Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47473 * 2 1 4 4 C 1.34808 * 117.00177 * 179.97438 * 3 2 1 5 5 O 1.21566 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.46989 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.40032 * 120.92229 * 354.26829 * 6 4 3 8 8 N 1.31956 * 119.07526 * 179.76297 * 7 6 4 9 9 C 1.32855 * 121.13204 * 0.52053 * 8 7 6 10 10 S 1.76201 * 118.97437 * 179.70427 * 9 8 7 11 11 C 1.81001 * 100.00003 * 0.02562 * 10 9 8 12 12 C 1.50705 * 109.46924 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99676 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99905 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99676 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46480 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00392 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99521 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00312 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47065 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47219 * 119.99830 * 20 18 16 23 23 H 1.48501 * 109.47085 * 239.99496 * 20 18 16 24 24 N 1.32548 * 122.04556 * 359.73091 * 9 8 7 25 25 C 1.32749 * 120.78232 * 359.97438 * 24 9 8 26 26 N 1.37859 * 120.59543 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47234 * 300.00508 * 1 2 3 29 29 H 1.09003 * 109.46500 * 60.00366 * 1 2 3 30 30 H 1.09003 * 109.47234 * 239.99492 * 2 1 3 31 31 H 1.09009 * 109.46932 * 119.99745 * 2 1 3 32 32 H 1.07998 * 120.45718 * 0.02562 * 7 6 4 33 33 H 1.08997 * 109.47528 * 299.99732 * 11 10 9 34 34 H 1.08997 * 109.46835 * 60.00109 * 11 10 9 35 35 H 0.97000 * 119.99854 * 0.02562 * 14 12 11 36 36 H 1.08997 * 109.46913 * 299.99962 * 15 14 12 37 37 H 1.08993 * 109.46901 * 60.00342 * 15 14 12 38 38 H 0.96992 * 120.00242 * 180.02562 * 19 18 16 39 39 H 0.97001 * 119.99706 * 185.47727 * 26 25 24 40 40 H 0.97002 * 120.00233 * 5.47345 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3506 1.5455 0.0005 5 8 4.0910 0.5814 0.0005 6 6 3.9124 2.9038 0.0000 7 6 3.0829 4.0255 -0.1210 8 7 3.6257 5.2283 -0.1125 9 6 4.9399 5.3880 -0.0018 10 16 5.6046 7.0198 -0.0045 11 6 4.0799 7.9800 -0.1755 12 6 4.4121 9.4498 -0.2009 13 8 5.5661 9.8123 -0.1126 14 7 3.4267 10.3614 -0.3218 15 6 3.7497 11.7901 -0.3470 16 6 2.4800 12.5896 -0.4880 17 1 1.5279 12.0841 -0.5528 18 6 2.5342 13.9665 -0.5354 19 7 3.6937 14.5822 -0.4570 20 14 0.9605 14.9576 -0.7109 21 1 -0.2008 14.0346 -0.7784 22 1 0.8098 15.8587 0.4599 23 1 1.0216 15.7674 -1.9541 24 7 5.7666 4.3580 0.1102 25 6 5.3046 3.1135 0.1162 26 7 6.1678 2.0451 0.2333 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.0135 3.9080 -0.2157 33 1 3.5790 7.7044 -1.1035 34 1 3.4224 7.7710 0.6683 35 1 2.5037 10.0714 -0.3920 36 1 4.2511 12.0657 0.5808 37 1 4.4068 11.9991 -1.1911 38 1 3.7317 15.5508 -0.4899 39 1 5.8308 1.1387 0.1571 40 1 7.1122 2.1997 0.3919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024793682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -101.022752 kcal Electronic energy + Delta-G solvation = -25283.679649 eV Core-core repulsion = 21223.883054 eV Total energy + Delta-G solvation = -4059.796595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33352 -41.01457 -40.51773 -38.02994 -36.55213 -36.18936 -34.39150 -34.24759 -32.81049 -31.92305 -31.28072 -28.76725 -27.01199 -25.05142 -24.58860 -24.09309 -22.65056 -21.67796 -20.16262 -19.66366 -18.92267 -18.68546 -18.04708 -17.68218 -17.54856 -17.45335 -16.81400 -16.78491 -16.56980 -16.22806 -15.88984 -15.27893 -15.04561 -14.99734 -14.62147 -14.53031 -14.30063 -13.98448 -13.58437 -13.53191 -13.13868 -13.02306 -12.94300 -12.81737 -12.73387 -12.48126 -12.20235 -11.82494 -11.68884 -11.52322 -11.43468 -11.37692 -11.01385 -10.80469 -10.53362 -9.90449 -9.80324 -8.98825 -8.27068 -6.43076 -0.84123 -0.09592 0.21501 0.90853 1.25023 1.46359 1.46790 1.51036 1.60400 1.60648 2.22452 2.31915 2.52769 2.54781 3.08434 3.17680 3.35279 3.56336 3.78182 3.81714 4.05669 4.09227 4.09509 4.23771 4.39186 4.39764 4.82421 4.95812 4.97450 5.12449 5.13908 5.26431 5.37738 5.46637 5.49259 5.66027 5.85755 5.98284 6.38918 6.59683 6.66893 6.78638 6.91403 7.23661 7.39474 8.85143 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.001954 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.659971 B =14324.424872 C =15949.666537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.542 3.458 5 O -0.539 6.539 6 C -0.336 4.336 7 C 0.267 3.733 8 N -0.578 5.578 9 C 0.347 3.653 10 S 0.079 5.921 11 C -0.132 4.132 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.695 5.695 15 C 0.265 3.735 16 C -0.554 4.554 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.585 5.585 25 C 0.496 3.504 26 N -0.798 5.798 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.215 0.785 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.413 0.587 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.268 0.732 39 H 0.429 0.571 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 -32.577 0.892 33.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.265 6.265 4 C 0.390 3.610 5 O -0.432 6.432 6 C -0.352 4.352 7 C 0.098 3.902 8 N -0.300 5.300 9 C -0.028 4.028 10 S 0.316 5.684 11 C -0.283 4.283 12 C 0.299 3.701 13 O -0.469 6.469 14 N -0.345 5.345 15 C 0.142 3.858 16 C -0.592 4.592 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.175 1.175 22 H -0.206 1.206 23 H -0.207 1.207 24 N -0.315 5.315 25 C 0.242 3.758 26 N -0.348 5.348 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.231 0.769 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.250 0.750 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.077 0.923 39 H 0.272 0.728 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.719 -31.128 1.039 31.501 hybrid contribution -1.671 -0.970 -0.131 1.937 sum -6.389 -32.099 0.908 32.741 Atomic orbital electron populations 1.21849 0.90544 1.04401 1.03850 1.23359 0.96869 0.78430 1.03003 1.86544 1.21947 1.34290 1.83682 1.20239 0.81248 0.88055 0.71488 1.90527 1.60078 1.42848 1.49733 1.19991 0.93595 0.93859 1.27716 1.23924 1.01735 0.84689 0.79887 1.69008 1.10435 1.26609 1.23996 1.25449 0.88958 0.99499 0.88875 1.87004 1.07645 0.86919 1.86818 1.23704 1.01049 0.92034 1.11501 1.20304 0.85365 0.87945 0.76510 1.90706 1.21543 1.82272 1.52404 1.46049 1.10093 1.06978 1.71386 1.18635 0.96298 0.76261 0.94603 1.21654 0.93362 0.92057 1.52093 0.89531 1.26050 1.00400 0.99145 0.94071 1.70138 1.26944 1.09875 1.49962 0.85121 0.78434 0.78185 0.77535 1.17489 1.20636 1.20652 1.68120 1.38583 0.97392 1.27433 1.18522 0.87126 0.87365 0.82767 1.43044 1.11053 1.07169 1.73530 0.88271 0.91257 0.91154 0.90813 0.90877 0.76868 0.83362 0.83357 0.75031 0.98959 0.98959 0.92299 0.72796 0.75327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 71.98 0.74 0.00 16 2 C 0.06 0.53 6.20 71.98 0.45 0.98 16 3 O -0.35 -4.79 9.57 -57.20 -0.55 -5.34 16 4 C 0.54 9.45 7.88 70.12 0.55 10.00 16 5 O -0.54 -10.52 13.59 19.62 0.27 -10.26 16 6 C -0.34 -6.36 5.92 -19.80 -0.12 -6.48 16 7 C 0.27 4.56 10.89 85.11 0.93 5.49 16 8 N -0.58 -12.55 9.08 -195.31 -1.77 -14.32 16 9 C 0.35 8.95 7.85 180.34 1.42 10.37 16 10 S 0.08 2.28 21.38 -56.49 -1.21 1.07 16 11 C -0.13 -3.46 5.28 71.24 0.38 -3.09 16 12 C 0.51 19.55 7.85 87.66 0.69 20.24 16 13 O -0.59 -28.02 15.86 -3.03 -0.05 -28.07 16 14 N -0.70 -27.75 5.55 -466.78 -2.59 -30.34 16 15 C 0.26 14.05 5.43 85.63 0.46 14.52 16 16 C -0.55 -29.20 9.28 25.60 0.24 -28.97 16 17 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 20 Si 0.98 41.52 29.54 68.60 2.03 43.55 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 N -0.59 -14.98 10.41 -193.10 -2.01 -16.99 16 25 C 0.50 10.70 7.83 133.88 1.05 11.75 16 26 N -0.80 -13.21 8.93 -54.58 -0.49 -13.69 16 27 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.21 2.10 7.71 -2.91 -0.02 2.08 16 33 H 0.15 3.21 8.11 -2.40 -0.02 3.19 16 34 H 0.15 3.21 8.11 -2.40 -0.02 3.19 16 35 H 0.41 13.22 8.32 -92.71 -0.77 12.44 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.43 6.84 5.50 -92.71 -0.51 6.33 16 40 H 0.42 5.49 8.95 -92.71 -0.83 4.66 16 Total: -1.00 -73.91 368.25 0.18 -73.74 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.98 Total: 20.23 kcal Atomic # 6 Polarization: 28.20 SS G_CDS: 7.24 Total: 35.44 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -6.58 Total: -130.37 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.33 Total: -43.66 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.21 Total: 1.07 kcal Total: -73.91 0.18 -73.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024793682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.286 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds