Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47309 * 2 1 4 4 C 1.46502 * 119.99717 * 270.00011 * 3 2 1 5 5 C 1.50699 * 109.47166 * 269.99435 * 4 3 2 6 6 H 1.08011 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00339 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47306 * 60.00138 * 9 7 5 11 11 H 1.48506 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47359 * 299.99854 * 9 7 5 13 13 C 1.34777 * 120.00157 * 89.99641 * 3 2 1 14 14 O 1.21280 * 120.00044 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00118 * 0.02562 * 13 3 2 16 16 O 1.42893 * 109.47160 * 179.97438 * 15 13 3 17 17 C 1.35677 * 117.00140 * 179.97438 * 16 15 13 18 18 C 1.38708 * 120.13330 * 0.02562 * 17 16 15 19 19 C 1.38050 * 120.09404 * 179.97438 * 18 17 16 20 20 C 1.38639 * 120.38315 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.86559 * 180.02562 * 20 19 18 22 22 C 1.37897 * 120.27367 * 359.76666 * 20 19 18 23 23 C 1.39714 * 119.88709 * 0.50667 * 22 20 19 24 24 C 1.47541 * 120.18156 * 179.74405 * 23 22 20 25 25 N 1.34777 * 119.99728 * 359.72547 * 24 23 22 26 26 O 1.21583 * 120.00002 * 179.72855 * 24 23 22 27 27 H 1.09005 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47277 * 300.00142 * 1 2 3 29 29 H 1.09000 * 109.47065 * 60.00562 * 1 2 3 30 30 H 1.09002 * 109.46992 * 239.99552 * 2 1 3 31 31 H 1.09000 * 109.46901 * 119.99967 * 2 1 3 32 32 H 1.08996 * 109.47588 * 29.99793 * 4 3 2 33 33 H 1.08997 * 109.47049 * 150.00204 * 4 3 2 34 34 H 0.97004 * 119.99665 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47227 * 59.99418 * 15 13 3 36 36 H 1.09005 * 109.46640 * 299.99818 * 15 13 3 37 37 H 1.07994 * 119.94837 * 0.02562 * 18 17 16 38 38 H 1.08005 * 119.80403 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.05569 * 180.25718 * 22 20 19 40 40 H 0.97001 * 120.00485 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99790 * 179.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1254 -3.6181 9 14 5.9132 2.0954 -3.4174 10 1 6.1403 0.6386 -3.5946 11 1 6.1608 2.7954 -4.7035 12 1 6.8410 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3022 2.1814 3.5584 17 6 2.1293 1.6926 4.8122 18 6 1.6711 0.3965 4.9972 19 6 1.4959 -0.1002 6.2733 20 6 1.7762 0.6895 7.3777 21 17 1.5517 0.0510 8.9764 22 6 2.2375 1.9784 7.2117 23 6 2.4134 2.4946 5.9254 24 6 2.9013 3.8746 5.7403 25 7 3.1734 4.6428 6.8137 26 8 3.0579 4.3188 4.6194 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.6753 3.5159 -4.4441 35 1 2.6226 0.4188 2.5299 36 1 0.9443 1.0115 2.5302 37 1 1.4519 -0.2251 4.1417 38 1 1.1393 -1.1103 6.4119 39 1 2.4587 2.5891 8.0746 40 1 3.0488 4.2883 7.7080 41 1 3.4980 5.5488 6.6920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053608063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -83.239845 kcal Electronic energy + Delta-G solvation = -26927.310894 eV Core-core repulsion = 22833.948966 eV Total energy + Delta-G solvation = -4093.361928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88771 -39.34723 -38.52788 -37.73513 -36.44422 -35.29350 -33.83676 -32.82797 -31.54633 -30.41141 -30.13743 -28.73917 -26.49504 -24.57789 -23.20242 -23.03397 -22.08068 -20.98319 -18.94484 -18.59705 -17.60695 -17.15157 -16.61117 -16.34869 -16.18758 -16.02703 -15.53612 -15.19335 -14.94619 -14.77108 -14.30475 -14.02357 -13.73500 -13.57822 -13.48955 -13.29459 -12.91386 -12.56484 -12.41684 -12.04837 -11.94615 -11.75801 -11.55221 -11.36333 -11.20616 -10.97932 -10.91081 -10.70288 -10.53218 -10.12483 -9.96189 -9.72526 -9.65249 -9.57429 -8.92124 -8.45195 -8.41848 -7.71792 -6.03109 -4.07892 0.42865 0.82069 1.75248 2.65428 2.73880 3.29483 3.33699 3.34297 3.38295 3.42778 3.49921 3.96631 4.26912 4.30767 4.46581 4.58430 4.80001 4.87571 4.96416 4.99694 5.10001 5.24025 5.28277 5.31838 5.36733 5.54494 5.68095 5.69569 5.73994 5.92797 6.04722 6.16435 6.40927 6.71216 6.94493 7.12302 7.25431 7.43616 7.51505 7.92897 8.23186 8.26594 8.33057 8.89245 9.04413 9.57018 11.05078 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002689 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.525925 B =10409.402222 C =11370.048189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.595 5.595 4 C 0.249 3.751 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.503 6.503 15 C 0.030 3.970 16 O -0.245 6.245 17 C 0.199 3.801 18 C -0.210 4.210 19 C -0.039 4.039 20 C -0.089 4.089 21 Cl -0.069 7.069 22 C -0.037 4.037 23 C -0.164 4.164 24 C 0.555 3.445 25 N -0.858 5.858 26 O -0.491 6.491 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.395 0.605 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -8.963 24.716 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.329 5.329 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.289 3.711 14 O -0.376 6.376 15 C -0.048 4.048 16 O -0.154 6.154 17 C 0.149 3.851 18 C -0.229 4.229 19 C -0.058 4.058 20 C -0.116 4.116 21 Cl -0.041 7.041 22 C -0.057 4.057 23 C -0.169 4.169 24 C 0.339 3.661 25 N -0.425 5.425 26 O -0.364 6.364 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.224 0.776 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.449 -7.938 23.730 25.841 hybrid contribution 0.892 -0.450 0.246 1.028 sum -5.558 -8.388 23.977 26.002 Atomic orbital electron populations 1.22252 0.96644 1.01549 1.02519 1.21469 0.93622 0.84180 1.02821 1.48195 1.64340 1.13286 1.07118 1.19307 0.96390 0.93749 0.77522 1.21390 0.96894 1.32150 1.06293 0.92483 1.24925 0.97870 0.94860 0.96376 1.69919 1.35749 1.33292 1.14362 0.86553 0.84813 0.78191 0.77842 1.20262 1.21164 1.20119 1.19589 0.80136 0.87284 0.84070 1.90789 1.43297 1.17188 1.86364 1.22940 1.01790 0.93579 0.86514 1.86507 1.79303 1.39177 1.10406 1.19234 0.89606 0.90977 0.85327 1.21300 1.07676 0.95371 0.98580 1.21003 0.94916 0.99615 0.90267 1.20549 1.09388 0.95134 0.86553 1.98370 1.96003 1.86650 1.23038 1.20964 0.95174 0.93661 0.95857 1.19223 1.10985 0.95652 0.91028 1.17906 0.78117 0.85014 0.85014 1.43731 1.71822 1.18245 1.08666 1.91070 1.49500 1.72881 1.22916 0.91981 0.93180 0.91724 0.89474 0.92053 0.94693 0.93724 0.92632 0.89244 0.89320 0.83533 0.84074 0.84056 0.77607 0.76320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.55 5.93 -4.05 -0.02 1.52 16 3 N -0.59 -12.45 2.46 -175.07 -0.43 -12.88 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.51 10.94 7.75 -10.99 -0.09 10.85 16 14 O -0.50 -13.84 16.08 -14.35 -0.23 -14.07 16 15 C 0.03 0.47 3.77 36.01 0.14 0.60 16 16 O -0.25 -4.34 7.74 -49.00 -0.38 -4.72 16 17 C 0.20 2.68 6.70 -38.70 -0.26 2.42 16 18 C -0.21 -2.04 9.03 -39.48 -0.36 -2.39 16 19 C -0.04 -0.31 9.81 -39.50 -0.39 -0.70 16 20 C -0.09 -0.75 6.31 -39.56 -0.25 -1.00 16 21 Cl -0.07 -0.51 28.94 -51.86 -1.50 -2.01 16 22 C -0.04 -0.32 9.31 -39.16 -0.36 -0.69 16 23 C -0.16 -2.02 5.89 -104.85 -0.62 -2.63 16 24 C 0.56 7.83 8.04 -12.47 -0.10 7.73 16 25 N -0.86 -7.48 8.82 30.46 0.27 -7.21 16 26 O -0.49 -9.95 15.99 -16.60 -0.27 -10.21 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.09 1.11 6.92 -51.93 -0.36 0.75 16 36 H 0.09 1.05 6.71 -51.93 -0.35 0.70 16 37 H 0.15 1.10 6.30 -52.49 -0.33 0.77 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 0.77 6.40 -52.49 -0.34 0.44 16 40 H 0.40 1.99 6.86 -40.82 -0.28 1.71 16 41 H 0.41 3.17 8.93 -40.82 -0.36 2.80 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -39.00 366.76 -8.43 -47.44 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.76 Total: 0.35 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.37 Total: 6.75 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.58 Total: -46.17 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.88 Total: -29.00 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.00 -8.43 -47.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053608063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.804 kcal (2) G-P(sol) polarization free energy of solvation -39.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds