Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47076 * 2 1 4 4 C 1.46504 * 120.00527 * 269.99842 * 3 2 1 5 5 C 1.50691 * 109.47272 * 270.00408 * 4 3 2 6 6 H 1.07999 * 120.00265 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99545 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00543 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46987 * 90.00227 * 9 7 5 11 11 H 1.48498 * 109.47417 * 209.99802 * 9 7 5 12 12 H 1.48500 * 109.47157 * 330.00550 * 9 7 5 13 13 C 1.34786 * 119.99715 * 90.00342 * 3 2 1 14 14 O 1.21277 * 119.99730 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99772 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.46888 * 179.97438 * 15 13 3 17 17 C 1.34772 * 116.99996 * 180.02562 * 16 15 13 18 18 O 1.21530 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.47295 * 120.00197 * 180.02562 * 17 16 15 20 20 C 1.39886 * 120.08185 * 0.02562 * 19 17 16 21 21 C 1.36549 * 120.05879 * 179.97438 * 20 19 17 22 22 C 1.39277 * 120.23999 * 359.97438 * 21 20 19 23 23 N 1.39015 * 119.91223 * 180.02562 * 22 21 20 24 24 C 1.39163 * 120.17108 * 359.76935 * 22 21 20 25 25 C 1.37813 * 119.93701 * 0.51109 * 24 22 21 26 26 Cl 1.73599 * 120.12228 * 179.74700 * 25 24 22 27 27 H 1.09004 * 109.47369 * 59.99771 * 1 2 3 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47248 * 299.99638 * 1 2 3 30 30 H 1.09007 * 109.47065 * 240.00569 * 2 1 3 31 31 H 1.08997 * 109.47487 * 120.00573 * 2 1 3 32 32 H 1.09002 * 109.46703 * 30.00326 * 4 3 2 33 33 H 1.08998 * 109.46796 * 149.99975 * 4 3 2 34 34 H 0.96997 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47174 * 60.00372 * 15 13 3 36 36 H 1.08994 * 109.47648 * 300.00282 * 15 13 3 37 37 H 1.07998 * 119.97382 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.87445 * 179.97438 * 21 20 19 39 39 H 0.97008 * 120.00081 * 359.97438 * 23 22 21 40 40 H 0.96997 * 120.00219 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.03013 * 180.25385 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1491 2.3897 -2.8778 8 7 3.3487 3.1251 -3.6184 9 14 5.9135 2.0968 -3.4168 10 1 5.9774 0.8756 -4.2592 11 1 6.3921 3.2640 -4.2002 12 1 6.7736 1.9179 -2.2195 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3065 2.1955 3.5760 17 6 2.1350 1.7097 4.8214 18 8 1.7334 0.5737 4.9806 19 6 2.4343 2.5555 5.9896 20 6 2.8961 3.8634 5.8084 21 6 3.1729 4.6472 6.8917 22 6 2.9968 4.1499 8.1807 23 7 3.2801 4.9540 9.2787 24 6 2.5327 2.8520 8.3723 25 6 2.2567 2.0527 7.2841 26 17 1.6839 0.4306 7.5175 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1382 34 1 3.6748 3.5157 -4.4443 35 1 2.6212 0.4185 2.5302 36 1 0.9433 1.0123 2.5299 37 1 3.0339 4.2536 4.8109 38 1 3.5297 5.6565 6.7484 39 1 3.6005 5.8601 9.1466 40 1 3.1583 4.6089 10.1770 41 1 2.3931 2.4701 9.3728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063998446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -113.181591 kcal Electronic energy + Delta-G solvation = -26485.664395 eV Core-core repulsion = 22391.004095 eV Total energy + Delta-G solvation = -4094.660300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74805 -40.73709 -40.02333 -37.73684 -37.32053 -36.91673 -35.56142 -34.92581 -31.99977 -31.74435 -31.00662 -30.00487 -28.28734 -25.15281 -24.53944 -24.06781 -23.85461 -22.02518 -20.27407 -19.31635 -18.63536 -18.47969 -18.12432 -17.77437 -17.67405 -17.44616 -16.97542 -16.25275 -16.00526 -15.61877 -15.43859 -15.03518 -14.90166 -14.75923 -14.58165 -14.42435 -14.06446 -13.83678 -13.58097 -13.48385 -13.27155 -13.06768 -12.99475 -12.68068 -12.57103 -12.49965 -12.25052 -12.20821 -12.02450 -11.75953 -11.69590 -11.55136 -11.05543 -10.69871 -10.63305 -9.97262 -9.53247 -8.73742 -8.22342 -6.36709 -0.31690 0.21503 1.03525 1.30742 1.37877 1.40585 1.50336 1.51317 1.64230 2.34091 2.47359 2.66688 2.82861 3.07643 3.45068 3.64471 3.74294 3.96791 4.00939 4.02082 4.16919 4.24029 4.28794 4.38957 4.59712 4.77606 4.85030 4.92527 4.95165 5.03586 5.08093 5.20148 5.22196 5.33275 5.36600 5.50968 5.55446 5.80909 6.05311 6.33804 6.57852 6.71376 6.72642 6.84691 7.22340 7.37710 8.85153 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002579 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.499603 B =10854.467720 C =12015.307434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.501 3.499 14 O -0.576 6.576 15 C 0.065 3.935 16 O -0.346 6.346 17 C 0.504 3.496 18 O -0.515 6.515 19 C -0.215 4.215 20 C -0.004 4.004 21 C -0.207 4.207 22 C 0.279 3.721 23 N -0.838 5.838 24 C -0.210 4.210 25 C 0.064 3.936 26 Cl -0.044 7.044 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.417 0.583 40 H 0.416 0.584 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -1.275 28.106 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.012 4.012 16 O -0.262 6.262 17 C 0.351 3.649 18 O -0.405 6.405 19 C -0.219 4.219 20 C -0.023 4.023 21 C -0.230 4.230 22 C 0.167 3.833 23 N -0.375 5.375 24 C -0.233 4.233 25 C 0.036 3.964 26 Cl -0.015 7.015 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.135 -1.068 27.980 28.175 hybrid contribution 0.706 -0.010 -0.733 1.018 sum -2.429 -1.077 27.247 27.376 Atomic orbital electron populations 1.22172 0.94347 1.03749 1.01823 1.21853 0.95549 0.81047 1.04333 1.48204 1.63659 1.15230 1.05695 1.18792 0.95583 0.91692 0.79712 1.21693 0.97801 1.32176 1.06603 0.92840 1.25843 1.02398 0.94413 0.96380 1.70051 1.37758 1.34124 1.14771 0.85410 0.78975 0.78205 0.78190 1.18826 1.20566 1.19830 1.20501 0.78287 0.86644 0.85745 1.90662 1.47078 1.20044 1.87739 1.22770 1.04504 0.92037 0.81894 1.86591 1.79525 1.45306 1.14810 1.21346 0.74564 0.85960 0.83026 1.90875 1.43607 1.19535 1.86483 1.18592 1.17613 0.96640 0.89055 1.21024 0.90076 0.90510 1.00739 1.20677 1.09617 1.02698 0.89999 1.17848 0.87484 0.89275 0.88706 1.42510 1.72164 1.16819 1.06022 1.20538 1.10618 0.93471 0.98694 1.20796 0.95707 0.87232 0.92677 1.98410 1.86459 1.19719 1.96895 0.93602 0.88443 0.92513 0.89953 0.88573 0.95254 0.98144 0.92350 0.86778 0.86288 0.84449 0.82230 0.75143 0.75305 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.46 16 2 C 0.09 2.95 5.93 86.38 0.51 3.46 16 3 N -0.60 -25.88 2.46 -826.17 -2.03 -27.91 16 4 C 0.26 14.32 5.16 85.63 0.44 14.76 16 5 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 9 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.50 22.11 7.75 87.65 0.68 22.79 16 14 O -0.58 -31.25 16.08 15.78 0.25 -30.99 16 15 C 0.06 2.18 4.51 71.23 0.32 2.50 16 16 O -0.35 -12.31 8.99 -50.44 -0.45 -12.77 16 17 C 0.50 16.08 7.88 70.20 0.55 16.63 16 18 O -0.51 -17.12 13.75 19.74 0.27 -16.85 16 19 C -0.21 -5.67 5.88 -20.07 -0.12 -5.79 16 20 C 0.00 -0.09 9.55 22.27 0.21 0.12 16 21 C -0.21 -3.16 9.82 22.12 0.22 -2.94 16 22 C 0.28 3.37 6.75 38.48 0.26 3.62 16 23 N -0.84 -3.15 9.05 -51.40 -0.47 -3.62 16 24 C -0.21 -3.14 9.66 22.39 0.22 -2.92 16 25 C 0.06 1.44 6.35 22.60 0.14 1.58 16 26 Cl -0.04 -1.06 26.02 -2.72 -0.07 -1.13 16 27 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 30 H 0.08 2.66 8.07 -2.38 -0.02 2.65 16 31 H 0.10 2.43 6.44 -2.39 -0.02 2.41 16 32 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.11 3.39 7.40 -2.39 -0.02 3.37 16 36 H 0.12 3.39 7.18 -2.39 -0.02 3.37 16 37 H 0.14 3.45 7.60 -2.91 -0.02 3.42 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.42 0.09 8.83 -92.70 -0.82 -0.73 16 40 H 0.42 -0.08 8.83 -92.71 -0.82 -0.89 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -80.76 370.40 4.15 -76.61 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -0.54 Total: 5.45 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 4.88 Total: 19.94 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.21 Total: -87.49 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: 0.07 Total: -60.61 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -80.76 4.15 -76.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063998446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.573 kcal (2) G-P(sol) polarization free energy of solvation -80.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds