Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 114.00025 * 2 1 4 4 C 1.52999 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46875 * 65.00194 * 4 3 2 6 6 C 1.46504 * 120.00323 * 269.99905 * 5 4 3 7 7 C 1.50699 * 109.47245 * 263.67942 * 6 5 4 8 8 H 1.08005 * 120.00228 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00482 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99414 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00220 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46665 * 90.00836 * 11 9 7 13 13 H 1.48494 * 109.47006 * 210.00022 * 11 9 7 14 14 H 1.48499 * 109.47536 * 330.00603 * 11 9 7 15 15 C 1.34781 * 120.00484 * 90.00288 * 5 4 3 16 16 O 1.21364 * 119.99167 * 354.61978 * 15 5 4 17 17 C 1.49347 * 120.00364 * 174.62272 * 15 5 4 18 18 O 1.21371 * 120.00109 * 0.31687 * 17 15 5 19 19 N 1.34779 * 119.99662 * 180.31558 * 17 15 5 20 20 C 1.39765 * 119.99517 * 184.82189 * 19 17 15 21 21 C 1.38928 * 120.05890 * 144.89217 * 20 19 17 22 22 C 1.38088 * 119.93441 * 180.23010 * 21 20 19 23 23 C 1.38404 * 120.06245 * 359.48851 * 22 21 20 24 24 Cl 1.73598 * 119.93789 * 180.27477 * 23 22 21 25 25 C 1.38397 * 120.12507 * 0.25475 * 23 22 21 26 26 C 1.38091 * 120.06619 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47392 * 299.99550 * 1 2 3 28 28 H 1.09000 * 109.47638 * 59.99689 * 1 2 3 29 29 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46826 * 60.00008 * 3 2 1 31 31 H 1.08996 * 109.46933 * 300.00452 * 3 2 1 32 32 H 1.08996 * 109.46798 * 305.00382 * 4 3 2 33 33 H 1.08999 * 109.46825 * 184.99924 * 4 3 2 34 34 H 1.09003 * 109.46772 * 23.67171 * 6 5 4 35 35 H 1.08990 * 109.47376 * 143.67615 * 6 5 4 36 36 H 0.96999 * 119.99638 * 180.02562 * 10 9 7 37 37 H 0.97001 * 120.00401 * 4.82696 * 19 17 15 38 38 H 1.08004 * 120.03142 * 359.97046 * 21 20 19 39 39 H 1.07998 * 119.96766 * 179.76430 * 22 21 20 40 40 H 1.07997 * 119.96958 * 180.02562 * 25 23 22 41 41 H 1.07994 * 120.03670 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1051 -0.8919 -1.3429 7 6 5.5390 -1.2849 -1.0966 8 1 6.2798 -0.5256 -0.8936 9 6 5.9053 -2.6137 -1.1303 10 7 5.0033 -3.5382 -1.3780 11 14 7.6827 -3.1007 -0.8257 12 1 7.8892 -3.3375 0.6257 13 1 7.9916 -4.3427 -1.5788 14 1 8.5802 -2.0090 -1.2818 15 6 4.2614 1.3339 -2.3219 16 8 4.0614 2.5302 -2.2793 17 6 4.8241 0.7143 -3.5587 18 8 5.0187 -0.4829 -3.6033 19 7 5.1159 1.4846 -4.6255 20 6 5.5470 0.8942 -5.8167 21 6 5.1764 1.4417 -7.0386 22 6 5.5999 0.8535 -8.2140 23 6 6.4014 -0.2741 -8.1755 24 17 6.9378 -1.0068 -9.6551 25 6 6.7765 -0.8185 -6.9596 26 6 6.3513 -0.2380 -5.7811 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.4663 -1.3605 -0.5942 35 1 3.8033 -1.2227 -2.3365 36 1 5.2609 -4.4731 -1.4013 37 1 5.0268 2.4487 -4.5665 38 1 4.5543 2.3240 -7.0692 39 1 5.3089 1.2764 -9.1642 40 1 7.4024 -1.6982 -6.9325 41 1 6.6446 -0.6629 -4.8326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121581031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -71.975706 kcal Electronic energy + Delta-G solvation = -27489.099785 eV Core-core repulsion = 23396.226306 eV Total energy + Delta-G solvation = -4092.873478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64209 -39.25939 -37.96146 -37.31523 -36.44168 -35.42858 -34.07355 -32.52615 -31.03759 -30.02509 -29.35639 -27.07107 -26.17040 -24.70815 -23.09609 -22.85178 -22.56967 -21.11191 -19.32313 -17.76745 -17.01734 -16.73876 -16.59993 -16.28631 -15.83775 -15.47320 -15.33621 -15.02677 -14.56102 -14.51416 -14.27200 -14.09927 -13.57851 -13.43305 -13.35971 -13.04904 -12.38294 -12.25587 -12.10099 -11.90642 -11.73006 -11.62774 -11.53193 -11.44784 -10.98477 -10.89467 -10.87160 -10.73408 -10.44360 -9.99858 -9.94344 -9.66279 -9.44993 -9.04925 -8.70756 -8.25902 -8.01779 -7.84258 -5.98913 -4.01062 1.08611 1.34007 2.08280 2.16263 2.81740 3.31259 3.38345 3.40759 3.60663 3.88553 4.00741 4.10388 4.47174 4.79404 4.89488 4.95894 5.28057 5.30450 5.37484 5.41258 5.42191 5.53596 5.56890 5.57136 5.58281 5.80209 5.89136 5.93066 6.04238 6.20561 6.29937 6.35878 6.49596 6.67909 6.96996 7.31677 7.40546 7.50101 7.55853 7.90156 8.10094 8.22305 8.30110 8.61415 8.98769 9.60571 11.09841 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.003766 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.258473 B = 7432.782359 C = 9277.940339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.118 3.882 5 N -0.549 5.549 6 C 0.233 3.767 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.071 3.929 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.506 3.494 16 O -0.565 6.565 17 C 0.488 3.512 18 O -0.424 6.424 19 N -0.664 5.664 20 C 0.164 3.836 21 C -0.138 4.138 22 C -0.094 4.094 23 C -0.056 4.056 24 Cl -0.081 7.081 25 C -0.088 4.088 26 C -0.108 4.108 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.417 0.583 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 10.062 -7.697 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.278 5.278 6 C 0.114 3.886 7 C -0.555 4.555 8 H 0.070 0.930 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.289 3.711 16 O -0.447 6.447 17 C 0.269 3.731 18 O -0.290 6.290 19 N -0.313 5.313 20 C 0.069 3.931 21 C -0.159 4.159 22 C -0.113 4.113 23 C -0.083 4.083 24 Cl -0.053 7.053 25 C -0.107 4.107 26 C -0.129 4.129 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.254 0.746 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.912 9.282 -7.719 12.419 hybrid contribution 0.747 0.201 0.071 0.777 sum -2.164 9.484 -7.648 12.374 Atomic orbital electron populations 1.22689 0.81936 1.02554 0.99194 1.88068 1.18861 1.27199 1.95218 1.22982 0.94763 0.85187 1.00105 1.21539 0.91663 0.99789 0.87521 1.48247 1.59406 1.11077 1.09115 1.19972 0.97535 0.70774 1.00308 1.21217 0.93651 0.92175 1.48441 0.92975 1.24777 0.96995 0.96320 0.95106 1.69926 1.33176 1.00652 1.48835 0.86639 0.85431 0.78059 0.78070 1.20793 1.21171 1.20097 1.19727 0.80214 0.86262 0.84921 1.90647 1.55861 1.14907 1.83322 1.20442 0.80622 0.87494 0.84527 1.91003 1.44950 1.13237 1.79821 1.43269 1.66564 1.11356 1.10076 1.17842 0.94731 0.95147 0.85420 1.20844 1.02368 1.02393 0.90319 1.20734 0.97458 0.94572 0.98523 1.20875 1.02926 0.97444 0.87104 1.98348 1.89338 1.82752 1.34833 1.20994 0.99728 0.99972 0.90042 1.21492 0.95770 0.95825 0.99769 0.94628 0.94611 0.89744 0.92826 0.93167 0.88731 0.89107 0.93634 0.92073 0.92904 0.74590 0.84809 0.84868 0.84661 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.48 9.65 -35.23 -0.34 -6.82 16 3 C 0.05 0.72 6.28 37.16 0.23 0.96 16 4 C 0.12 2.03 5.74 -4.05 -0.02 2.01 16 5 N -0.55 -11.43 2.44 -175.61 -0.43 -11.86 16 6 C 0.23 5.75 4.52 -5.19 -0.02 5.73 16 7 C -0.52 -13.80 7.79 -34.44 -0.27 -14.07 16 8 H 0.05 1.40 7.81 -52.48 -0.41 0.99 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 10 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.51 10.15 7.67 -11.63 -0.09 10.06 16 16 O -0.57 -11.02 16.12 5.48 0.09 -10.93 16 17 C 0.49 9.55 7.57 -11.63 -0.09 9.47 16 18 O -0.42 -9.70 9.57 5.48 0.05 -9.65 16 19 N -0.66 -10.33 5.32 -10.29 -0.05 -10.38 16 20 C 0.16 2.44 6.29 -83.73 -0.53 1.92 16 21 C -0.14 -1.66 9.97 -39.38 -0.39 -2.05 16 22 C -0.09 -1.08 9.82 -39.58 -0.39 -1.47 16 23 C -0.06 -0.72 6.32 -39.46 -0.25 -0.97 16 24 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.46 16 25 C -0.09 -1.26 9.82 -39.58 -0.39 -1.65 16 26 C -0.11 -1.76 8.69 -39.38 -0.34 -2.10 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 33 H 0.09 1.42 7.50 -51.93 -0.39 1.03 16 34 H 0.05 1.21 7.25 -51.93 -0.38 0.83 16 35 H 0.06 1.67 5.84 -51.93 -0.30 1.36 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.42 5.48 8.30 -40.82 -0.34 5.14 16 38 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.16 2.95 6.24 -52.49 -0.33 2.62 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -31.04 367.35 -7.55 -38.59 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.08 Total: 5.31 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -1.53 Total: 11.21 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.25 Total: -47.15 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.20 Total: -27.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.04 -7.55 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121581031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.387 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds