Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47309 * 2 1 4 4 C 1.46502 * 119.99717 * 270.00011 * 3 2 1 5 5 C 1.50699 * 109.47166 * 269.99435 * 4 3 2 6 6 H 1.08011 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00339 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47306 * 60.00138 * 9 7 5 11 11 H 1.48506 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47359 * 299.99854 * 9 7 5 13 13 C 1.34777 * 120.00157 * 89.99641 * 3 2 1 14 14 O 1.21280 * 120.00044 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00118 * 0.02562 * 13 3 2 16 16 O 1.42893 * 109.47160 * 179.97438 * 15 13 3 17 17 C 1.35677 * 117.00140 * 179.97438 * 16 15 13 18 18 C 1.38708 * 120.13330 * 0.02562 * 17 16 15 19 19 C 1.38050 * 120.09404 * 179.97438 * 18 17 16 20 20 C 1.38639 * 120.38315 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.86559 * 180.02562 * 20 19 18 22 22 C 1.37897 * 120.27367 * 359.76666 * 20 19 18 23 23 C 1.39714 * 119.88709 * 0.50667 * 22 20 19 24 24 C 1.47541 * 120.18156 * 179.74405 * 23 22 20 25 25 N 1.34777 * 119.99728 * 359.72547 * 24 23 22 26 26 O 1.21583 * 120.00002 * 179.72855 * 24 23 22 27 27 H 1.09005 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47277 * 300.00142 * 1 2 3 29 29 H 1.09000 * 109.47065 * 60.00562 * 1 2 3 30 30 H 1.09002 * 109.46992 * 239.99552 * 2 1 3 31 31 H 1.09000 * 109.46901 * 119.99967 * 2 1 3 32 32 H 1.08996 * 109.47588 * 29.99793 * 4 3 2 33 33 H 1.08997 * 109.47049 * 150.00204 * 4 3 2 34 34 H 0.97004 * 119.99665 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47227 * 59.99418 * 15 13 3 36 36 H 1.09005 * 109.46640 * 299.99818 * 15 13 3 37 37 H 1.07994 * 119.94837 * 0.02562 * 18 17 16 38 38 H 1.08005 * 119.80403 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.05569 * 180.25718 * 22 20 19 40 40 H 0.97001 * 120.00485 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99790 * 179.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1254 -3.6181 9 14 5.9132 2.0954 -3.4174 10 1 6.1403 0.6386 -3.5946 11 1 6.1608 2.7954 -4.7035 12 1 6.8410 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3022 2.1814 3.5584 17 6 2.1293 1.6926 4.8122 18 6 1.6711 0.3965 4.9972 19 6 1.4959 -0.1002 6.2733 20 6 1.7762 0.6895 7.3777 21 17 1.5517 0.0510 8.9764 22 6 2.2375 1.9784 7.2117 23 6 2.4134 2.4946 5.9254 24 6 2.9013 3.8746 5.7403 25 7 3.1734 4.6428 6.8137 26 8 3.0579 4.3188 4.6194 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.6753 3.5159 -4.4441 35 1 2.6226 0.4188 2.5299 36 1 0.9443 1.0115 2.5302 37 1 1.4519 -0.2251 4.1417 38 1 1.1393 -1.1103 6.4119 39 1 2.4587 2.5891 8.0746 40 1 3.0488 4.2883 7.7080 41 1 3.4980 5.5488 6.6920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053608063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -111.990911 kcal Electronic energy + Delta-G solvation = -26928.557634 eV Core-core repulsion = 22833.948966 eV Total energy + Delta-G solvation = -4094.608668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85069 -40.77373 -39.70549 -38.67096 -37.17885 -36.95206 -34.94597 -34.82624 -32.33509 -31.72224 -31.22841 -30.08765 -28.24660 -25.41400 -24.98094 -24.22726 -23.19710 -21.90405 -20.11967 -19.85823 -18.66807 -18.54253 -18.13007 -17.71369 -17.43031 -17.21688 -16.71556 -16.41422 -16.10870 -15.88762 -15.75811 -15.40991 -14.82633 -14.66243 -14.57631 -14.41863 -14.11317 -13.98310 -13.61385 -13.32757 -13.28317 -13.13762 -12.83156 -12.68415 -12.61745 -12.44007 -12.16901 -11.99747 -11.93688 -11.76309 -11.65818 -11.08479 -10.70609 -10.65666 -10.64343 -10.27366 -9.50880 -9.26963 -8.24022 -6.38782 -0.33423 0.07999 1.10119 1.34397 1.40196 1.46439 1.59844 1.70230 1.77290 2.35830 2.50207 2.62803 2.63723 3.05789 3.42298 3.61054 3.70075 3.78957 3.94843 4.01467 4.12232 4.18753 4.30889 4.42211 4.54609 4.63409 4.66012 4.91424 4.98511 5.02061 5.04614 5.04858 5.19638 5.36025 5.41123 5.54897 5.81165 5.88769 6.03958 6.16355 6.45328 6.66500 6.72336 7.25422 7.36226 7.41611 8.83307 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002689 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.525925 B =10409.402222 C =11370.048189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.597 5.597 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.255 1.255 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.492 3.508 14 O -0.581 6.581 15 C 0.045 3.955 16 O -0.293 6.293 17 C 0.166 3.834 18 C -0.203 4.203 19 C -0.028 4.028 20 C -0.089 4.089 21 Cl -0.054 7.054 22 C -0.026 4.026 23 C -0.187 4.187 24 C 0.549 3.451 25 N -0.832 5.832 26 O -0.569 6.569 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.416 0.584 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -12.781 27.646 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.179 1.179 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.279 3.721 14 O -0.460 6.460 15 C -0.032 4.032 16 O -0.203 6.203 17 C 0.117 3.883 18 C -0.221 4.221 19 C -0.046 4.046 20 C -0.116 4.116 21 Cl -0.026 7.026 22 C -0.045 4.045 23 C -0.191 4.191 24 C 0.335 3.665 25 N -0.399 5.399 26 O -0.448 6.448 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.191 0.809 38 H 0.192 0.808 39 H 0.188 0.812 40 H 0.248 0.752 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.818 -11.832 26.757 30.040 hybrid contribution 0.928 0.703 -0.464 1.254 sum -5.890 -11.128 26.292 29.152 Atomic orbital electron populations 1.22197 0.94301 1.03910 1.01782 1.21905 0.95540 0.80706 1.04663 1.48204 1.63949 1.15434 1.05397 1.18727 0.95552 0.91389 0.80119 1.21692 0.97891 1.32246 1.06524 0.92731 1.25882 1.02496 0.94422 0.96456 1.70047 1.37871 1.34094 1.14816 0.85467 0.78821 0.79274 0.77246 1.17917 1.20248 1.20753 1.20790 0.78343 0.86696 0.86254 1.90745 1.46790 1.20772 1.87732 1.22840 1.04834 0.92773 0.82797 1.86456 1.80773 1.40926 1.12192 1.19637 0.91844 0.92959 0.83873 1.21544 1.06532 0.93773 1.00293 1.21390 0.93153 1.00782 0.89296 1.20726 1.08344 0.94977 0.87504 1.98387 1.95846 1.86344 1.21983 1.21164 0.93976 0.94258 0.95111 1.19276 1.12577 0.94833 0.92439 1.18388 0.77232 0.86135 0.84732 1.43526 1.69696 1.17997 1.08656 1.91041 1.53274 1.74561 1.25889 0.87911 0.92075 0.94411 0.90359 0.87458 0.95207 0.99078 0.92372 0.85649 0.85249 0.80932 0.80822 0.81210 0.75184 0.75745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.09 2.63 5.93 86.38 0.51 3.14 16 3 N -0.60 -25.70 2.46 -826.18 -2.03 -27.73 16 4 C 0.26 14.69 5.16 85.63 0.44 15.13 16 5 C -0.55 -32.39 9.39 25.60 0.24 -32.15 16 6 H 0.05 3.18 7.81 -2.90 -0.02 3.16 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 9 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 10 H -0.25 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 13 C 0.49 22.14 7.75 87.66 0.68 22.81 16 14 O -0.58 -34.69 16.08 16.01 0.26 -34.43 16 15 C 0.05 1.33 3.77 71.24 0.27 1.60 16 16 O -0.29 -10.59 7.74 -61.01 -0.47 -11.07 16 17 C 0.17 4.30 6.70 22.84 0.15 4.46 16 18 C -0.20 -3.20 9.03 22.34 0.20 -3.00 16 19 C -0.03 -0.32 9.81 22.32 0.22 -0.10 16 20 C -0.09 -1.14 6.31 22.28 0.14 -1.00 16 21 Cl -0.05 -0.59 28.94 -2.72 -0.08 -0.67 16 22 C -0.03 -0.38 9.31 22.55 0.21 -0.17 16 23 C -0.19 -4.46 5.89 -20.01 -0.12 -4.58 16 24 C 0.55 16.08 8.04 86.70 0.70 16.78 16 25 N -0.83 -14.23 8.82 -175.81 -1.55 -15.78 16 26 O -0.57 -24.97 15.99 16.95 0.27 -24.70 16 27 H 0.10 1.49 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.11 2.05 6.44 -2.39 -0.02 2.03 16 32 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 33 H -0.01 -0.59 7.42 -2.39 -0.02 -0.60 16 34 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 35 H 0.13 2.71 6.92 -2.39 -0.02 2.69 16 36 H 0.13 2.66 6.71 -2.38 -0.02 2.64 16 37 H 0.17 1.68 6.30 -2.91 -0.02 1.67 16 38 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.17 1.28 6.40 -2.91 -0.02 1.26 16 40 H 0.42 3.42 6.86 -92.71 -0.64 2.78 16 41 H 0.41 6.47 8.93 -92.70 -0.83 5.65 16 Total: -1.00 -96.86 366.76 3.20 -93.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -0.36 Total: 9.17 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 4.84 Total: 20.85 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.30 Total: -101.09 kcal Atomic # 8 Polarization: -70.25 SS G_CDS: 0.06 Total: -70.19 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -96.86 3.20 -93.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053608063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.329 kcal (2) G-P(sol) polarization free energy of solvation -96.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds