Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47076 * 2 1 4 4 C 1.46504 * 120.00527 * 269.99842 * 3 2 1 5 5 C 1.50691 * 109.47272 * 270.00408 * 4 3 2 6 6 H 1.07999 * 120.00265 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99545 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00543 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46987 * 90.00227 * 9 7 5 11 11 H 1.48498 * 109.47417 * 209.99802 * 9 7 5 12 12 H 1.48500 * 109.47157 * 330.00550 * 9 7 5 13 13 C 1.34786 * 119.99715 * 90.00342 * 3 2 1 14 14 O 1.21277 * 119.99730 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99772 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.46888 * 179.97438 * 15 13 3 17 17 C 1.34772 * 116.99996 * 180.02562 * 16 15 13 18 18 O 1.21530 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.47295 * 120.00197 * 180.02562 * 17 16 15 20 20 C 1.39886 * 120.08185 * 0.02562 * 19 17 16 21 21 C 1.36549 * 120.05879 * 179.97438 * 20 19 17 22 22 C 1.39277 * 120.23999 * 359.97438 * 21 20 19 23 23 N 1.39015 * 119.91223 * 180.02562 * 22 21 20 24 24 C 1.39163 * 120.17108 * 359.76935 * 22 21 20 25 25 C 1.37813 * 119.93701 * 0.51109 * 24 22 21 26 26 Cl 1.73599 * 120.12228 * 179.74700 * 25 24 22 27 27 H 1.09004 * 109.47369 * 59.99771 * 1 2 3 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47248 * 299.99638 * 1 2 3 30 30 H 1.09007 * 109.47065 * 240.00569 * 2 1 3 31 31 H 1.08997 * 109.47487 * 120.00573 * 2 1 3 32 32 H 1.09002 * 109.46703 * 30.00326 * 4 3 2 33 33 H 1.08998 * 109.46796 * 149.99975 * 4 3 2 34 34 H 0.96997 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47174 * 60.00372 * 15 13 3 36 36 H 1.08994 * 109.47648 * 300.00282 * 15 13 3 37 37 H 1.07998 * 119.97382 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.87445 * 179.97438 * 21 20 19 39 39 H 0.97008 * 120.00081 * 359.97438 * 23 22 21 40 40 H 0.96997 * 120.00219 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.03013 * 180.25385 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1491 2.3897 -2.8778 8 7 3.3487 3.1251 -3.6184 9 14 5.9135 2.0968 -3.4168 10 1 5.9774 0.8756 -4.2592 11 1 6.3921 3.2640 -4.2002 12 1 6.7736 1.9179 -2.2195 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3065 2.1955 3.5760 17 6 2.1350 1.7097 4.8214 18 8 1.7334 0.5737 4.9806 19 6 2.4343 2.5555 5.9896 20 6 2.8961 3.8634 5.8084 21 6 3.1729 4.6472 6.8917 22 6 2.9968 4.1499 8.1807 23 7 3.2801 4.9540 9.2787 24 6 2.5327 2.8520 8.3723 25 6 2.2567 2.0527 7.2841 26 17 1.6839 0.4306 7.5175 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1382 34 1 3.6748 3.5157 -4.4443 35 1 2.6212 0.4185 2.5302 36 1 0.9433 1.0123 2.5299 37 1 3.0339 4.2536 4.8109 38 1 3.5297 5.6565 6.7484 39 1 3.6005 5.8601 9.1466 40 1 3.1583 4.6089 10.1770 41 1 2.3931 2.4701 9.3728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063998446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -90.656698 kcal Electronic energy + Delta-G solvation = -26484.687642 eV Core-core repulsion = 22391.004095 eV Total energy + Delta-G solvation = -4093.683547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60590 -39.53032 -38.73333 -36.80151 -36.09795 -35.24658 -34.89726 -32.82118 -31.23355 -30.18206 -29.94661 -28.73339 -26.48524 -23.88210 -23.22492 -23.03309 -22.46180 -20.99010 -18.70943 -18.23205 -17.68855 -17.31952 -16.66136 -16.55450 -16.28626 -16.00362 -15.35720 -14.91053 -14.72114 -14.57573 -14.31491 -14.06561 -13.91565 -13.49019 -13.31778 -13.05965 -12.76744 -12.37208 -12.25908 -12.03761 -12.01866 -11.75502 -11.57520 -11.37934 -11.20582 -10.91349 -10.82726 -10.80822 -10.56285 -10.43629 -10.12891 -9.96687 -9.64019 -9.19584 -8.94895 -8.43284 -8.12695 -7.71974 -6.04327 -4.08983 0.54658 0.95700 1.88623 2.52378 2.55484 3.29375 3.30230 3.31422 3.37941 3.43344 3.49524 3.93629 4.42650 4.45196 4.65614 4.78442 4.93750 4.96864 5.02816 5.21333 5.29935 5.30402 5.42929 5.48341 5.63067 5.63728 5.77702 5.82642 5.98755 6.04501 6.21883 6.22703 6.46587 6.49200 6.83630 7.03024 7.13817 7.42088 7.50372 7.85350 7.92468 8.22452 8.33476 8.87376 9.02456 9.56011 11.03835 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002579 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.499603 B =10854.467720 C =12015.307434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.053 3.947 16 O -0.328 6.328 17 C 0.506 3.494 18 O -0.498 6.498 19 C -0.181 4.181 20 C 0.005 3.995 21 C -0.209 4.209 22 C 0.262 3.738 23 N -0.862 5.862 24 C -0.213 4.213 25 C 0.072 3.928 26 Cl -0.032 7.032 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.405 0.595 40 H 0.402 0.598 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -0.739 25.580 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.025 4.025 16 O -0.243 6.243 17 C 0.351 3.649 18 O -0.387 6.387 19 C -0.185 4.185 20 C -0.014 4.014 21 C -0.232 4.232 22 C 0.154 3.846 23 N -0.399 5.399 24 C -0.236 4.236 25 C 0.044 3.956 26 Cl -0.002 7.002 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.234 0.766 40 H 0.231 0.769 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.839 -0.511 25.400 25.693 hybrid contribution 0.937 -0.290 -0.102 0.986 sum -2.903 -0.801 25.298 25.476 Atomic orbital electron populations 1.22232 0.96550 1.01677 1.02407 1.21505 0.93748 0.83959 1.03027 1.48205 1.63868 1.13413 1.07139 1.19321 0.96429 0.93706 0.77615 1.21432 0.96876 1.31988 1.06289 0.92390 1.24932 0.97898 0.94881 0.96374 1.69935 1.35700 1.33424 1.14312 0.86488 0.84637 0.77655 0.78600 1.20652 1.21092 1.19850 1.19727 0.79600 0.87129 0.84310 1.90700 1.44587 1.17527 1.86788 1.22927 1.02703 0.92636 0.84213 1.86584 1.79000 1.44709 1.14020 1.20863 0.75070 0.85699 0.83256 1.90906 1.42425 1.18886 1.86514 1.18601 1.14441 0.95942 0.89527 1.21094 0.89262 0.90646 1.00387 1.20460 1.10386 1.02002 0.90321 1.17834 0.89193 0.89467 0.88136 1.42473 1.74403 1.16713 1.06287 1.20286 1.11495 0.93426 0.98432 1.20666 0.95044 0.87407 0.92484 1.98422 1.86200 1.18642 1.96939 0.91839 0.91926 0.93078 0.89478 0.91687 0.94666 0.93709 0.92701 0.88694 0.88757 0.82945 0.84657 0.76617 0.76882 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.63 5.93 -4.05 -0.02 1.61 16 3 N -0.59 -12.55 2.46 -175.07 -0.43 -12.98 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 5 C -0.53 -14.89 9.39 -34.45 -0.32 -15.22 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.86 7.75 -10.98 -0.09 10.77 16 14 O -0.52 -13.37 16.08 -14.10 -0.23 -13.60 16 15 C 0.05 0.89 4.51 36.00 0.16 1.05 16 16 O -0.33 -5.67 8.99 -47.37 -0.43 -6.10 16 17 C 0.51 7.94 7.88 34.41 0.27 8.22 16 18 O -0.50 -8.30 13.75 -19.29 -0.27 -8.57 16 19 C -0.18 -2.38 5.88 -104.94 -0.62 -3.00 16 20 C 0.01 0.06 9.55 -39.57 -0.38 -0.32 16 21 C -0.21 -1.80 9.82 -39.81 -0.39 -2.19 16 22 C 0.26 1.98 6.75 -83.87 -0.57 1.42 16 23 N -0.86 -3.40 9.05 32.40 0.29 -3.11 16 24 C -0.21 -1.86 9.66 -39.39 -0.38 -2.24 16 25 C 0.07 0.84 6.35 -39.08 -0.25 0.59 16 26 Cl -0.03 -0.39 26.02 -51.86 -1.35 -1.74 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 30 H 0.09 1.43 8.07 -51.92 -0.42 1.01 16 31 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.10 1.46 7.40 -51.93 -0.38 1.08 16 36 H 0.09 1.40 7.18 -51.93 -0.37 1.02 16 37 H 0.15 1.79 7.60 -52.49 -0.40 1.39 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.40 0.91 8.83 -40.82 -0.36 0.55 16 40 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -35.29 370.40 -8.48 -43.77 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.05 Total: -1.18 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.32 Total: 6.82 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.60 Total: -41.84 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.92 Total: -28.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.35 Total: -1.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.29 -8.48 -43.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063998446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.889 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds