Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46917 * 2 1 4 4 C 1.46499 * 119.99949 * 274.85008 * 3 2 1 5 5 C 1.50696 * 109.47106 * 263.29224 * 4 3 2 6 6 H 1.08007 * 120.00192 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00013 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.46950 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47073 * 210.00225 * 9 7 5 12 12 H 1.48502 * 109.47207 * 329.99729 * 9 7 5 13 13 C 1.34776 * 119.99946 * 94.84745 * 3 2 1 14 14 O 1.21359 * 120.00196 * 354.71364 * 13 3 2 15 15 C 1.49332 * 119.99859 * 174.71940 * 13 3 2 16 16 O 1.21391 * 120.00039 * 0.55924 * 15 13 3 17 17 N 1.34779 * 120.00402 * 180.56082 * 15 13 3 18 18 C 1.39881 * 120.00445 * 185.73693 * 17 15 13 19 19 C 1.38825 * 120.08864 * 23.53507 * 18 17 15 20 20 C 1.38159 * 119.99787 * 179.70351 * 19 18 17 21 21 C 1.38306 * 120.17993 * 0.59839 * 20 19 18 22 22 C 1.38330 * 120.18036 * 359.67500 * 21 20 19 23 23 Cl 1.73602 * 120.00131 * 180.02562 * 22 21 20 24 24 C 1.38653 * 120.00331 * 0.02875 * 22 21 20 25 25 O 1.35977 * 120.09646 * 180.02562 * 24 22 21 26 26 C 1.42902 * 116.99912 * 269.97574 * 25 24 22 27 27 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47590 * 299.99977 * 1 2 3 29 29 H 1.09002 * 109.47318 * 60.00617 * 1 2 3 30 30 H 1.08993 * 109.47279 * 239.99767 * 2 1 3 31 31 H 1.09002 * 109.47318 * 119.99383 * 2 1 3 32 32 H 1.09006 * 109.47109 * 23.29171 * 4 3 2 33 33 H 1.09003 * 109.47529 * 143.28987 * 4 3 2 34 34 H 0.96998 * 119.99715 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99472 * 5.46215 * 17 15 13 36 36 H 1.07996 * 120.00170 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.90865 * 180.27894 * 20 19 18 38 38 H 1.08000 * 119.91106 * 179.70832 * 21 20 19 39 39 H 1.08995 * 109.47235 * 299.99526 * 26 25 24 40 40 H 1.09002 * 109.47259 * 60.00302 * 26 25 24 41 41 H 1.09009 * 109.47332 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1613 2.1076 -1.2642 5 6 3.5904 2.0212 -1.7343 6 1 4.3193 1.4791 -1.1500 7 6 3.9674 2.6334 -2.9108 8 7 5.2146 2.5575 -3.3213 9 14 2.7064 3.5692 -3.9224 10 1 2.6747 4.9878 -3.4845 11 1 3.0764 3.5028 -5.3590 12 1 1.3657 2.9610 -3.7280 13 6 2.3359 1.9837 1.1630 14 8 2.1275 1.4179 2.2162 15 6 2.9440 3.3476 1.1557 16 8 3.1430 3.9178 0.1027 17 7 3.2721 3.9455 2.3182 18 6 3.7293 5.2675 2.3202 19 6 3.4040 6.1180 1.2723 20 6 3.8515 7.4251 1.2792 21 6 4.6341 7.8866 2.3221 22 6 4.9674 7.0439 3.3672 23 17 5.9494 7.6282 4.6741 24 6 4.5173 5.7325 3.3710 25 8 4.8434 4.9026 4.3976 26 6 6.0472 4.1446 4.2618 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5049 1.6653 -2.0137 33 1 1.8903 3.1529 -1.1154 34 1 5.4798 2.9885 -4.1488 35 1 3.1873 3.4604 3.1538 36 1 2.7975 5.7592 0.4540 37 1 3.5938 8.0868 0.4656 38 1 4.9854 8.9079 2.3207 39 1 5.9775 3.5069 3.3806 40 1 6.8935 4.8230 4.1535 41 1 6.1890 3.5260 5.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123846167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -78.505117 kcal Electronic energy + Delta-G solvation = -27987.570438 eV Core-core repulsion = 23894.413823 eV Total energy + Delta-G solvation = -4093.156615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35139 -41.06660 -39.61841 -38.33148 -37.68659 -37.33628 -35.69267 -34.65001 -32.24028 -31.34380 -30.88038 -29.61580 -27.91279 -26.51962 -24.63240 -24.42518 -23.57535 -22.52898 -20.81957 -19.46074 -19.13026 -18.68602 -18.49896 -17.63727 -17.39839 -16.94581 -16.75119 -16.40711 -16.19522 -15.85816 -15.65659 -15.23956 -15.13407 -14.83017 -14.72604 -14.38133 -14.17739 -13.92262 -13.59064 -13.43333 -13.23410 -13.11034 -12.82754 -12.71851 -12.65287 -12.52055 -12.21968 -12.07649 -12.02946 -11.87402 -11.65807 -11.58012 -11.18778 -10.73228 -10.30495 -9.74010 -9.68240 -9.23933 -8.23909 -6.25863 -0.21302 -0.05892 0.54680 0.91001 1.31978 1.40572 1.43133 1.49671 2.07188 2.29174 2.39259 2.44999 2.76532 3.13789 3.24582 3.80912 3.94524 4.11060 4.14784 4.22470 4.31225 4.32509 4.34887 4.35560 4.47623 4.67022 4.69227 4.80684 4.90078 4.94377 4.96066 5.00925 5.18330 5.29248 5.32329 5.44411 5.50809 5.59139 5.95477 6.07589 6.22410 6.34913 6.64885 6.70281 6.93782 7.35789 8.93235 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.004022 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.224003 B = 6959.903942 C = 8318.737379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.560 5.560 4 C 0.211 3.789 5 C -0.508 4.508 6 H 0.023 0.977 7 C 0.022 3.978 8 N -0.949 5.949 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.238 1.238 13 C 0.507 3.493 14 O -0.554 6.554 15 C 0.492 3.508 16 O -0.465 6.465 17 N -0.638 5.638 18 C 0.136 3.864 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.111 4.111 22 C -0.041 4.041 23 Cl -0.047 7.047 24 C 0.060 3.940 25 O -0.332 6.332 26 C 0.030 3.970 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.427 0.573 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 7.761 12.361 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.290 5.290 4 C 0.090 3.910 5 C -0.547 4.547 6 H 0.042 0.958 7 C -0.176 4.176 8 N -0.590 5.590 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.161 1.161 13 C 0.289 3.711 14 O -0.435 6.435 15 C 0.275 3.725 16 O -0.336 6.336 17 N -0.285 5.285 18 C 0.039 3.961 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.069 4.069 23 Cl -0.018 7.018 24 C 0.013 3.987 25 O -0.248 6.248 26 C -0.064 4.064 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.266 0.734 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.842 7.819 12.230 15.302 hybrid contribution 0.472 -0.087 -0.351 0.595 sum -4.370 7.731 11.879 14.832 Atomic orbital electron populations 1.22045 0.93446 1.03760 1.01957 1.21750 0.96106 0.80489 1.03609 1.48014 1.59605 1.14767 1.06635 1.20024 0.96114 0.93722 0.81185 1.21187 0.94094 1.32813 1.06563 0.95848 1.25604 0.96950 0.96443 0.98559 1.70051 1.18992 1.46211 1.23720 0.85859 0.80654 0.79891 0.77417 1.19547 1.21231 1.16063 1.19775 0.80051 0.86652 0.84606 1.90664 1.55738 1.66382 1.30695 1.20435 0.80347 0.87828 0.83927 1.90867 1.48194 1.64394 1.30166 1.42997 1.63353 1.11842 1.10345 1.18144 0.97937 0.84175 0.95795 1.21630 1.01591 0.93898 0.98488 1.21376 0.95705 0.94421 0.98572 1.21317 0.98901 1.01018 0.91792 1.21149 0.99145 0.93503 0.93058 1.98359 1.68332 1.87758 1.47360 1.18031 0.99808 0.90016 0.90864 1.86047 1.43655 1.56707 1.38436 1.23218 0.84887 0.94786 1.03540 0.88779 0.93142 0.92214 0.89544 0.90138 0.93359 0.92592 0.92678 0.73435 0.84119 0.81642 0.81370 0.94878 0.92677 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.10 3.28 6.11 86.38 0.53 3.80 16 3 N -0.56 -22.28 2.48 -827.88 -2.05 -24.33 16 4 C 0.21 9.36 3.86 85.63 0.33 9.69 16 5 C -0.51 -27.87 8.32 25.60 0.21 -27.66 16 6 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 7 C 0.02 1.24 5.47 84.65 0.46 1.70 16 8 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 9 Si 0.94 42.22 27.47 68.60 1.88 44.10 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 13 C 0.51 20.29 7.67 87.23 0.67 20.96 16 14 O -0.55 -21.97 16.04 -3.28 -0.05 -22.02 16 15 C 0.49 19.55 7.53 87.23 0.66 20.20 16 16 O -0.47 -20.90 9.21 -3.37 -0.03 -20.93 16 17 N -0.64 -21.52 5.27 -304.50 -1.61 -23.12 16 18 C 0.14 4.33 6.46 38.26 0.25 4.58 16 19 C -0.14 -4.21 8.73 22.39 0.20 -4.02 16 20 C -0.08 -1.95 10.04 22.27 0.22 -1.72 16 21 C -0.11 -2.37 9.82 22.31 0.22 -2.15 16 22 C -0.04 -1.01 6.33 22.39 0.14 -0.87 16 23 Cl -0.05 -1.02 28.50 -2.72 -0.08 -1.10 16 24 C 0.06 1.72 5.74 22.63 0.13 1.85 16 25 O -0.33 -8.98 9.28 -93.29 -0.87 -9.84 16 26 C 0.03 0.68 11.13 113.37 1.26 1.94 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 31 H 0.08 2.57 7.36 -2.39 -0.02 2.55 16 32 H 0.05 2.00 7.08 -2.38 -0.02 1.99 16 33 H 0.06 2.53 5.28 -2.39 -0.01 2.51 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.43 13.24 7.81 -92.71 -0.72 12.51 16 36 H 0.14 4.92 5.70 -2.91 -0.02 4.91 16 37 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -68.82 363.06 3.82 -65.00 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.30 Total: 25.06 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.02 Total: 25.15 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -3.36 Total: -105.42 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.95 Total: -52.79 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -68.82 3.82 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123846167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.504 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds