Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34718 * 116.99666 * 270.00342 * 4 2 1 6 6 O 1.21478 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.47684 * 119.99896 * 179.97438 * 5 4 2 8 8 C 1.39686 * 120.10145 * 359.97438 * 7 5 4 9 9 C 1.37935 * 120.00495 * 179.97438 * 8 7 5 10 10 C 1.38369 * 120.21904 * 0.02562 * 9 8 7 11 11 Cl 1.73603 * 119.89604 * 179.97438 * 10 9 8 12 12 C 1.39131 * 120.21242 * 359.97341 * 10 9 8 13 13 N 1.39790 * 120.00536 * 179.97438 * 12 10 9 14 14 C 1.38576 * 119.98731 * 359.77181 * 12 10 9 15 15 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 16 16 O 1.21280 * 120.00203 * 256.03360 * 15 2 1 17 17 N 1.34779 * 120.00030 * 76.02141 * 15 2 1 18 18 C 1.46499 * 119.99988 * 5.37097 * 17 15 2 19 19 C 1.46498 * 120.00081 * 185.37169 * 17 15 2 20 20 C 1.50702 * 109.47304 * 90.00354 * 19 17 15 21 21 H 1.08001 * 119.99689 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31510 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00092 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47139 * 89.99945 * 24 22 20 26 26 H 1.48498 * 109.47306 * 210.00314 * 24 22 20 27 27 H 1.48501 * 109.47274 * 330.00264 * 24 22 20 28 28 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 29 29 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 30 30 H 1.09005 * 109.47082 * 186.14061 * 1 2 3 31 31 H 1.08001 * 120.00000 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.88795 * 180.02562 * 9 8 7 33 33 H 0.96994 * 119.99807 * 0.02562 * 13 12 10 34 34 H 0.96998 * 119.99995 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.10640 * 180.25352 * 14 12 10 36 36 H 1.09006 * 109.47084 * 84.81792 * 18 17 15 37 37 H 1.08994 * 109.47590 * 204.81862 * 18 17 15 38 38 H 1.09006 * 109.47202 * 324.82157 * 18 17 15 39 39 H 1.09001 * 109.47134 * 210.00388 * 19 17 15 40 40 H 1.09001 * 109.47100 * 330.00088 * 19 17 15 41 41 H 0.97006 * 119.99650 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2178 0.0667 2.2851 6 8 1.9977 1.2610 2.2542 7 6 2.7090 -0.5616 3.5281 8 6 2.9624 -1.9348 3.5662 9 6 3.4216 -2.5195 4.7280 10 6 3.6323 -1.7502 5.8587 11 17 4.2097 -2.4949 7.3167 12 6 3.3829 -0.3817 5.8309 13 7 3.5968 0.3912 6.9758 14 6 2.9264 0.2156 4.6667 15 6 2.0324 -0.7104 -1.2304 16 8 2.4736 -1.8367 -1.1428 17 7 1.9913 -0.0941 -2.4284 18 6 1.5690 1.3058 -2.5178 19 6 2.3688 -0.8242 -3.6410 20 6 1.1505 -1.4918 -4.2253 21 1 0.1911 -1.3834 -3.7414 22 6 1.2610 -2.2417 -5.3770 23 7 0.1980 -2.8247 -5.8865 24 14 2.9207 -2.4298 -6.2135 25 1 3.6183 -3.6213 -5.6669 26 1 2.7218 -2.5998 -7.6752 27 1 3.7413 -1.2177 -5.9632 28 1 -0.3633 0.4158 -0.9398 29 1 -0.3633 0.6060 0.8299 30 1 -0.3633 -1.0218 0.1099 31 1 2.7988 -2.5387 2.6859 32 1 3.6172 -3.5813 4.7552 33 1 3.9194 -0.0264 7.7896 34 1 3.4225 1.3452 6.9564 35 1 2.7361 1.2784 4.6418 36 1 2.4229 1.9558 -2.3267 37 1 1.1775 1.5043 -3.5155 38 1 0.7924 1.4992 -1.7776 39 1 2.7861 -0.1284 -4.3690 40 1 3.1136 -1.5804 -3.3928 41 1 0.2757 -3.3520 -6.6970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052413983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -113.126640 kcal Electronic energy + Delta-G solvation = -26558.495464 eV Core-core repulsion = 22463.837547 eV Total energy + Delta-G solvation = -4094.657917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03732 -40.84053 -40.08359 -37.75254 -37.42342 -36.72104 -35.71037 -34.79973 -33.24575 -32.06913 -30.28743 -29.80168 -27.62069 -26.38029 -25.42708 -23.79234 -23.55239 -21.95944 -20.40614 -19.50445 -19.13191 -18.53874 -18.00415 -17.83831 -17.43216 -17.26566 -17.02800 -16.47253 -16.31365 -15.87906 -15.31128 -15.08437 -14.89558 -14.84366 -14.69027 -14.35524 -14.25720 -13.74081 -13.64948 -13.47782 -13.41762 -13.22363 -12.93489 -12.78735 -12.67836 -12.61837 -12.44771 -12.03272 -11.98084 -11.93880 -11.85011 -11.79629 -11.73195 -10.82308 -10.69119 -10.03999 -9.49857 -8.68731 -8.32958 -6.38388 -0.58407 0.33336 1.01857 1.14885 1.31702 1.35164 1.38884 1.46761 1.53998 2.29435 2.32320 2.59378 2.77533 3.01341 3.35719 3.42809 3.63353 3.74793 3.80663 4.07935 4.12676 4.26704 4.31060 4.48085 4.55815 4.61989 4.69975 4.73961 4.78470 4.86834 4.92340 5.06722 5.08492 5.19616 5.21981 5.43968 5.47802 5.52465 6.22177 6.28880 6.43950 6.55837 6.63215 6.80541 7.13920 7.28639 8.83461 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.002263 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.180002 B =12371.552822 C =13160.695931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.082 3.918 3 H 0.127 0.873 4 O -0.335 6.335 5 C 0.510 3.490 6 O -0.517 6.517 7 C -0.084 4.084 8 C -0.115 4.115 9 C -0.070 4.070 10 C -0.091 4.091 11 Cl -0.054 7.054 12 C 0.221 3.779 13 N -0.857 5.857 14 C -0.124 4.124 15 C 0.504 3.496 16 O -0.572 6.572 17 N -0.597 5.597 18 C 0.064 3.936 19 C 0.222 3.778 20 C -0.537 4.537 21 H 0.034 0.966 22 C 0.013 3.987 23 N -0.943 5.943 24 Si 0.945 3.055 25 H -0.277 1.277 26 H -0.276 1.276 27 H -0.237 1.237 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.409 0.591 34 H 0.415 0.585 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 9.961 26.977 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.144 0.856 4 O -0.250 6.250 5 C 0.355 3.645 6 O -0.407 6.407 7 C -0.086 4.086 8 C -0.136 4.136 9 C -0.089 4.089 10 C -0.123 4.123 11 Cl -0.025 7.025 12 C 0.113 3.887 13 N -0.398 5.398 14 C -0.147 4.147 15 C 0.291 3.709 16 O -0.451 6.451 17 N -0.329 5.329 18 C -0.077 4.077 19 C 0.101 3.899 20 C -0.576 4.576 21 H 0.053 0.947 22 C -0.185 4.185 23 N -0.582 5.582 24 Si 0.768 3.232 25 H -0.203 1.203 26 H -0.201 1.201 27 H -0.160 1.160 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.240 0.760 34 H 0.246 0.754 35 H 0.172 0.828 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.463 9.587 26.946 29.558 hybrid contribution 0.215 -0.402 -0.534 0.702 sum 7.679 9.185 26.411 28.998 Atomic orbital electron populations 1.22171 0.90235 1.04070 1.05270 1.22565 0.97160 0.97281 0.80643 0.85554 1.86686 1.76794 1.41693 1.19864 1.21538 0.73905 0.84921 0.84094 1.90784 1.49179 1.16152 1.84568 1.18872 1.04506 0.94670 0.90568 1.21300 0.99788 0.93342 0.99147 1.21012 0.96714 1.01299 0.89893 1.20773 1.09342 0.91839 0.90331 1.98361 1.87250 1.81767 1.35100 1.17202 0.94048 0.88986 0.88432 1.42516 1.75174 1.11315 1.10838 1.20615 1.03369 1.00982 0.89739 1.20566 0.78915 0.86349 0.85087 1.90654 1.47428 1.20695 1.86362 1.47819 1.65263 1.13866 1.06001 1.22207 1.01303 0.79388 1.04823 1.19453 0.94989 0.92720 0.82787 1.21527 0.94958 1.31577 1.09495 0.94730 1.25808 1.00810 0.94301 0.97621 1.70039 1.31489 1.34177 1.22542 0.85757 0.79535 0.80198 0.77733 1.20285 1.20073 1.16023 0.88770 0.88601 0.91978 0.84268 0.82302 0.75986 0.75403 0.82810 0.89989 0.90008 0.89500 0.92491 0.96075 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.19 71.98 0.66 -3.77 16 2 C 0.08 2.60 2.14 29.85 0.06 2.67 16 3 H 0.13 3.45 6.31 -2.39 -0.02 3.43 16 4 O -0.33 -10.93 8.71 -50.04 -0.44 -11.37 16 5 C 0.51 14.30 7.87 70.32 0.55 14.85 16 6 O -0.52 -15.00 15.60 19.91 0.31 -14.69 16 7 C -0.08 -1.95 5.87 -20.11 -0.12 -2.07 16 8 C -0.12 -2.51 9.61 22.55 0.22 -2.29 16 9 C -0.07 -1.23 9.80 22.23 0.22 -1.01 16 10 C -0.09 -1.47 6.34 22.52 0.14 -1.33 16 11 Cl -0.05 -0.72 27.57 -2.72 -0.07 -0.79 16 12 C 0.22 3.37 6.75 38.17 0.26 3.63 16 13 N -0.86 -7.76 9.05 -51.37 -0.46 -8.22 16 14 C -0.12 -2.26 9.44 22.67 0.21 -2.05 16 15 C 0.50 21.06 6.95 87.66 0.61 21.67 16 16 O -0.57 -29.39 16.13 15.23 0.25 -29.15 16 17 N -0.60 -24.06 2.86 -851.13 -2.43 -26.50 16 18 C 0.06 1.80 9.79 127.77 1.25 3.05 16 19 C 0.22 10.67 4.25 85.63 0.36 11.03 16 20 C -0.54 -30.95 9.94 25.60 0.25 -30.69 16 21 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 22 C 0.01 0.75 5.47 84.65 0.46 1.22 16 23 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 24 Si 0.94 43.85 27.47 68.60 1.88 45.74 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 28 H 0.09 2.48 6.33 -2.39 -0.02 2.47 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.14 3.32 7.60 -2.91 -0.02 3.30 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.41 2.95 7.49 -92.71 -0.69 2.26 16 34 H 0.41 2.10 8.84 -92.71 -0.82 1.28 16 35 H 0.15 2.48 7.65 -2.91 -0.02 2.46 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.08 2.32 8.03 -2.39 -0.02 2.30 16 38 H 0.09 2.00 4.92 -2.38 -0.01 1.99 16 39 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 40 H 0.02 1.10 6.78 -2.39 -0.02 1.08 16 41 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -77.69 365.44 4.02 -73.67 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.46 Total: 14.92 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.15 Total: 14.91 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -2.60 Total: -93.23 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: 0.12 Total: -55.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -77.69 4.02 -73.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.453 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds