Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47028 * 2 1 4 4 C 1.35958 * 116.99981 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.07662 * 0.02562 * 4 3 2 6 6 C 1.38344 * 120.00340 * 179.97438 * 5 4 3 7 7 Cl 1.73597 * 119.91691 * 179.97438 * 6 5 4 8 8 C 1.38417 * 120.16925 * 0.02562 * 6 5 4 9 9 C 1.38161 * 120.15890 * 359.74028 * 8 6 5 10 10 C 1.38793 * 119.98974 * 0.51595 * 9 8 6 11 11 N 1.39915 * 120.07999 * 179.76929 * 10 9 8 12 12 C 1.34771 * 120.00482 * 19.46639 * 11 10 9 13 13 O 1.21390 * 119.99740 * 5.86604 * 12 11 10 14 14 C 1.49324 * 120.00053 * 185.85902 * 12 11 10 15 15 O 1.21362 * 120.00057 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99895 * 179.97438 * 14 12 11 17 17 C 1.46505 * 120.00082 * 179.97438 * 16 14 12 18 18 H 1.09004 * 109.46864 * 35.00371 * 17 16 14 19 19 C 1.52998 * 109.47174 * 275.00383 * 17 16 14 20 20 C 1.50694 * 109.46961 * 155.00205 * 17 16 14 21 21 H 1.07996 * 120.00294 * 5.67139 * 20 17 16 22 22 C 1.37884 * 119.99747 * 185.67622 * 20 17 16 23 23 N 1.31519 * 119.99802 * 196.34369 * 22 20 17 24 24 Si 1.86793 * 120.00077 * 16.61767 * 22 20 17 25 25 H 1.48500 * 109.47288 * 179.72866 * 24 22 20 26 26 H 1.48505 * 109.47159 * 299.72345 * 24 22 20 27 27 H 1.48501 * 109.47323 * 59.72412 * 24 22 20 28 28 H 1.09001 * 109.47199 * 60.00551 * 1 2 3 29 29 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47367 * 300.00503 * 1 2 3 31 31 H 1.08997 * 109.47688 * 239.99924 * 2 1 3 32 32 H 1.09001 * 109.47199 * 119.99449 * 2 1 3 33 33 H 1.07993 * 120.00229 * 359.95655 * 5 4 3 34 34 H 1.08004 * 119.92086 * 180.02562 * 8 6 5 35 35 H 1.07996 * 120.00185 * 180.25365 * 9 8 6 36 36 H 0.97005 * 119.99077 * 199.46933 * 11 10 9 37 37 H 0.97003 * 119.99902 * 0.02562 * 16 14 12 38 38 H 1.08994 * 109.47208 * 186.37855 * 19 17 16 39 39 H 1.09001 * 109.47081 * 306.37592 * 19 17 16 40 40 H 1.09001 * 109.47398 * 66.37985 * 19 17 16 41 41 H 0.97001 * 119.99533 * 355.10067 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1996 0.4280 0.0005 6 6 5.5709 0.6110 0.0005 7 17 6.6281 -0.7659 0.0012 8 6 6.1020 1.8892 0.0011 9 6 5.2653 2.9886 -0.0038 10 6 3.8886 2.8126 0.0016 11 7 3.0395 3.9247 0.0016 12 6 3.5037 5.1270 -0.3923 13 8 4.6248 5.2254 -0.8473 14 6 2.6389 6.3381 -0.2692 15 8 1.5182 6.2398 0.1860 16 7 3.1033 7.5407 -0.6626 17 6 2.2547 8.7288 -0.5423 18 1 1.6387 8.6462 0.3532 19 6 1.3528 8.8381 -1.7734 20 6 3.1217 9.9574 -0.4441 21 1 4.1921 9.8738 -0.5605 22 6 2.5483 11.1885 -0.2055 23 7 3.2327 12.2881 -0.4342 24 14 0.8023 11.2944 0.4498 25 1 0.4252 12.7198 0.6259 26 1 -0.1277 10.6517 -0.5132 27 1 0.7212 10.5956 1.7577 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.7882 -0.5705 0.0008 34 1 7.1732 2.0274 0.0007 35 1 5.6825 3.9847 -0.0074 36 1 2.1166 3.8301 0.2851 37 1 3.9992 7.6193 -1.0261 38 1 0.8037 9.7790 -1.7392 39 1 1.9639 8.8067 -2.6754 40 1 0.6482 8.0065 -1.7826 41 1 4.1632 12.2331 -0.7026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122917521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -85.063090 kcal Electronic energy + Delta-G solvation = -26553.131647 eV Core-core repulsion = 22459.690657 eV Total energy + Delta-G solvation = -4093.440990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30142 -40.07522 -38.56848 -37.83139 -36.65069 -35.52210 -34.68816 -32.52315 -32.21645 -30.62310 -29.93633 -29.33644 -25.32405 -24.82535 -24.50247 -22.48117 -22.31738 -20.67850 -19.79407 -19.18437 -18.51270 -17.59692 -17.25732 -16.62586 -16.48555 -15.94115 -15.62910 -15.56241 -15.04596 -14.51949 -14.23933 -14.04985 -13.94568 -13.47073 -13.29519 -13.02928 -13.02199 -12.83105 -12.79014 -12.35117 -12.27936 -11.96123 -11.87133 -11.70646 -11.54211 -11.36772 -11.11707 -11.04783 -10.55992 -10.52444 -10.10956 -9.84495 -9.29782 -9.16544 -8.99168 -8.47625 -8.40017 -8.06258 -6.64999 -4.29519 0.65098 0.96813 1.67721 1.79686 2.42042 2.71704 3.22758 3.33009 3.39822 3.53756 3.55135 3.87526 4.35395 4.36102 4.50720 4.52745 4.67803 4.74466 4.81822 4.84632 5.01525 5.11113 5.20002 5.39683 5.42238 5.46669 5.67432 5.73360 5.90951 6.04804 6.25340 6.40311 6.41335 6.52860 6.77493 6.84100 6.95527 7.10700 7.20049 7.45983 7.68221 8.13600 8.21977 8.43111 8.72889 9.40074 10.76422 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.002484 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.129726 B =11268.960651 C =12647.304792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.114 3.886 5 C -0.181 4.181 6 C -0.018 4.018 7 Cl -0.071 7.071 8 C -0.120 4.120 9 C -0.093 4.093 10 C 0.132 3.868 11 N -0.636 5.636 12 C 0.509 3.491 13 O -0.502 6.502 14 C 0.496 3.504 15 O -0.534 6.534 16 N -0.660 5.660 17 C 0.239 3.761 18 H 0.047 0.953 19 C -0.163 4.163 20 C -0.621 4.621 21 H 0.065 0.935 22 C 0.040 3.960 23 N -0.894 5.894 24 Si 1.042 2.958 25 H -0.282 1.282 26 H -0.270 1.270 27 H -0.279 1.279 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.172 0.828 36 H 0.429 0.571 37 H 0.407 0.593 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -27.391 0.939 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.225 6.225 4 C 0.066 3.934 5 C -0.201 4.201 6 C -0.046 4.046 7 Cl -0.042 7.042 8 C -0.140 4.140 9 C -0.114 4.114 10 C 0.036 3.964 11 N -0.281 5.281 12 C 0.292 3.708 13 O -0.376 6.376 14 C 0.275 3.725 15 O -0.412 6.412 16 N -0.309 5.309 17 C 0.137 3.863 18 H 0.064 0.936 19 C -0.222 4.222 20 C -0.658 4.658 21 H 0.083 0.917 22 C -0.167 4.167 23 N -0.527 5.527 24 Si 0.870 3.130 25 H -0.208 1.208 26 H -0.196 1.196 27 H -0.205 1.205 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.268 0.732 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.214 -26.145 1.339 26.207 hybrid contribution 1.498 -1.611 -0.480 2.251 sum 0.284 -27.755 0.859 27.770 Atomic orbital electron populations 1.21791 0.92309 1.03009 1.03964 1.22855 0.96209 0.81334 1.01579 1.86070 1.17678 1.29994 1.88800 1.18385 0.83049 0.91700 1.00289 1.20813 0.91872 0.98548 1.08838 1.20622 0.90356 0.88537 1.05046 1.98367 1.65807 1.43074 1.96932 1.20940 1.00957 0.89646 1.02424 1.21609 0.90092 1.01542 0.98115 1.17277 0.90420 0.83831 1.04905 1.43073 1.15683 1.06067 1.63274 1.20872 0.87625 0.84702 0.77584 1.90646 1.19636 1.85575 1.41774 1.19655 0.87041 0.84570 0.81260 1.90735 1.19306 1.85584 1.45615 1.46247 1.19352 1.06440 1.58896 1.19244 0.90357 0.81923 0.94808 0.93567 1.22537 0.99147 1.00784 0.99720 1.22063 0.94923 0.92023 1.56838 0.91706 1.25712 1.06159 0.91411 0.93443 1.70872 1.11008 1.29232 1.41573 0.84085 0.75075 0.76396 0.77491 1.20760 1.19645 1.20503 0.91262 0.90223 0.91217 0.91784 0.91767 0.84041 0.84212 0.81062 0.73243 0.75769 0.91370 0.93346 0.94961 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.37 5.46 37.16 0.20 0.58 16 3 O -0.31 -3.18 9.49 -19.61 -0.19 -3.37 16 4 C 0.11 1.26 6.70 -39.05 -0.26 0.99 16 5 C -0.18 -1.73 8.81 -39.43 -0.35 -2.07 16 6 C -0.02 -0.18 6.32 -39.48 -0.25 -0.43 16 7 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 8 C -0.12 -1.26 9.82 -39.54 -0.39 -1.65 16 9 C -0.09 -1.16 8.78 -39.40 -0.35 -1.50 16 10 C 0.13 1.68 6.52 -83.54 -0.54 1.14 16 11 N -0.64 -8.78 5.31 -10.18 -0.05 -8.83 16 12 C 0.51 8.21 7.73 -11.65 -0.09 8.12 16 13 O -0.50 -8.44 13.38 5.46 0.07 -8.37 16 14 C 0.50 9.36 7.85 -11.64 -0.09 9.27 16 15 O -0.53 -10.97 16.15 5.49 0.09 -10.88 16 16 N -0.66 -13.47 5.06 -55.40 -0.28 -13.75 16 17 C 0.24 5.59 2.14 -69.08 -0.15 5.44 16 18 H 0.05 1.14 6.24 -51.93 -0.32 0.82 16 19 C -0.16 -3.56 9.15 37.16 0.34 -3.22 16 20 C -0.62 -16.50 9.01 -34.44 -0.31 -16.81 16 21 H 0.06 1.82 7.96 -52.49 -0.42 1.40 16 22 C 0.04 1.10 5.31 -17.82 -0.09 1.00 16 23 N -0.89 -26.20 13.70 55.43 0.76 -25.44 16 24 Si 1.04 24.26 26.27 -169.99 -4.46 19.79 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -5.82 5.72 56.52 0.32 -5.50 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.17 2.31 5.41 -52.49 -0.28 2.03 16 36 H 0.43 5.60 7.73 -40.82 -0.32 5.29 16 37 H 0.41 7.87 8.00 -40.82 -0.33 7.55 16 38 H 0.07 1.52 4.80 -51.93 -0.25 1.27 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -29.88 361.38 -6.88 -36.76 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.81 Total: 10.41 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.95 Total: 0.37 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.42 Total: -48.02 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.02 Total: -22.62 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.46 Total: 19.79 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.88 -6.88 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122917521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds