Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34718 * 116.99666 * 270.00342 * 4 2 1 6 6 O 1.21478 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.47684 * 119.99896 * 179.97438 * 5 4 2 8 8 C 1.39686 * 120.10145 * 359.97438 * 7 5 4 9 9 C 1.37935 * 120.00495 * 179.97438 * 8 7 5 10 10 C 1.38369 * 120.21904 * 0.02562 * 9 8 7 11 11 Cl 1.73603 * 119.89604 * 179.97438 * 10 9 8 12 12 C 1.39131 * 120.21242 * 359.97341 * 10 9 8 13 13 N 1.39790 * 120.00536 * 179.97438 * 12 10 9 14 14 C 1.38576 * 119.98731 * 359.77181 * 12 10 9 15 15 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 16 16 O 1.21280 * 120.00203 * 256.03360 * 15 2 1 17 17 N 1.34779 * 120.00030 * 76.02141 * 15 2 1 18 18 C 1.46499 * 119.99988 * 5.37097 * 17 15 2 19 19 C 1.46498 * 120.00081 * 185.37169 * 17 15 2 20 20 C 1.50702 * 109.47304 * 90.00354 * 19 17 15 21 21 H 1.08001 * 119.99689 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31510 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00092 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47139 * 89.99945 * 24 22 20 26 26 H 1.48498 * 109.47306 * 210.00314 * 24 22 20 27 27 H 1.48501 * 109.47274 * 330.00264 * 24 22 20 28 28 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 29 29 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 30 30 H 1.09005 * 109.47082 * 186.14061 * 1 2 3 31 31 H 1.08001 * 120.00000 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.88795 * 180.02562 * 9 8 7 33 33 H 0.96994 * 119.99807 * 0.02562 * 13 12 10 34 34 H 0.96998 * 119.99995 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.10640 * 180.25352 * 14 12 10 36 36 H 1.09006 * 109.47084 * 84.81792 * 18 17 15 37 37 H 1.08994 * 109.47590 * 204.81862 * 18 17 15 38 38 H 1.09006 * 109.47202 * 324.82157 * 18 17 15 39 39 H 1.09001 * 109.47134 * 210.00388 * 19 17 15 40 40 H 1.09001 * 109.47100 * 330.00088 * 19 17 15 41 41 H 0.97006 * 119.99650 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2178 0.0667 2.2851 6 8 1.9977 1.2610 2.2542 7 6 2.7090 -0.5616 3.5281 8 6 2.9624 -1.9348 3.5662 9 6 3.4216 -2.5195 4.7280 10 6 3.6323 -1.7502 5.8587 11 17 4.2097 -2.4949 7.3167 12 6 3.3829 -0.3817 5.8309 13 7 3.5968 0.3912 6.9758 14 6 2.9264 0.2156 4.6667 15 6 2.0324 -0.7104 -1.2304 16 8 2.4736 -1.8367 -1.1428 17 7 1.9913 -0.0941 -2.4284 18 6 1.5690 1.3058 -2.5178 19 6 2.3688 -0.8242 -3.6410 20 6 1.1505 -1.4918 -4.2253 21 1 0.1911 -1.3834 -3.7414 22 6 1.2610 -2.2417 -5.3770 23 7 0.1980 -2.8247 -5.8865 24 14 2.9207 -2.4298 -6.2135 25 1 3.6183 -3.6213 -5.6669 26 1 2.7218 -2.5998 -7.6752 27 1 3.7413 -1.2177 -5.9632 28 1 -0.3633 0.4158 -0.9398 29 1 -0.3633 0.6060 0.8299 30 1 -0.3633 -1.0218 0.1099 31 1 2.7988 -2.5387 2.6859 32 1 3.6172 -3.5813 4.7552 33 1 3.9194 -0.0264 7.7896 34 1 3.4225 1.3452 6.9564 35 1 2.7361 1.2784 4.6418 36 1 2.4229 1.9558 -2.3267 37 1 1.1775 1.5043 -3.5155 38 1 0.7924 1.4992 -1.7776 39 1 2.7861 -0.1284 -4.3690 40 1 3.1136 -1.5804 -3.3928 41 1 0.2757 -3.3520 -6.6970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052413983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -90.677647 kcal Electronic energy + Delta-G solvation = -26557.522002 eV Core-core repulsion = 22463.837547 eV Total energy + Delta-G solvation = -4093.684455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89643 -39.71045 -38.87161 -36.86515 -36.41435 -35.05125 -35.01815 -32.79090 -31.89088 -31.16972 -29.14166 -28.40299 -26.21182 -25.27252 -24.00217 -22.82148 -22.21187 -20.84951 -18.91717 -18.49797 -17.58502 -17.15988 -16.99124 -16.69548 -16.37642 -16.08189 -15.71563 -15.14558 -14.76073 -14.58106 -14.23784 -14.21970 -14.14366 -13.61660 -13.22165 -12.98132 -12.66528 -12.42303 -12.31377 -12.26934 -12.07589 -12.02989 -11.91994 -11.51648 -11.48294 -11.26366 -11.14253 -10.97611 -10.77308 -10.70080 -10.52903 -10.18268 -9.58137 -9.28777 -9.04938 -8.62022 -8.05290 -7.80771 -6.12017 -4.11603 0.25947 1.06908 1.71042 2.27603 2.33076 3.13094 3.27885 3.32270 3.34270 3.36241 3.40412 3.76184 4.33008 4.37088 4.48200 4.73927 4.82039 4.89075 4.97427 5.05095 5.06957 5.21513 5.38969 5.43021 5.48637 5.67874 5.71522 5.77253 5.87120 5.99904 6.04450 6.21476 6.22701 6.31697 6.63097 6.85453 6.88913 7.21749 7.22176 7.55416 7.60736 8.08623 8.41674 8.78804 8.90955 9.47671 11.01059 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.002263 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.180002 B =12371.552822 C =13160.695931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.105 0.895 4 O -0.318 6.318 5 C 0.508 3.492 6 O -0.505 6.505 7 C -0.068 4.068 8 C -0.103 4.103 9 C -0.074 4.074 10 C -0.086 4.086 11 Cl -0.067 7.067 12 C 0.215 3.785 13 N -0.871 5.871 14 C -0.124 4.124 15 C 0.513 3.487 16 O -0.519 6.519 17 N -0.592 5.592 18 C 0.073 3.927 19 C 0.216 3.784 20 C -0.532 4.532 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.266 1.266 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.402 0.598 34 H 0.404 0.596 35 H 0.146 0.854 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 8.133 25.349 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.122 0.878 4 O -0.233 6.233 5 C 0.353 3.647 6 O -0.395 6.395 7 C -0.070 4.070 8 C -0.123 4.123 9 C -0.093 4.093 10 C -0.118 4.118 11 Cl -0.038 7.038 12 C 0.109 3.891 13 N -0.411 5.411 14 C -0.147 4.147 15 C 0.298 3.702 16 O -0.394 6.394 17 N -0.325 5.325 18 C -0.071 4.071 19 C 0.096 3.904 20 C -0.571 4.571 21 H 0.094 0.906 22 C -0.129 4.129 23 N -0.534 5.534 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.233 0.767 34 H 0.233 0.767 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.978 7.677 25.276 27.084 hybrid contribution 0.729 0.164 -0.188 0.771 sum 6.707 7.841 25.088 27.127 Atomic orbital electron populations 1.22178 0.91726 1.04444 1.03955 1.22672 0.96295 0.97287 0.82284 0.87775 1.86672 1.76400 1.40863 1.19389 1.21141 0.74427 0.85033 0.84123 1.90809 1.48395 1.15851 1.84424 1.18889 1.02928 0.94161 0.90997 1.21379 0.98625 0.93572 0.98770 1.20876 0.97518 1.00447 0.90421 1.20663 1.09636 0.91551 0.89914 1.98354 1.87488 1.81933 1.36068 1.17190 0.94942 0.88865 0.88082 1.42511 1.76282 1.10791 1.11552 1.20563 1.03415 1.00710 0.90020 1.19751 0.79964 0.86748 0.83759 1.90692 1.45085 1.18286 1.85361 1.47736 1.65647 1.12038 1.07096 1.21869 0.99149 0.82115 1.03946 1.19744 0.97306 0.92403 0.80969 1.21311 0.95033 1.31156 1.09569 0.90634 1.24848 0.96582 0.94758 0.96752 1.69892 1.28832 1.32957 1.21686 0.86850 0.84586 0.79428 0.78838 1.19821 1.21035 1.19037 0.89287 0.91136 0.90396 0.83027 0.83884 0.76742 0.76710 0.83676 0.93273 0.89860 0.91884 0.94846 0.94258 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.19 37.15 0.34 -2.01 16 2 C 0.07 1.19 2.14 -27.89 -0.06 1.13 16 3 H 0.10 1.52 6.31 -51.93 -0.33 1.20 16 4 O -0.32 -5.16 8.71 -47.07 -0.41 -5.57 16 5 C 0.51 7.25 7.87 34.59 0.27 7.52 16 6 O -0.51 -7.69 15.60 -19.25 -0.30 -7.99 16 7 C -0.07 -0.80 5.87 -105.00 -0.62 -1.42 16 8 C -0.10 -1.12 9.61 -39.15 -0.38 -1.49 16 9 C -0.07 -0.68 9.80 -39.64 -0.39 -1.06 16 10 C -0.09 -0.77 6.34 -39.20 -0.25 -1.02 16 11 Cl -0.07 -0.52 27.57 -51.86 -1.43 -1.95 16 12 C 0.22 1.85 6.75 -83.77 -0.57 1.29 16 13 N -0.87 -5.04 9.05 32.41 0.29 -4.75 16 14 C -0.12 -1.22 9.44 -38.96 -0.37 -1.59 16 15 C 0.51 10.61 6.95 -10.99 -0.08 10.53 16 16 O -0.52 -12.85 16.13 -13.54 -0.22 -13.07 16 17 N -0.59 -12.05 2.86 -182.95 -0.52 -12.57 16 18 C 0.07 1.09 9.79 59.85 0.59 1.68 16 19 C 0.22 5.20 4.25 -5.19 -0.02 5.18 16 20 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 21 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 23 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 24 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 28 H 0.09 1.22 6.33 -51.93 -0.33 0.89 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.15 1.70 7.60 -52.49 -0.40 1.31 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.40 1.99 7.49 -40.82 -0.31 1.68 16 34 H 0.40 1.57 8.84 -40.82 -0.36 1.21 16 35 H 0.15 1.30 7.65 -52.49 -0.40 0.90 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 38 H 0.06 0.80 4.92 -51.93 -0.26 0.55 16 39 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 40 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -34.66 365.44 -7.74 -42.40 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.80 Total: 2.36 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.96 Total: 5.43 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.54 Total: -43.74 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.93 Total: -26.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.43 Total: -1.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.66 -7.74 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.277 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds