Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34712 * 117.00159 * 89.99921 * 4 2 1 6 6 O 1.21484 * 120.00296 * 359.97438 * 5 4 2 7 7 C 1.47678 * 120.00284 * 179.97438 * 5 4 2 8 8 C 1.39688 * 120.10219 * 359.97438 * 7 5 4 9 9 C 1.37928 * 120.00889 * 179.97438 * 8 7 5 10 10 C 1.38373 * 120.22008 * 0.02562 * 9 8 7 11 11 Cl 1.73604 * 119.89744 * 180.02562 * 10 9 8 12 12 C 1.39132 * 120.20939 * 0.02562 * 10 9 8 13 13 N 1.39783 * 120.00387 * 179.97438 * 12 10 9 14 14 C 1.38574 * 119.98806 * 359.72811 * 12 10 9 15 15 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 16 16 O 1.21283 * 119.99993 * 106.83559 * 15 2 1 17 17 N 1.34777 * 120.00459 * 286.83956 * 15 2 1 18 18 C 1.46500 * 119.99806 * 4.66120 * 17 15 2 19 19 C 1.46495 * 119.99998 * 184.38220 * 17 15 2 20 20 C 1.50704 * 109.47321 * 270.27431 * 19 17 15 21 21 H 1.07999 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99771 * 179.97438 * 20 19 17 23 23 N 1.31510 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47399 * 59.99985 * 24 22 20 26 26 H 1.48505 * 109.46978 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47142 * 299.99864 * 24 22 20 28 28 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 29 29 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 30 30 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 31 31 H 1.08002 * 119.99259 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.88788 * 180.02562 * 9 8 7 33 33 H 0.96997 * 120.00182 * 0.02562 * 13 12 10 34 34 H 0.97001 * 119.99644 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.10566 * 180.27572 * 14 12 10 36 36 H 1.08995 * 109.47190 * 266.44608 * 18 17 15 37 37 H 1.09003 * 109.47306 * 26.44211 * 18 17 15 38 38 H 1.09001 * 109.47589 * 146.44208 * 18 17 15 39 39 H 1.08990 * 109.47257 * 30.27698 * 19 17 15 40 40 H 1.09005 * 109.47230 * 150.27868 * 19 17 15 41 41 H 0.96992 * 120.00645 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0667 -2.2851 6 8 1.9969 1.2609 -2.2545 7 6 2.7099 -0.5614 -3.5278 8 6 2.9653 -1.9343 -3.5653 9 6 3.4243 -2.5190 -4.7271 10 6 3.6341 -1.7500 -5.8581 11 17 4.2114 -2.4948 -7.3162 12 6 3.3838 -0.3816 -5.8306 13 7 3.5977 0.3913 -6.9755 14 6 2.9175 0.2140 -4.6695 15 6 2.0324 -0.7102 1.2304 16 8 2.5214 -1.8160 1.1352 17 7 1.9383 -0.1168 2.4369 18 6 1.2564 1.1733 2.5673 19 6 2.5127 -0.7646 3.6186 20 6 1.4795 -1.6600 4.2526 21 1 0.4938 -1.7390 3.8184 22 6 1.7931 -2.3792 5.3864 23 7 2.9935 -2.2835 5.9149 24 14 0.5127 -3.4897 6.1718 25 1 0.0899 -4.5256 5.1954 26 1 1.0949 -4.1463 7.3699 27 1 -0.6648 -2.6796 6.5751 28 1 -0.3633 0.6630 -0.7852 29 1 -0.3633 -1.0115 -0.1815 30 1 -0.3633 0.3485 0.9668 31 1 2.8032 -2.5379 -2.6845 32 1 3.6207 -3.5807 -4.7541 33 1 3.9203 -0.0264 -7.7894 34 1 3.4235 1.3453 -6.9561 35 1 2.7184 1.2752 -4.6473 36 1 1.9862 1.9793 2.4923 37 1 0.5184 1.2762 1.7718 38 1 0.7571 1.2241 3.5349 39 1 3.3768 -1.3594 3.3230 40 1 2.8230 -0.0040 4.3351 41 1 3.2142 -2.7897 6.7123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052413980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -90.335749 kcal Electronic energy + Delta-G solvation = -26523.328176 eV Core-core repulsion = 22429.658546 eV Total energy + Delta-G solvation = -4093.669630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86556 -39.67191 -38.78670 -36.84225 -36.36977 -35.03133 -34.90531 -32.88663 -31.82919 -31.13421 -29.11632 -27.71653 -26.21481 -25.18833 -23.99440 -22.80063 -22.46295 -20.87240 -18.93901 -18.47815 -17.56154 -17.12735 -16.63354 -16.54748 -16.29680 -16.04625 -15.64186 -15.10179 -14.60310 -14.56909 -14.36262 -14.18784 -14.16834 -13.62788 -13.24926 -12.90531 -12.65309 -12.51715 -12.17993 -12.07613 -12.05229 -11.99133 -11.64250 -11.37309 -11.24469 -11.20029 -11.12123 -10.89857 -10.75015 -10.66835 -10.54996 -10.16672 -9.66938 -9.26675 -8.91176 -8.44566 -8.03325 -7.72816 -6.05543 -4.10478 0.28168 1.09032 1.72855 2.30285 2.37195 3.23374 3.31926 3.34755 3.36399 3.40246 3.42953 3.86254 4.35029 4.43000 4.50895 4.80318 4.84505 4.91271 4.98310 5.07706 5.10629 5.28944 5.39563 5.41030 5.49445 5.65141 5.72456 5.87896 5.89230 6.02210 6.06517 6.24232 6.25648 6.34336 6.87297 6.97864 7.23688 7.37910 7.45441 7.64101 7.90010 8.19862 8.28809 8.84106 8.98647 9.54364 11.02645 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.002238 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.510683 B =12506.930251 C =13370.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.317 6.317 5 C 0.508 3.492 6 O -0.506 6.506 7 C -0.068 4.068 8 C -0.103 4.103 9 C -0.074 4.074 10 C -0.086 4.086 11 Cl -0.067 7.067 12 C 0.215 3.785 13 N -0.871 5.871 14 C -0.124 4.124 15 C 0.508 3.492 16 O -0.516 6.516 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.247 3.753 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.402 0.598 34 H 0.404 0.596 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 6.884 -25.251 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.122 0.878 4 O -0.232 6.232 5 C 0.353 3.647 6 O -0.395 6.395 7 C -0.070 4.070 8 C -0.123 4.123 9 C -0.093 4.093 10 C -0.118 4.118 11 Cl -0.039 7.039 12 C 0.109 3.891 13 N -0.411 5.411 14 C -0.147 4.147 15 C 0.292 3.708 16 O -0.392 6.392 17 N -0.330 5.330 18 C -0.078 4.078 19 C 0.129 3.871 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.233 0.767 34 H 0.233 0.767 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.592 6.488 -25.177 26.006 hybrid contribution -0.611 -0.254 0.153 0.679 sum -1.203 6.234 -25.024 25.817 Atomic orbital electron populations 1.22335 0.92225 1.04220 1.04162 1.22693 0.95982 0.97455 0.82559 0.87752 1.86673 1.76390 1.40800 1.19350 1.21140 0.74421 0.85036 0.84136 1.90809 1.48436 1.15861 1.84439 1.18892 1.02928 0.94177 0.90961 1.21380 0.98622 0.93565 0.98755 1.20874 0.97521 1.00454 0.90415 1.20662 1.09645 0.91551 0.89912 1.98353 1.87518 1.81930 1.36067 1.17187 0.94914 0.88874 0.88113 1.42508 1.76303 1.10781 1.11551 1.20562 1.03369 1.00742 0.90041 1.19750 0.80801 0.86515 0.83772 1.90709 1.44237 1.18631 1.85579 1.48076 1.55785 1.20851 1.08270 1.22000 0.96930 0.85384 1.03477 1.19341 0.94712 0.92898 0.80159 1.21370 0.98743 1.26200 1.10268 0.92408 1.24935 0.95590 0.96689 0.96877 1.69913 1.19480 1.41979 1.22004 0.86546 0.81337 0.80862 0.78598 1.20119 1.21180 1.20252 0.91132 0.90513 0.88940 0.83020 0.83889 0.76749 0.76718 0.83688 0.93338 0.91442 0.90321 0.93807 0.94610 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.09 37.16 0.34 -1.99 16 2 C 0.07 1.17 2.17 -27.88 -0.06 1.11 16 3 H 0.10 1.58 6.75 -51.92 -0.35 1.23 16 4 O -0.32 -5.23 8.69 -47.10 -0.41 -5.64 16 5 C 0.51 7.40 7.87 34.59 0.27 7.67 16 6 O -0.51 -7.84 15.60 -19.25 -0.30 -8.14 16 7 C -0.07 -0.82 5.87 -105.00 -0.62 -1.43 16 8 C -0.10 -1.14 9.61 -39.15 -0.38 -1.52 16 9 C -0.07 -0.69 9.80 -39.65 -0.39 -1.08 16 10 C -0.09 -0.79 6.34 -39.20 -0.25 -1.04 16 11 Cl -0.07 -0.53 27.57 -51.86 -1.43 -1.96 16 12 C 0.22 1.89 6.75 -83.78 -0.57 1.33 16 13 N -0.87 -5.19 9.04 32.41 0.29 -4.90 16 14 C -0.12 -1.25 9.44 -38.96 -0.37 -1.62 16 15 C 0.51 10.75 7.00 -10.99 -0.08 10.67 16 16 O -0.52 -13.22 16.18 -13.73 -0.22 -13.45 16 17 N -0.60 -12.56 2.86 -182.96 -0.52 -13.08 16 18 C 0.07 1.02 9.85 59.85 0.59 1.61 16 19 C 0.25 6.42 5.14 -5.19 -0.03 6.39 16 20 C -0.53 -14.78 9.38 -34.44 -0.32 -15.10 16 21 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 24 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.17 5.49 -51.93 -0.28 0.89 16 31 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.40 2.05 7.49 -40.82 -0.31 1.75 16 34 H 0.40 1.63 8.84 -40.82 -0.36 1.27 16 35 H 0.15 1.33 7.65 -52.49 -0.40 0.93 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.86 4.14 -51.93 -0.21 0.64 16 38 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.04 1.28 7.49 -51.93 -0.39 0.89 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -34.22 368.10 -8.06 -42.28 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.78 Total: 1.70 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.95 Total: 6.64 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.51 Total: -43.66 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.93 Total: -27.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.22 -8.06 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.061 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds