Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46917 * 2 1 4 4 C 1.46499 * 119.99949 * 274.85008 * 3 2 1 5 5 C 1.50696 * 109.47106 * 263.29224 * 4 3 2 6 6 H 1.08007 * 120.00192 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00013 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.46950 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47073 * 210.00225 * 9 7 5 12 12 H 1.48502 * 109.47207 * 329.99729 * 9 7 5 13 13 C 1.34776 * 119.99946 * 94.84745 * 3 2 1 14 14 O 1.21359 * 120.00196 * 354.71364 * 13 3 2 15 15 C 1.49332 * 119.99859 * 174.71940 * 13 3 2 16 16 O 1.21391 * 120.00039 * 0.55924 * 15 13 3 17 17 N 1.34779 * 120.00402 * 180.56082 * 15 13 3 18 18 C 1.39881 * 120.00445 * 185.73693 * 17 15 13 19 19 C 1.38825 * 120.08864 * 23.53507 * 18 17 15 20 20 C 1.38159 * 119.99787 * 179.70351 * 19 18 17 21 21 C 1.38306 * 120.17993 * 0.59839 * 20 19 18 22 22 C 1.38330 * 120.18036 * 359.67500 * 21 20 19 23 23 Cl 1.73602 * 120.00131 * 180.02562 * 22 21 20 24 24 C 1.38653 * 120.00331 * 0.02875 * 22 21 20 25 25 O 1.35977 * 120.09646 * 180.02562 * 24 22 21 26 26 C 1.42902 * 116.99912 * 269.97574 * 25 24 22 27 27 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47590 * 299.99977 * 1 2 3 29 29 H 1.09002 * 109.47318 * 60.00617 * 1 2 3 30 30 H 1.08993 * 109.47279 * 239.99767 * 2 1 3 31 31 H 1.09002 * 109.47318 * 119.99383 * 2 1 3 32 32 H 1.09006 * 109.47109 * 23.29171 * 4 3 2 33 33 H 1.09003 * 109.47529 * 143.28987 * 4 3 2 34 34 H 0.96998 * 119.99715 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99472 * 5.46215 * 17 15 13 36 36 H 1.07996 * 120.00170 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.90865 * 180.27894 * 20 19 18 38 38 H 1.08000 * 119.91106 * 179.70832 * 21 20 19 39 39 H 1.08995 * 109.47235 * 299.99526 * 26 25 24 40 40 H 1.09002 * 109.47259 * 60.00302 * 26 25 24 41 41 H 1.09009 * 109.47332 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1613 2.1076 -1.2642 5 6 3.5904 2.0212 -1.7343 6 1 4.3193 1.4791 -1.1500 7 6 3.9674 2.6334 -2.9108 8 7 5.2146 2.5575 -3.3213 9 14 2.7064 3.5692 -3.9224 10 1 2.6747 4.9878 -3.4845 11 1 3.0764 3.5028 -5.3590 12 1 1.3657 2.9610 -3.7280 13 6 2.3359 1.9837 1.1630 14 8 2.1275 1.4179 2.2162 15 6 2.9440 3.3476 1.1557 16 8 3.1430 3.9178 0.1027 17 7 3.2721 3.9455 2.3182 18 6 3.7293 5.2675 2.3202 19 6 3.4040 6.1180 1.2723 20 6 3.8515 7.4251 1.2792 21 6 4.6341 7.8866 2.3221 22 6 4.9674 7.0439 3.3672 23 17 5.9494 7.6282 4.6741 24 6 4.5173 5.7325 3.3710 25 8 4.8434 4.9026 4.3976 26 6 6.0472 4.1446 4.2618 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5049 1.6653 -2.0137 33 1 1.8903 3.1529 -1.1154 34 1 5.4798 2.9885 -4.1488 35 1 3.1873 3.4604 3.1538 36 1 2.7975 5.7592 0.4540 37 1 3.5938 8.0868 0.4656 38 1 4.9854 8.9079 2.3207 39 1 5.9775 3.5069 3.3806 40 1 6.8935 4.8230 4.1535 41 1 6.1890 3.5260 5.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123846167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -58.647241 kcal Electronic energy + Delta-G solvation = -27986.709336 eV Core-core repulsion = 23894.413823 eV Total energy + Delta-G solvation = -4092.295513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98776 -39.76173 -38.19945 -37.24822 -36.51860 -35.89950 -34.33782 -32.64600 -30.78613 -30.26588 -29.70378 -27.78281 -26.89738 -25.14547 -23.24799 -22.74944 -22.42975 -21.21704 -19.38937 -18.22137 -17.43483 -17.19597 -16.99452 -16.18386 -16.17068 -15.71459 -15.30949 -15.09495 -14.82726 -14.48306 -14.17465 -13.95798 -13.77131 -13.58253 -13.25184 -13.10161 -12.55432 -12.45745 -12.29767 -12.23547 -11.87484 -11.80528 -11.74330 -11.60152 -11.10188 -11.03421 -10.80475 -10.74053 -10.48821 -10.40567 -10.24429 -10.07146 -9.58648 -8.86407 -8.66306 -8.55373 -8.11138 -7.96705 -6.11760 -4.09399 0.94893 1.06261 1.96698 1.99424 2.69915 3.25663 3.27293 3.30853 3.33296 3.64343 3.87831 3.89746 4.36723 4.72406 4.84687 5.00165 5.20766 5.21821 5.25790 5.28463 5.35518 5.38005 5.44934 5.54142 5.62196 5.65985 5.96028 6.03519 6.04931 6.13571 6.25482 6.38370 6.38855 6.41927 6.69542 6.81847 7.03159 7.30583 7.34635 7.50452 7.79038 8.08381 8.37715 8.50575 8.88046 9.48152 11.01627 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.004022 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.224003 B = 6959.903942 C = 8318.737379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.554 5.554 4 C 0.199 3.801 5 C -0.516 4.516 6 H 0.071 0.929 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.552 6.552 15 C 0.492 3.508 16 O -0.433 6.433 17 N -0.651 5.651 18 C 0.163 3.837 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.126 4.126 22 C -0.032 4.032 23 Cl -0.062 7.062 24 C 0.064 3.936 25 O -0.325 6.325 26 C 0.031 3.969 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.423 0.577 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 6.439 11.841 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.284 5.284 4 C 0.079 3.921 5 C -0.554 4.554 6 H 0.089 0.911 7 C -0.122 4.122 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.432 6.432 15 C 0.275 3.725 16 O -0.301 6.301 17 N -0.298 5.298 18 C 0.066 3.934 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.145 4.145 22 C -0.060 4.060 23 Cl -0.033 7.033 24 C 0.016 3.984 25 O -0.242 6.242 26 C -0.063 4.063 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.261 0.739 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.422 6.512 11.651 13.779 hybrid contribution -0.086 0.320 -0.366 0.494 sum -3.508 6.832 11.286 13.651 Atomic orbital electron populations 1.22120 0.96114 1.01849 1.02211 1.21487 0.93937 0.82287 1.03525 1.47949 1.59371 1.13601 1.07464 1.20302 0.98873 0.93011 0.79919 1.21067 0.92773 1.34245 1.07339 0.91059 1.24729 0.95003 0.95348 0.97122 1.69888 1.16461 1.44259 1.22855 0.86889 0.82077 0.81352 0.79538 1.19785 1.21302 1.19205 1.19617 0.80165 0.86344 0.84565 1.90681 1.55607 1.66161 1.30779 1.20441 0.80520 0.88047 0.83541 1.90886 1.46316 1.63762 1.29099 1.43170 1.64144 1.11386 1.11099 1.17950 0.96270 0.84573 0.94596 1.21621 1.00895 0.92468 0.98956 1.21072 0.96454 0.95316 0.97645 1.20941 1.00578 0.99905 0.93111 1.20973 0.99022 0.93784 0.92215 1.98354 1.68840 1.88088 1.47988 1.17922 0.99995 0.89265 0.91192 1.86063 1.42817 1.56560 1.38713 1.23079 0.85412 0.94812 1.02983 0.91765 0.92562 0.92386 0.89627 0.90163 0.95029 0.92783 0.92607 0.73934 0.82273 0.84347 0.84602 0.93144 0.93237 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.82 6.11 -4.04 -0.02 1.79 16 3 N -0.55 -11.01 2.48 -175.62 -0.43 -11.45 16 4 C 0.20 4.45 3.86 -5.20 -0.02 4.43 16 5 C -0.52 -13.79 8.32 -34.44 -0.29 -14.08 16 6 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 13 C 0.51 10.10 7.67 -11.64 -0.09 10.01 16 14 O -0.55 -10.93 16.04 5.49 0.09 -10.84 16 15 C 0.49 9.50 7.53 -11.64 -0.09 9.42 16 16 O -0.43 -9.42 9.21 5.46 0.05 -9.37 16 17 N -0.65 -10.70 5.27 -10.19 -0.05 -10.75 16 18 C 0.16 2.58 6.46 -83.56 -0.54 2.04 16 19 C -0.12 -1.84 8.73 -39.39 -0.34 -2.19 16 20 C -0.09 -1.09 10.04 -39.59 -0.40 -1.49 16 21 C -0.13 -1.50 9.82 -39.52 -0.39 -1.89 16 22 C -0.03 -0.43 6.33 -39.39 -0.25 -0.68 16 23 Cl -0.06 -0.73 28.50 -51.86 -1.48 -2.21 16 24 C 0.06 0.93 5.74 -39.02 -0.22 0.70 16 25 O -0.33 -4.50 9.28 -19.67 -0.18 -4.68 16 26 C 0.03 0.37 11.13 101.05 1.12 1.50 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.39 8.11 -51.93 -0.42 0.96 16 31 H 0.08 1.30 7.36 -51.93 -0.38 0.92 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.05 1.23 5.28 -51.93 -0.27 0.96 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.42 6.41 7.81 -40.82 -0.32 6.09 16 36 H 0.16 2.71 5.70 -52.49 -0.30 2.41 16 37 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -30.94 363.06 -6.71 -37.65 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.03 Total: 6.29 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -1.24 Total: 9.83 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.29 Total: -48.07 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.89 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.94 -6.71 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123846167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.992 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds