98101 -20.07358 -19.10412 -18.84177 -18.04116 -17.34649 -17.12991 -17.04393 -16.24479 -15.86381 -15.79377 -15.60982 -15.13347 -15.08851 -14.43507 -14.39462 -14.27435 -14.12074 -13.57089 -13.27455 -12.99506 -12.76504 -12.49664 -12.31417 -12.21104 -12.02030 -11.97580 -11.67418 -11.03928 -11.01767 -10.93603 -10.86240 -10.78870 -10.45701 -10.35225 -9.65376 -9.43156 -9.32337 -9.00691 -8.79727 -8.05173 -7.87792 -6.20067 -4.27355 0.02019 0.98222 1.05636 1.98497 2.03332 2.15887 3.01860 3.14295 3.22131 3.29370 3.32258 3.41541 3.90655 3.98348 4.23143 4.25884 4.33285 4.44087 4.47973 4.56584 4.77136 4.95425 5.15500 5.17826 5.22281 5.27330 5.28686 5.47934 5.50201 5.69507 5.92659 6.33084 6.73657 7.13578 7.21574 7.28530 7.34228 7.45295 7.59561 7.73951 7.91507 8.47328 8.68370 8.93636 9.39067 10.90071 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.001954 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.659971 B =14324.424872 C =15949.666537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.540 3.460 5 O -0.528 6.528 6 C -0.336 4.336 7 C 0.264 3.736 8 N -0.574 5.574 9 C 0.349 3.651 10 S 0.120 5.880 11 C -0.156 4.156 12 C 0.514 3.486 13 O -0.543 6.543 14 N -0.701 5.701 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 N -0.568 5.568 25 C 0.509 3.491 26 N -0.810 5.810 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.182 0.818 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.394 0.606 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.426 0.574 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -30.544 1.063 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.267 6.267 4 C 0.387 3.613 5 O -0.420 6.420 6 C -0.352 4.352 7 C 0.092 3.908 8 N -0.296 5.296 9 C -0.025 4.025 10 S 0.358 5.642 11 C -0.308 4.308 12 C 0.296 3.704 13 O -0.422 6.422 14 N -0.349 5.349 15 C 0.128 3.872 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 N -0.298 5.298 25 C 0.256 3.744 26 N -0.360 5.360 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.199 0.801 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.227 0.773 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.269 0.731 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.574 -29.001 1.209 29.069 hybrid contribution -2.676 -1.396 -0.197 3.025 sum -4.250 -30.396 1.012 30.709 Atomic orbital electron populations 1.21830 0.92291 1.03186 1.03832 1.23086 0.95539 0.79555 1.02784 1.86550 1.23140 1.32819 1.84181 1.20372 0.80671 0.88580 0.71685 1.90531 1.59624 1.42597 1.49207 1.19856 0.93865 0.93056 1.28445 1.23413 1.00445 0.85667 0.81232 1.69004 1.11350 1.25624 1.23645 1.25809 0.88296 1.00365 0.87996 1.86831 1.06676 0.85165 1.85516 1.23944 1.01080 0.96584 1.09181 1.19546 0.86467 0.85963 0.78414 1.90722 1.19574 1.80995 1.50958 1.46379 1.08672 1.08935 1.70953 1.19203 0.97015 0.72882 0.98058 1.21245 0.92632 0.91596 1.52802 0.91704 1.24958 0.96737 0.97666 0.94676 1.69979 1.24101 1.09433 1.48646 0.86343 0.82673 0.79959 0.77827 1.19600 1.20783 1.20790 1.68205 1.37956 0.96757 1.26843 1.18302 0.86198 0.87498 0.82421 1.43052 1.10760 1.07616 1.74574 0.90064 0.91262 0.91241 0.91010 0.91035 0.80096 0.85848 0.85848 0.77256 0.95197 0.95197 0.92430 0.73114 0.76232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.29 37.16 0.38 -0.20 16 2 C 0.06 0.37 6.20 37.16 0.23 0.60 16 3 O -0.35 -2.83 9.57 -40.79 -0.39 -3.22 16 4 C 0.54 5.24 7.88 34.28 0.27 5.51 16 5 O -0.53 -5.58 13.59 -19.32 -0.26 -5.85 16 6 C -0.34 -3.51 5.92 -104.53 -0.62 -4.13 16 7 C 0.26 2.60 10.89 -16.83 -0.18 2.42 16 8 N -0.57 -6.88 9.08 -13.08 -0.12 -6.99 16 9 C 0.35 4.69 7.85 -90.59 -0.71 3.98 16 10 S 0.12 1.74 21.38 -107.50 -2.30 -0.55 16 11 C -0.16 -2.16 5.28 36.01 0.19 -1.97 16 12 C 0.51 9.74 7.85 -10.98 -0.09 9.65 16 13 O -0.54 -12.49 15.86 5.56 0.09 -12.41 16 14 N -0.70 -14.01 5.55 -61.47 -0.34 -14.35 16 15 C 0.25 6.38 5.43 -5.19 -0.03 6.36 16 16 C -0.54 -14.37 9.28 -34.44 -0.32 -14.69 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.88 -25.62 13.29 55.43 0.74 -24.88 16 20 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.57 -7.48 10.41 -12.39 -0.13 -7.61 16 25 C 0.51 5.80 7.83 -155.01 -1.21 4.59 16 26 N -0.81 -7.13 8.93 31.40 0.28 -6.85 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.18 1.23 7.71 -52.49 -0.40 0.82 16 33 H 0.12 1.50 8.11 -51.92 -0.42 1.07 16 34 H 0.12 1.49 8.11 -51.92 -0.42 1.07 16 35 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.43 3.66 5.50 -40.82 -0.22 3.43 16 40 H 0.41 2.86 8.95 -40.82 -0.37 2.49 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -33.14 368.25 -8.76 -41.90 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.67 Total: 6.05 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -2.19 Total: 13.75 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.43 Total: -60.69 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.56 Total: -21.47 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.30 Total: -0.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.14 -8.76 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024793682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.450 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds