Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34712 * 117.00159 * 89.99921 * 4 2 1 6 6 O 1.21484 * 120.00296 * 359.97438 * 5 4 2 7 7 C 1.47678 * 120.00284 * 179.97438 * 5 4 2 8 8 C 1.39688 * 120.10219 * 359.97438 * 7 5 4 9 9 C 1.37928 * 120.00889 * 179.97438 * 8 7 5 10 10 C 1.38373 * 120.22008 * 0.02562 * 9 8 7 11 11 Cl 1.73604 * 119.89744 * 180.02562 * 10 9 8 12 12 C 1.39132 * 120.20939 * 0.02562 * 10 9 8 13 13 N 1.39783 * 120.00387 * 179.97438 * 12 10 9 14 14 C 1.38574 * 119.98806 * 359.72811 * 12 10 9 15 15 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 16 16 O 1.21283 * 119.99993 * 106.83559 * 15 2 1 17 17 N 1.34777 * 120.00459 * 286.83956 * 15 2 1 18 18 C 1.46500 * 119.99806 * 4.66120 * 17 15 2 19 19 C 1.46495 * 119.99998 * 184.38220 * 17 15 2 20 20 C 1.50704 * 109.47321 * 270.27431 * 19 17 15 21 21 H 1.07999 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99771 * 179.97438 * 20 19 17 23 23 N 1.31510 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47399 * 59.99985 * 24 22 20 26 26 H 1.48505 * 109.46978 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47142 * 299.99864 * 24 22 20 28 28 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 29 29 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 30 30 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 31 31 H 1.08002 * 119.99259 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.88788 * 180.02562 * 9 8 7 33 33 H 0.96997 * 120.00182 * 0.02562 * 13 12 10 34 34 H 0.97001 * 119.99644 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.10566 * 180.27572 * 14 12 10 36 36 H 1.08995 * 109.47190 * 266.44608 * 18 17 15 37 37 H 1.09003 * 109.47306 * 26.44211 * 18 17 15 38 38 H 1.09001 * 109.47589 * 146.44208 * 18 17 15 39 39 H 1.08990 * 109.47257 * 30.27698 * 19 17 15 40 40 H 1.09005 * 109.47230 * 150.27868 * 19 17 15 41 41 H 0.96992 * 120.00645 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0667 -2.2851 6 8 1.9969 1.2609 -2.2545 7 6 2.7099 -0.5614 -3.5278 8 6 2.9653 -1.9343 -3.5653 9 6 3.4243 -2.5190 -4.7271 10 6 3.6341 -1.7500 -5.8581 11 17 4.2114 -2.4948 -7.3162 12 6 3.3838 -0.3816 -5.8306 13 7 3.5977 0.3913 -6.9755 14 6 2.9175 0.2140 -4.6695 15 6 2.0324 -0.7102 1.2304 16 8 2.5214 -1.8160 1.1352 17 7 1.9383 -0.1168 2.4369 18 6 1.2564 1.1733 2.5673 19 6 2.5127 -0.7646 3.6186 20 6 1.4795 -1.6600 4.2526 21 1 0.4938 -1.7390 3.8184 22 6 1.7931 -2.3792 5.3864 23 7 2.9935 -2.2835 5.9149 24 14 0.5127 -3.4897 6.1718 25 1 0.0899 -4.5256 5.1954 26 1 1.0949 -4.1463 7.3699 27 1 -0.6648 -2.6796 6.5751 28 1 -0.3633 0.6630 -0.7852 29 1 -0.3633 -1.0115 -0.1815 30 1 -0.3633 0.3485 0.9668 31 1 2.8032 -2.5379 -2.6845 32 1 3.6207 -3.5807 -4.7541 33 1 3.9203 -0.0264 -7.7894 34 1 3.4235 1.3453 -6.9561 35 1 2.7184 1.2752 -4.6473 36 1 1.9862 1.9793 2.4923 37 1 0.5184 1.2762 1.7718 38 1 0.7571 1.2241 3.5349 39 1 3.3768 -1.3594 3.3230 40 1 2.8230 -0.0040 4.3351 41 1 3.2142 -2.7897 6.7123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052413980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -111.755873 kcal Electronic energy + Delta-G solvation = -26524.257022 eV Core-core repulsion = 22429.658546 eV Total energy + Delta-G solvation = -4094.598476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.02697 -40.81373 -40.06556 -37.73667 -37.41991 -36.68199 -35.71155 -34.87173 -33.16816 -32.05662 -29.87277 -29.57531 -27.68152 -26.31527 -25.56535 -24.00182 -23.55361 -21.97598 -20.47468 -19.49214 -18.68477 -18.52254 -17.97106 -17.79857 -17.40243 -17.25461 -17.03302 -16.52919 -16.16940 -15.99638 -15.30493 -15.07062 -14.89632 -14.78404 -14.73852 -14.30206 -14.10642 -13.67152 -13.62055 -13.45210 -13.33050 -13.06680 -12.91790 -12.78349 -12.67213 -12.59638 -12.35913 -12.16925 -11.95832 -11.93977 -11.85040 -11.79611 -11.70712 -10.63326 -10.60826 -10.04001 -9.51341 -8.68722 -8.21703 -6.36093 -0.58367 0.33295 1.01811 1.16462 1.32521 1.38518 1.42997 1.49802 1.61906 2.30031 2.43404 2.59366 2.77695 3.08391 3.37610 3.44984 3.63306 3.76168 3.84144 4.07930 4.12656 4.21951 4.31455 4.50872 4.60852 4.67038 4.70137 4.75421 4.88111 4.94999 5.08107 5.13088 5.18785 5.20454 5.24102 5.47747 5.52662 5.78677 6.04585 6.28852 6.46732 6.62160 6.72303 6.80634 7.21155 7.37206 8.85644 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.002238 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.510683 B =12506.930251 C =13370.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.122 0.878 4 O -0.335 6.335 5 C 0.509 3.491 6 O -0.517 6.517 7 C -0.084 4.084 8 C -0.115 4.115 9 C -0.070 4.070 10 C -0.091 4.091 11 Cl -0.053 7.053 12 C 0.221 3.779 13 N -0.857 5.857 14 C -0.124 4.124 15 C 0.499 3.501 16 O -0.574 6.574 17 N -0.600 5.600 18 C 0.059 3.941 19 C 0.260 3.740 20 C -0.542 4.542 21 H 0.056 0.944 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.278 1.278 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.409 0.591 34 H 0.415 0.585 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.077 0.923 39 H -0.002 1.002 40 H 0.031 0.969 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 7.891 -27.011 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.140 0.860 4 O -0.250 6.250 5 C 0.355 3.645 6 O -0.408 6.408 7 C -0.086 4.086 8 C -0.136 4.136 9 C -0.089 4.089 10 C -0.123 4.123 11 Cl -0.024 7.024 12 C 0.113 3.887 13 N -0.398 5.398 14 C -0.147 4.147 15 C 0.286 3.714 16 O -0.453 6.453 17 N -0.333 5.333 18 C -0.082 4.082 19 C 0.139 3.861 20 C -0.580 4.580 21 H 0.074 0.926 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.203 1.203 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.240 0.760 34 H 0.246 0.754 35 H 0.172 0.828 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.016 0.984 40 H 0.049 0.951 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.043 7.569 -26.975 28.091 hybrid contribution -0.078 -0.538 0.567 0.786 sum -2.121 7.031 -26.408 27.410 Atomic orbital electron populations 1.22342 0.89678 1.04556 1.05689 1.22582 0.97640 0.96948 0.80554 0.86025 1.86682 1.76853 1.41656 1.19841 1.21536 0.73905 0.84920 0.84116 1.90783 1.49235 1.16159 1.84598 1.18878 1.04530 0.94695 0.90543 1.21298 0.99828 0.93336 0.99129 1.21010 0.96707 1.01314 0.89883 1.20770 1.09330 0.91838 0.90339 1.98360 1.87272 1.81756 1.35060 1.17199 0.94000 0.88998 0.88462 1.42513 1.75181 1.11308 1.10827 1.20613 1.03338 1.01008 0.89753 1.20629 0.79642 0.86044 0.85081 1.90670 1.46735 1.21348 1.86587 1.48062 1.55699 1.22422 1.07096 1.22326 0.98005 0.83114 1.04788 1.18841 0.93228 0.92344 0.81651 1.21648 0.98957 1.26835 1.10599 0.92559 1.25860 0.97724 0.98116 0.97475 1.70035 1.21373 1.42921 1.22500 0.85467 0.79082 0.78742 0.77521 1.20335 1.20465 1.18328 0.88542 0.91285 0.87866 0.84310 0.82297 0.75976 0.75401 0.82824 0.90917 0.88115 0.90424 0.98355 0.95088 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 9.09 71.98 0.65 -3.52 16 2 C 0.08 2.60 2.17 29.85 0.06 2.67 16 3 H 0.12 3.48 6.75 -2.38 -0.02 3.46 16 4 O -0.33 -11.16 8.69 -49.93 -0.43 -11.59 16 5 C 0.51 14.67 7.87 70.32 0.55 15.22 16 6 O -0.52 -15.41 15.60 19.89 0.31 -15.10 16 7 C -0.08 -2.01 5.87 -20.11 -0.12 -2.13 16 8 C -0.12 -2.59 9.61 22.55 0.22 -2.37 16 9 C -0.07 -1.27 9.80 22.23 0.22 -1.05 16 10 C -0.09 -1.51 6.34 22.52 0.14 -1.37 16 11 Cl -0.05 -0.73 27.57 -2.72 -0.07 -0.81 16 12 C 0.22 3.48 6.75 38.17 0.26 3.74 16 13 N -0.86 -8.11 9.04 -51.37 -0.46 -8.58 16 14 C -0.12 -2.34 9.44 22.67 0.21 -2.12 16 15 C 0.50 21.64 7.00 87.65 0.61 22.25 16 16 O -0.57 -30.95 16.18 15.40 0.25 -30.70 16 17 N -0.60 -25.63 2.86 -851.15 -2.43 -28.06 16 18 C 0.06 1.74 9.85 127.77 1.26 3.00 16 19 C 0.26 14.03 5.14 85.64 0.44 14.47 16 20 C -0.54 -31.03 9.38 25.60 0.24 -30.79 16 21 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 22 C 0.01 0.42 5.46 84.65 0.46 0.88 16 23 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 24 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.35 5.49 -2.39 -0.01 2.33 16 31 H 0.14 3.42 7.60 -2.91 -0.02 3.40 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.41 3.10 7.49 -92.71 -0.69 2.41 16 34 H 0.41 2.27 8.84 -92.71 -0.82 1.45 16 35 H 0.15 2.57 7.65 -2.91 -0.02 2.55 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.28 4.14 -2.39 -0.01 2.27 16 38 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 39 H 0.00 -0.10 7.49 -2.39 -0.02 -0.12 16 40 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -76.64 368.10 4.28 -72.37 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.41 Total: 12.69 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.22 Total: 18.87 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.61 Total: -92.43 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: 0.13 Total: -57.40 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.07 Total: -0.81 kcal Total: -76.64 4.28 -72.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.390 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds