Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.46831 * 2 1 4 4 C 1.35953 * 116.99462 * 180.02562 * 3 2 1 5 5 C 1.38535 * 120.08265 * 0.02562 * 4 3 2 6 6 C 1.38352 * 120.00655 * 180.02562 * 5 4 3 7 7 Cl 1.73595 * 119.91814 * 179.97438 * 6 5 4 8 8 C 1.38412 * 120.16614 * 359.97438 * 6 5 4 9 9 C 1.38163 * 120.16012 * 359.72803 * 8 6 5 10 10 C 1.38783 * 119.99046 * 0.56807 * 9 8 6 11 11 N 1.39922 * 120.08256 * 179.70447 * 10 9 8 12 12 C 1.34774 * 120.00160 * 34.01266 * 11 10 9 13 13 O 1.21392 * 119.99729 * 5.66015 * 12 11 10 14 14 C 1.49321 * 120.00006 * 185.66031 * 12 11 10 15 15 O 1.21368 * 120.00180 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00006 * 179.97438 * 14 12 11 17 17 C 1.46506 * 120.00140 * 180.02562 * 16 14 12 18 18 H 1.08997 * 109.46962 * 325.00247 * 17 16 14 19 19 C 1.53004 * 109.47210 * 84.99834 * 17 16 14 20 20 C 1.50698 * 109.47249 * 205.00079 * 17 16 14 21 21 H 1.07999 * 119.99861 * 334.83753 * 20 17 16 22 22 C 1.37872 * 120.00431 * 154.83749 * 20 17 16 23 23 N 1.31513 * 120.00620 * 174.92018 * 22 20 17 24 24 Si 1.86803 * 119.99758 * 354.92335 * 22 20 17 25 25 H 1.48503 * 109.47059 * 275.04610 * 24 22 20 26 26 H 1.48503 * 109.47160 * 35.03971 * 24 22 20 27 27 H 1.48496 * 109.47496 * 155.04310 * 24 22 20 28 28 H 1.09002 * 109.47279 * 300.00062 * 1 2 3 29 29 H 1.08995 * 109.47475 * 60.00229 * 1 2 3 30 30 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47172 * 239.99606 * 2 1 3 32 32 H 1.09002 * 109.47103 * 119.99615 * 2 1 3 33 33 H 1.07994 * 119.99941 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.91912 * 180.02562 * 8 6 5 35 35 H 1.07999 * 120.00024 * 180.29978 * 9 8 6 36 36 H 0.96998 * 119.99720 * 214.01445 * 11 10 9 37 37 H 0.96999 * 120.00419 * 359.97438 * 16 14 12 38 38 H 1.09007 * 109.46585 * 54.99012 * 19 17 16 39 39 H 1.08992 * 109.47317 * 174.98716 * 19 17 16 40 40 H 1.09000 * 109.47066 * 294.99432 * 19 17 16 41 41 H 0.96993 * 120.00444 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3541 1.5254 -0.0005 5 6 4.1995 0.4280 -0.0016 6 6 5.5709 0.6110 -0.0016 7 17 6.6282 -0.7658 -0.0023 8 6 6.1020 1.8892 -0.0011 9 6 5.2652 2.9886 -0.0063 10 6 3.8886 2.8126 0.0000 11 7 3.0394 3.9247 0.0010 12 6 3.3966 5.0460 -0.6560 13 8 4.4042 5.0579 -1.3328 14 6 2.5528 6.2735 -0.5512 15 8 1.5456 6.2617 0.1259 16 7 2.9102 7.3949 -1.2078 17 6 2.0827 8.5995 -1.1046 18 1 1.0327 8.3144 -1.0395 19 6 2.4770 9.3833 0.1489 20 6 2.2949 9.4606 -2.3229 21 1 3.2176 9.3904 -2.8798 22 6 1.3112 10.3381 -2.7268 23 7 1.5341 11.1603 -3.7287 24 14 -0.3386 10.3593 -1.8507 25 1 -1.2231 9.3197 -2.4357 26 1 -0.1356 10.0806 -0.4063 27 1 -0.9686 11.6941 -2.0137 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7882 -0.5705 -0.0016 34 1 7.1731 2.0274 -0.0015 35 1 5.6824 3.9847 -0.0107 36 1 2.1937 3.8886 0.4746 37 1 3.7158 7.4048 -1.7480 38 1 3.5468 9.5913 0.1257 39 1 1.9248 10.3225 0.1788 40 1 2.2405 8.7943 1.0351 41 1 0.8419 11.7773 -4.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122917339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -88.672092 kcal Electronic energy + Delta-G solvation = -26569.254294 eV Core-core repulsion = 22475.656806 eV Total energy + Delta-G solvation = -4093.597488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20886 -40.02531 -38.49126 -37.83442 -36.66496 -35.45630 -34.61254 -32.43671 -32.19967 -30.61340 -30.01879 -29.31891 -25.44350 -25.06933 -24.50363 -22.48753 -22.27082 -20.69506 -19.79126 -19.12822 -18.50778 -17.40301 -16.91486 -16.59846 -16.35197 -15.82210 -15.63003 -15.54708 -15.11668 -14.57286 -14.22678 -14.12324 -13.93886 -13.46907 -13.33187 -13.01977 -12.99789 -12.72958 -12.65491 -12.41148 -12.36198 -11.87243 -11.67428 -11.65061 -11.39028 -11.27667 -11.19191 -11.04722 -10.90634 -10.53224 -10.39561 -9.93115 -9.32383 -9.27610 -9.00137 -8.77384 -8.38819 -8.12383 -6.27494 -4.31899 0.65742 0.96668 1.71619 1.77788 2.48641 2.74194 3.21523 3.24178 3.30304 3.35377 3.58073 3.92713 4.27292 4.36192 4.52976 4.54285 4.67990 4.75193 4.83769 4.86156 5.03742 5.12155 5.21126 5.38597 5.42515 5.45125 5.70031 5.76671 5.88254 6.07198 6.20961 6.35413 6.41035 6.54695 6.75977 6.85592 6.96989 7.09655 7.19864 7.35904 7.69721 8.00300 8.37442 8.51578 8.74385 9.31810 10.84122 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002529 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.806800 B =11070.321034 C =12229.450356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.308 6.308 4 C 0.122 3.878 5 C -0.184 4.184 6 C -0.012 4.012 7 Cl -0.069 7.069 8 C -0.124 4.124 9 C -0.073 4.073 10 C 0.129 3.871 11 N -0.642 5.642 12 C 0.509 3.491 13 O -0.503 6.503 14 C 0.496 3.504 15 O -0.536 6.536 16 N -0.662 5.662 17 C 0.233 3.767 18 H 0.052 0.948 19 C -0.152 4.152 20 C -0.536 4.536 21 H 0.082 0.918 22 C 0.083 3.917 23 N -0.886 5.886 24 Si 0.871 3.129 25 H -0.272 1.272 26 H -0.257 1.257 27 H -0.284 1.284 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.427 0.573 37 H 0.408 0.592 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -24.479 9.733 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.222 6.222 4 C 0.074 3.926 5 C -0.204 4.204 6 C -0.039 4.039 7 Cl -0.040 7.040 8 C -0.143 4.143 9 C -0.093 4.093 10 C 0.033 3.967 11 N -0.289 5.289 12 C 0.292 3.708 13 O -0.376 6.376 14 C 0.275 3.725 15 O -0.415 6.415 16 N -0.311 5.311 17 C 0.131 3.869 18 H 0.070 0.930 19 C -0.211 4.211 20 C -0.574 4.574 21 H 0.100 0.900 22 C -0.122 4.122 23 N -0.522 5.522 24 Si 0.697 3.303 25 H -0.198 1.198 26 H -0.181 1.181 27 H -0.210 1.210 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.171 0.829 36 H 0.266 0.734 37 H 0.243 0.757 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.239 -24.170 9.585 26.345 hybrid contribution -0.745 -0.351 0.222 0.853 sum 3.494 -24.521 9.807 26.639 Atomic orbital electron populations 1.21790 0.92302 1.02989 1.03991 1.22867 0.96258 0.81384 1.01569 1.86111 1.17635 1.29898 1.88558 1.18522 0.83081 0.91867 0.99172 1.20848 0.91887 0.98650 1.09032 1.20599 0.90361 0.88544 1.04437 1.98371 1.65762 1.42988 1.96889 1.20862 1.00891 0.89654 1.02916 1.21021 0.90200 1.00398 0.97682 1.17146 0.90223 0.83948 1.05346 1.43077 1.23198 1.10863 1.51802 1.20875 0.86188 0.84732 0.79003 1.90759 1.25842 1.83656 1.37351 1.19695 0.85914 0.84407 0.82480 1.90731 1.25843 1.84183 1.40754 1.46431 1.28252 1.10812 1.45604 1.19279 0.91357 0.80835 0.95461 0.93023 1.22315 1.01232 1.00223 0.97303 1.20964 1.04943 1.21096 1.10387 0.89979 1.24865 0.98383 0.94549 0.94418 1.69870 1.34394 1.21207 1.26694 0.86973 0.84167 0.77733 0.81412 1.19788 1.18124 1.21023 0.91258 0.91213 0.90231 0.91750 0.91776 0.84010 0.84165 0.82935 0.73442 0.75669 0.93183 0.92131 0.95029 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.38 5.46 37.16 0.20 0.59 16 3 O -0.31 -3.26 9.69 -19.59 -0.19 -3.45 16 4 C 0.12 1.35 6.70 -39.05 -0.26 1.09 16 5 C -0.18 -1.75 8.81 -39.43 -0.35 -2.10 16 6 C -0.01 -0.12 6.32 -39.48 -0.25 -0.37 16 7 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 8 C -0.12 -1.25 9.82 -39.54 -0.39 -1.64 16 9 C -0.07 -0.86 8.65 -39.41 -0.34 -1.20 16 10 C 0.13 1.63 6.28 -83.54 -0.52 1.11 16 11 N -0.64 -8.88 5.18 -10.18 -0.05 -8.93 16 12 C 0.51 8.29 7.61 -11.65 -0.09 8.21 16 13 O -0.50 -8.69 14.23 5.46 0.08 -8.61 16 14 C 0.50 9.39 7.85 -11.65 -0.09 9.30 16 15 O -0.54 -11.08 16.15 5.48 0.09 -10.99 16 16 N -0.66 -13.41 5.06 -55.40 -0.28 -13.69 16 17 C 0.23 5.39 2.12 -69.08 -0.15 5.24 16 18 H 0.05 1.28 5.34 -51.93 -0.28 1.00 16 19 C -0.15 -3.22 9.10 37.16 0.34 -2.88 16 20 C -0.54 -14.20 9.06 -34.44 -0.31 -14.51 16 21 H 0.08 2.31 8.02 -52.49 -0.42 1.89 16 22 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 23 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 24 Si 0.87 20.75 26.20 -169.99 -4.45 16.29 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.89 6.15 56.52 0.35 -5.54 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 33 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.89 6.48 -52.49 -0.34 1.55 16 36 H 0.43 5.56 8.04 -40.82 -0.33 5.24 16 37 H 0.41 7.81 8.03 -40.82 -0.33 7.48 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.30 6.74 -51.93 -0.35 0.95 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -30.32 364.66 -6.86 -37.18 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.90 Total: 9.33 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.93 Total: 4.45 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.44 Total: -47.59 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.02 Total: -23.05 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.45 Total: 16.29 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.32 -6.86 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122917339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.491 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds